**Meet the editor**

Dr. Martha Patricia Hernández-Vergara obtained her DSc from CINVESTAV-IPN in crustacean nutrition. Dr. Carlos Ivan Pérez-Rostro obtained his DSc from CIB-NOR-CONACYT in genetic applications in aquaculture. Both are research professors at the Instituto Tecnologico de Boca del Rio (ITBOCA) in Veracruz, Mexico. Their research focuses on biotechnical development for sustain-

able aquaculture practices. They are also active in the graduate programs at the ITBOCA, where they have developed programs of research nutrition for native crustaceans, breeding and genetic selection of tilapia, aquaponic systems and biofloc technology. They had published several papers in reputable journals.

Contents

**Preface VII**

**Practices (BMPs) 1**

Hernández-Vergara

**Aquaculture 173**

Lalloo

Singh

and Nur Hidayah Asgnari

Zarazua and P. J Gutierrez-Yurrita

**Macrobrachium rosenbergii 87**

**Potential 67**

Chapter 1 **Impacts of Aquaculture on Habitats and Best Management**

Gulnihal Ozbay, Grant Blank and Taworn Thunjai

Chapter 2 **Development of Freshwater Native Species with Aquacultural**

Chapter 3 **Biofloc, a Technical Alternative for Culturing Malaysian Prawn**

Chapter 4 **Sustainable Technique for Selected Live Feed Culture 105**

Chapter 6 **The Use and Benefits of Bacillus Based Biological Agents in**

Chapter 7 **Application of Biological Agents in Abalone Aquaculture: A**

**South African Perspective 207**

Chapter 5 **Use of Yeasts as Probiotics in Fish Aquaculture 135** Paola Navarrete and Dariel Tovar-Ramírez

Carlos I. Pérez-Rostro, Jorge A. Pérez-Fuentes and Martha P.

Zaleha Kassim, Akbar John, Lim Keng Chin, Nur Farahiyah Zakaria

Mulalo Edna Nemutanzhela, Yrielle Roets, Neil Gardiner and Rajesh

Ghaneshree Moodley, Lethabo Mashigo, Rajesh Lalloo and Suren

Fernando Garcia-Trejo, Silvia Hurtado-Gonzalez, Genaro M. Soto-

## Contents

#### **Preface XI**


### Chapter 8 **Use of Probiotic Bacteria against Bacterial and Viral Infections in Shellfish and Fish Aquaculture 239**

Héctor Cordero, María Ángeles Esteban and Alberto Cuesta

Preface

and pasture will come under serious pressure.

ter exchange and more efficient feed conversion.

innovative techniques for sustainable aquaculture.

As population continues to grow and consumers become increasingly convinced of the health benefits of eating seafood, market demands for seafood will expand in the years to come. Fisheries are stagnating and might even level off, so aquaculture will have to grow even faster. Fresh water will become increasingly scarce in the decades ahead and, consider‐ ing available global resources for food extraction or production, it is clear that land for crops

Because water is an ideal environment for microbial development, the role of bacteria—ben‐

Beneficial bacteria, as probiotics and as part of biofloc systems in water quality control, will convert organic waste matter into nutritious biomass. This could greatly contribute to in‐ creased sustainability and more secure production systems, through reducing needs for wa‐

That is why a better understanding of aquaculture ecosystem, better cultivation practices, and greater effort in the creation of prophylaxis and therapeutic measures should be priori‐ ties in aquaculture. The ultimate aim should be to develop new hatchery practices and apply

**Martha Patricia Hernández-Vergara (1) and Carlos Ivan Pérez-Rostro (2)**

Technological Institute of Boca del Río, Boca del Río, Veracruz, Mexico

(2) Laboratory of Genetic Improvement and Aquaculture Production,

(1) Laboratory of Native Crustacean Aquaculture,

Technological Institute of Boca del Río, Veracruz, Mexico

eficial and harmful—in aquaculture systems requires much more research attention.

