**Chapter 5**

*Protecting Rice Grains in the Post-Genomic Era*

on rice chromosome 12. PLoS ONE.

long non-coding RNAs responsible to *Dickeya zeae* in rice. RSC Advances.

[75] Li W, Jia Y, Liu F, Wang F, Fan F, Wang J, et al. Integration analysis of small RNA and degradome sequencing reveals microRNAs responsive to *Dickeya zeae* in resistant rice. Molecular Science. 2019;**20**:222. DOI: 10.3390/

[76] Rioux R, Manmathan H, Singh P, Reyes B, Jia Y, Tavantzis S. Comparative analysis of putative pathogenesis-related gene expression in two *Rhizoctonia solani* pathosystems. Current Genetics.

[77] Nadarajah K, Razali NM, Cheah BH, Sahruna NS, Ismail S, Tathode M, et al. Draft genome sequence of *Rhizoctonia solani* anastomosis group 1 subgroup 1A strain 1802/KB isolated from rice. Genome Announcements. 2017;**5**(43):e01188-e01117. DOI: 10.1128/

2018;**8**:34408-34417

ijms20010222

2011;**57**:391-408

genomeA.01188-17

[67] Amei A, Lee S, Mysore KS, Jia Y. Statistical inference of selection and divergence of rice blast resistance gene Pi-ta. Genes, Genomes, Genetics.

[68] Dean R, Van Kan JAL, Pretorius ZA, Hammond-Kosack KE, Di Pietro A, Spanu PD, et al. The top 10 fungal pathogens in molecular plant pathology. Molecular Plant Pathology. 2012;**13**:414-430. DOI: 10.1111/j.1364-3703.2011.00783.x

[69] Wang X, Jia MH, Ghai P, Lee FN, Jia Y. Genome-wide association of rice blast resistance and yield related components of rice. Molecular Plant-Microbe Interactions. 2015;**28**:1383-1392

[70] Wang Z, Lin H, Valent B, Rutger JN, Jia Y. Cytological and molecular analyses of disease resistance to the rice blast fungus. Chinese Journal of Rice Science.

[71] Costanzo S, Jia Y. Alternatively spliced transcripts of *Pi-ta* blast resistance gene in *Oryza sativa*. Plant

[72] Chen X, Jia Y, Jia MH, Pinson S, Wang X, Wu B-W. Functional interactions between major rice blast resistance genes, *Pita* and *Pi-b*, and minor blast resistance QTL. Phytopathology. 2018;**108**:1095-1103. DOI: 10.1094/

[73] Venu RC, Jia Y, Gowda M, Jia MH, Jantasuriyarat C, Stahlberg E, et al. RL-SAGE and microarray analysis of the rice transcriptome after *Rhizoctonia solani* infection. Molecular Genetics and

Science. 2009;**177**:468-478

PHYTO-02-18-0032-R

Genomics. 2007;**278**:421-431

[74] Li W, Jia Y, Liu F, Wang F, Fan F, Wang J, et al. Genome-wide identification and characterization of

2012;**7**(10):e43066

2014;**4**:2425-2432

2007;**21**:335-340

**52**