## Preface

Chapter 8 **Use of Probiotic Bacteria against Bacterial and Viral Infections**

Héctor Cordero, María Ángeles Esteban and Alberto Cuesta

**in Shellfish and Fish Aquaculture 239**

**VI** Contents

As population continues to grow and consumers become increasingly convinced of the health benefits of eating seafood, market demands for seafood will expand in the years to come. Fisheries are stagnating and might even level off, so aquaculture will have to grow even faster. Fresh water will become increasingly scarce in the decades ahead and, consider‐ ing available global resources for food extraction or production, it is clear that land for crops and pasture will come under serious pressure.

Because water is an ideal environment for microbial development, the role of bacteria—ben‐ eficial and harmful—in aquaculture systems requires much more research attention.

Beneficial bacteria, as probiotics and as part of biofloc systems in water quality control, will convert organic waste matter into nutritious biomass. This could greatly contribute to in‐ creased sustainability and more secure production systems, through reducing needs for wa‐ ter exchange and more efficient feed conversion.

That is why a better understanding of aquaculture ecosystem, better cultivation practices, and greater effort in the creation of prophylaxis and therapeutic measures should be priori‐ ties in aquaculture. The ultimate aim should be to develop new hatchery practices and apply innovative techniques for sustainable aquaculture.

> **Martha Patricia Hernández-Vergara (1) and Carlos Ivan Pérez-Rostro (2)** (1) Laboratory of Native Crustacean Aquaculture, Technological Institute of Boca del Río, Boca del Río, Veracruz, Mexico

(2) Laboratory of Genetic Improvement and Aquaculture Production, Technological Institute of Boca del Río, Veracruz, Mexico

**Chapter 1**

**Impacts of Aquaculture on Habitats and Best**

The demand for food must be met as the human population reaches an estimated nine billion people by the year 2050. This means we must increase overall food production by 70% and this increase must be sustainable and food price affordable (United Nations FAO 2009). Most of the population growth is expected to continue in underdeveloped countries with limited technologies and venues (United Nations FAO 2009). As a popular high protein food source, seafood contains omega-3 fatty acids that are required for healthy human development (UMD Medical Center 2013). Seafood is low in calories, total fat, and saturated fat, while high in vitamins and minerals including vitamins A and D, phosphorus, magnesium, selenium, and iodine (FAO FOCUS 2013). Fish have been shown to have numerous health benefits (Table 1). Seafood is a healthy, low-fat alternative to beef, poultry, and pork and significant omega-3 fatty acids much higher than vegetable-based diets (FAO FOCUS 2013). Specifically, omega-3 fatty acids contained within fish oil are critically important for infants and babies to develop

Population growth and economic development trends are the most important drivers for the demand for high quality and nutritional seafood products (Ewart 2013). With wild capture fisheries exceeding the maximum sustainable harvest capacity, aquaculture has become a bridge in closing the gap between rising demand and traditional seafood sources (Figure 1). Today, farmed seafood accounts for about 50% of overall production in the global marketplace (Bush et al. 2013). The United States aquaculture industry, valued at over \$1.1 billion, produces a variety of fish and shellfish species for food, recreation, and industrial needs (Ewart 2013). However the United States is in a seafood deficit, importing more seafood to meet the demands

> © 2014 Ozbay et al.; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

for seafood consumption than it can produce (NOAA Office of Aquaculture 2013).

**Management Practices (BMPs)**

Gulnihal Ozbay, Grant Blank and Taworn Thunjai

Additional information is available at the end of the chapter

http://dx.doi.org/10.5772/57471

a normal brain (FAO FOCUS 2013).

**1. Introduction**

## **Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)**

Gulnihal Ozbay, Grant Blank and Taworn Thunjai

Additional information is available at the end of the chapter

http://dx.doi.org/10.5772/57471

#### **1. Introduction**

The demand for food must be met as the human population reaches an estimated nine billion people by the year 2050. This means we must increase overall food production by 70% and this increase must be sustainable and food price affordable (United Nations FAO 2009). Most of the population growth is expected to continue in underdeveloped countries with limited technologies and venues (United Nations FAO 2009). As a popular high protein food source, seafood contains omega-3 fatty acids that are required for healthy human development (UMD Medical Center 2013). Seafood is low in calories, total fat, and saturated fat, while high in vitamins and minerals including vitamins A and D, phosphorus, magnesium, selenium, and iodine (FAO FOCUS 2013). Fish have been shown to have numerous health benefits (Table 1). Seafood is a healthy, low-fat alternative to beef, poultry, and pork and significant omega-3 fatty acids much higher than vegetable-based diets (FAO FOCUS 2013). Specifically, omega-3 fatty acids contained within fish oil are critically important for infants and babies to develop a normal brain (FAO FOCUS 2013).

Population growth and economic development trends are the most important drivers for the demand for high quality and nutritional seafood products (Ewart 2013). With wild capture fisheries exceeding the maximum sustainable harvest capacity, aquaculture has become a bridge in closing the gap between rising demand and traditional seafood sources (Figure 1). Today, farmed seafood accounts for about 50% of overall production in the global marketplace (Bush et al. 2013). The United States aquaculture industry, valued at over \$1.1 billion, produces a variety of fish and shellfish species for food, recreation, and industrial needs (Ewart 2013). However the United States is in a seafood deficit, importing more seafood to meet the demands for seafood consumption than it can produce (NOAA Office of Aquaculture 2013).

© 2014 Ozbay et al.; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Commercial aquaculture is a young and rapidly expanding industry in the United States and the need for information on sustainable growth and development has increased dramatically during the past few decades (Wilson et al. 2002; FAO FOCUS 2013). Aquaculture in the simplest terms is the farming of aquatic plants and animals. Furthermore, the National Oceanic and Atmospheric Administration (NOAA) Office of Aquaculture (2013) describes aquaculture on a broader scale as the breeding, rearing, and harvesting of plants and animals in all types of water environments, including ponds, rivers, lakes, and the ocean. Similar to agriculture, aquaculture can take place in the natural environment or in a manmade environment where controlled cultivation and husbandry of aquatic plants and animals are achieved. Using aquaculture techniques and technologies, researchers, aquaculturists and the aquaculture industry are "growing," "producing," "culturing," and "farming" all types of freshwater and marine species (NOAA Office of Aquaculture 2013). According to Ewart (2013), aquaculture has a long history dating back a few thousands of years in China and Egypt. Aquaculture within the United States dates back to the late 1800s, when hatchery technologies were utilized to cultivate fish for restoration of depleted inland freshwater fishes (Ewart 2013). Ewart (2013) stated with a short commercial history (about 50 years), the United States aquaculture industry has a current annual farm gate value of \$1.9 billion. Included in the domestic aquaculture production are variety of fish and shellfish species for food, recreation (stock enhancement, restoration, ornamental fish, aquatic plants, live bait), and industrial applica‐

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

3

Aquaculture can benefit more than human economies and diets. Oyster shellfish aquaculture provides many of the same ecosystem services as natural oyster reefs (Dealteris et al. 2004; Erbland and Ozbay 2008). Unlike some finfish farming practices, rearing shellfish in high densities in shallow water with abundant phytoplankton concentrations can have positive effects on the environment and may promote biodiversity (Shumway et al. 2003; Dealteris et al. 2004; O'Beirn et al. 2004; Tallman and Forrester 2007; D'Amours et al. 2008; Erbland and

As stated by Emerson (1999), the process of aquaculture has been under increasing scrutiny as the world tries to supply food for a population which is currently over seven billion. This criticism is happening regardless of how aquaculture is perceived as an economic windfall for developing countries or potential food industries. Aquaculture is the fastest growing food production sector in the world but its sustainability is not fully satisfied (FAO 2013). This chapter will reassure the ultimate question we ask ourselves: is sustainable aquaculture our

Emerson (1999) discussed how pollution, destruction of sensitive coastal habitats, threats to aquatic biodiversity and significant socio-economic costs must be balanced against the substantial benefits and how aquaculture has great potential for food production and the alleviation of poverty for people living in coastal areas where most of the poorest in the world live. He also stated a delicate balance between food security and the environmental costs of production must be achieved. This leads us to our second question: how do we make the

world's fastest growing food sector environmentally and socially responsible?

tions (food additives).

solution?

Ozbay 2008; Taylor and Bushek 2008).


**Table 1.** Nutrition facts on various seafood species (The United States Food and Drug Administration 2008).

Commercial aquaculture is a young and rapidly expanding industry in the United States and the need for information on sustainable growth and development has increased dramatically during the past few decades (Wilson et al. 2002; FAO FOCUS 2013). Aquaculture in the simplest terms is the farming of aquatic plants and animals. Furthermore, the National Oceanic and Atmospheric Administration (NOAA) Office of Aquaculture (2013) describes aquaculture on a broader scale as the breeding, rearing, and harvesting of plants and animals in all types of water environments, including ponds, rivers, lakes, and the ocean. Similar to agriculture, aquaculture can take place in the natural environment or in a manmade environment where controlled cultivation and husbandry of aquatic plants and animals are achieved. Using aquaculture techniques and technologies, researchers, aquaculturists and the aquaculture industry are "growing," "producing," "culturing," and "farming" all types of freshwater and marine species (NOAA Office of Aquaculture 2013). According to Ewart (2013), aquaculture has a long history dating back a few thousands of years in China and Egypt. Aquaculture within the United States dates back to the late 1800s, when hatchery technologies were utilized to cultivate fish for restoration of depleted inland freshwater fishes (Ewart 2013). Ewart (2013) stated with a short commercial history (about 50 years), the United States aquaculture industry has a current annual farm gate value of \$1.9 billion. Included in the domestic aquaculture production are variety of fish and shellfish species for food, recreation (stock enhancement, restoration, ornamental fish, aquatic plants, live bait), and industrial applica‐ tions (food additives).

Aquaculture can benefit more than human economies and diets. Oyster shellfish aquaculture provides many of the same ecosystem services as natural oyster reefs (Dealteris et al. 2004; Erbland and Ozbay 2008). Unlike some finfish farming practices, rearing shellfish in high densities in shallow water with abundant phytoplankton concentrations can have positive effects on the environment and may promote biodiversity (Shumway et al. 2003; Dealteris et al. 2004; O'Beirn et al. 2004; Tallman and Forrester 2007; D'Amours et al. 2008; Erbland and Ozbay 2008; Taylor and Bushek 2008).

As stated by Emerson (1999), the process of aquaculture has been under increasing scrutiny as the world tries to supply food for a population which is currently over seven billion. This criticism is happening regardless of how aquaculture is perceived as an economic windfall for developing countries or potential food industries. Aquaculture is the fastest growing food production sector in the world but its sustainability is not fully satisfied (FAO 2013). This chapter will reassure the ultimate question we ask ourselves: is sustainable aquaculture our solution?

Emerson (1999) discussed how pollution, destruction of sensitive coastal habitats, threats to aquatic biodiversity and significant socio-economic costs must be balanced against the substantial benefits and how aquaculture has great potential for food production and the alleviation of poverty for people living in coastal areas where most of the poorest in the world live. He also stated a delicate balance between food security and the environmental costs of production must be achieved. This leads us to our second question: how do we make the world's fastest growing food sector environmentally and socially responsible?

**Table 1.** Nutrition facts on various seafood species (The United States Food and Drug Administration 2008).

2 Sustainable Aquaculture Techniques

loss of habitat, and pollution as we stated earlier. As our most important fisheries are collaps‐ ing, fishermen and seafood processors are losing their businesses. A solution to this issue lies in aquaculture, particularly marine aquaculture. Although technological advances enable safe, profitable, and environmentally sustainable culturing of aquatic organisms, sustainability seems to be the key to long lasting aquaculture practices that are profitable and environmen‐

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

5

Considering the majority of fish we consume are farm-raised fish with over 100 species cultured globally, various culturing technique have been used including traditional earthen ponds to high-tech tank systems, each culture method/technique yields its own environmental foot print (Monterey Bay Aquarium Foundation 2013). Although most aquaculture facilities manage with the best intent for stress reduction, beneficial health and fast growth, many larger intensive aquaculture systems are managed where the stock is raised under stressful environ‐ mental conditions where there is little ecological balance. In compensating for poor environ‐ mental and health condition, managers have often relied heavily upon chemical, antibiotic and water treatments to get their fish to harvest before the system becomes too stressful for optimum growth. Managers risk rising production costs, stock mortalities, and the degrada‐ tion of habitats that receive liquid waste discharges (Briggs and Funge-Smith 1994). Dalsgaard et al. (1995) explained the concept of ecological sustainability as maximization of internal feedback within a culture system. They refer this maximization as the integrated resources management practice similar to the agro-ecological engineering approach to integrated agriculture-aquaculture farming used in China. Such a system would minimize inputs and

As the aquaculture industry grows, the use of treatments unapproved by the Food and Drug Administration (FDA) and/or the misuse of chemicals and treatment strategies administered to culture seafood also grows (FDA 2008). To protect consumers, it is important to ensure that both imported and domestic aquaculture seafood products are free from potentially harmful drug, microbial, and heavy metal residues. These residues in food can cause acute, chronic or microbial effects on people. An acute response from hypersensitivity or allergenicity may occur (FDA 2008). Chronic effects can be long term and they are difficult to detect because these events are typically underreported. Cancer is a potential chronic long term effect (Virtanen et al. 2008). Microbial effects caused by drug residues have an effect on human intestinal flora which limits the activity of intestinal bacteria (FDA 2008). Moreover, antibiotic drug residues can affect the development of resistant bacterial populations. FDA (2008) provides one such example "the unapproved use of fluoroquinolones, such as ciprofloxacin, poses the risk of increasing antibiotic resistant bacteria with the potential for serious human health consequences from untreatable infections. In addition, chronic dietary exposure to high concentrations of fluoroquinolone residues, particularly during early growth, may result in a number of toxicities including joint and testicular lesions." The use of unapproved compounds or misuse of FDA approved new animal drugs, will impact the safety of aquaculture products

In order to identify potential ways to decrease unnecessary outflows from aquaculture systems in the United States, the National Pollutant Discharge Elimination System (NPDES) permitting

wasted outflows of resources and maximize profits.

for the consumers in the United States.

tally sound.

 **Figure 1. a.** Global harvest of aquatic organisms in millions of tons between 1950-2010 (FAO 2011); **b.** Global aquaculture production in millions of tons between 1950-2010 (FAO 2011); **c.** Main aquaculture countries between 1950-2010 (FAO 2011); and **d.** Main aquaculture countries in 2010 (FAO 2011). **Figure 1.** Global harvest of aquatic organisms in millions of tons between 1950-2010 (FAO 2011); b. Global aquacul‐ ture production in millions of tons between 1950-2010 (FAO 2011); c. Main aquaculture countries between 1950-2010 (FAO 2011); and d. Main aquaculture countries in 2010 (FAO 2011).

As we search for answers to these questions, the World Wildlife Federation (WWF 2013) gives additional reasons for why aquaculture must become more responsible. According to the WWF (2013), over 53% of the fisheries worldwide are exploited when over 32% are either depleted, overexploited or recovering including are top ten marine fisheries and as much as 30% of all capture fisheries production are either fully exploited or overexploit‐ ed. Over 90% of large fish were overfished including are several important commercial fishes (i.e. tuna, skipjack, cod, sturgeon) to the point their survival is threated. Whether it is fully exploited or overexploited, by 2048 fish species harvested for food will be col‐ lapsed unless urgent management practices are taken to improve the current conditions (WWF 2013). Unwanted fish (by-catch), like many other animals, die due to inefficient, illegal, and destructive fishing practices every year. This destructive fishing practice along with overfishing largely results in poor fisheries management, pirate fishes, subsidies, and unfair fisheries partnerships (WWF 2013). Aquaculture can benefit more than human economies and diets. Oyster shellfish aquaculture provides many of the same ecosystem services as natural oyster reefs (Dealteris et al. 2004; Erbland and Ozbay 2008). Unlike some finfish farming practices, rearing shellfish in high densities in shallow water with abundant phytoplankton concentrations can have positive effects on the environment and may promote biodiversity (Shumway et al. 2003; Dealteris et al. 2004; O'Beirn et al. 2004; Tallman and Forrester 2007; D'Amours et al. 2008; Erbland and Ozbay 2008; Taylor and Bushek 2008). As stated by Emerson (1999), the process of aquaculture has been under increasing scrutiny as the world tries to supply food for a population which is currently over seven billion. This criticism is happening regardless of how aquaculture is perceived as an economic windfall for developing countries or potential food industries. Aquaculture is the fastest growing food production sector in the world but its sustainability is not fully satisfied (FAO 2013). This chapter will reassure the ultimate question we ask ourselves: **is sustainable aquaculture our solution**? Emerson (1999) discussed how pollution, destruction of sensitive coastal habitats, threats to aquatic biodiversity and significant socio-economic costs must be balanced against the substantial benefits and how aquaculture has great potential for food production and the alleviation of poverty for people living in coastal areas where most of the poorest in the world live. He also stated a delicate balance between food security and the environmental costs of production must be achieved. This leads us to our second question: **how do we make the world's fastest growing food sector environmentally and socially responsible?**

Over the past 50 years in the Unites States, the demand for seafood has increased as the population reached over 300 million people (NOAA 2011). Seafood import is over 86% of total seafood demand in the United States (NOAA 2010). Unfortunately, many economically and ecologically important fish species are disappearing from our oceans through over-harvest, why aquaculture must become more responsible. According to the WWF (2013), over 53% of the fisheries worldwide are exploited when over 32% are either depleted, overexploited or recovering including are top ten marine fisheries and as much

As we search for answers to these questions, the World Wildlife Federation (WWF 2013) gives additional reasons for

loss of habitat, and pollution as we stated earlier. As our most important fisheries are collaps‐ ing, fishermen and seafood processors are losing their businesses. A solution to this issue lies in aquaculture, particularly marine aquaculture. Although technological advances enable safe, profitable, and environmentally sustainable culturing of aquatic organisms, sustainability seems to be the key to long lasting aquaculture practices that are profitable and environmen‐ tally sound.

Considering the majority of fish we consume are farm-raised fish with over 100 species cultured globally, various culturing technique have been used including traditional earthen ponds to high-tech tank systems, each culture method/technique yields its own environmental foot print (Monterey Bay Aquarium Foundation 2013). Although most aquaculture facilities manage with the best intent for stress reduction, beneficial health and fast growth, many larger intensive aquaculture systems are managed where the stock is raised under stressful environ‐ mental conditions where there is little ecological balance. In compensating for poor environ‐ mental and health condition, managers have often relied heavily upon chemical, antibiotic and water treatments to get their fish to harvest before the system becomes too stressful for optimum growth. Managers risk rising production costs, stock mortalities, and the degrada‐ tion of habitats that receive liquid waste discharges (Briggs and Funge-Smith 1994). Dalsgaard et al. (1995) explained the concept of ecological sustainability as maximization of internal feedback within a culture system. They refer this maximization as the integrated resources management practice similar to the agro-ecological engineering approach to integrated agriculture-aquaculture farming used in China. Such a system would minimize inputs and wasted outflows of resources and maximize profits.

As the aquaculture industry grows, the use of treatments unapproved by the Food and Drug Administration (FDA) and/or the misuse of chemicals and treatment strategies administered to culture seafood also grows (FDA 2008). To protect consumers, it is important to ensure that both imported and domestic aquaculture seafood products are free from potentially harmful drug, microbial, and heavy metal residues. These residues in food can cause acute, chronic or microbial effects on people. An acute response from hypersensitivity or allergenicity may occur (FDA 2008). Chronic effects can be long term and they are difficult to detect because these events are typically underreported. Cancer is a potential chronic long term effect (Virtanen et al. 2008). Microbial effects caused by drug residues have an effect on human intestinal flora which limits the activity of intestinal bacteria (FDA 2008). Moreover, antibiotic drug residues can affect the development of resistant bacterial populations. FDA (2008) provides one such example "the unapproved use of fluoroquinolones, such as ciprofloxacin, poses the risk of increasing antibiotic resistant bacteria with the potential for serious human health consequences from untreatable infections. In addition, chronic dietary exposure to high concentrations of fluoroquinolone residues, particularly during early growth, may result in a number of toxicities including joint and testicular lesions." The use of unapproved compounds or misuse of FDA approved new animal drugs, will impact the safety of aquaculture products for the consumers in the United States.

As we search for answers to these questions, the World Wildlife Federation (WWF 2013) gives additional reasons for why aquaculture must become more responsible. According to the WWF (2013), over 53% of the fisheries worldwide are exploited when over 32% are either depleted, overexploited or recovering including are top ten marine fisheries and as much as 30% of all capture fisheries production are either fully exploited or overexploit‐ ed. Over 90% of large fish were overfished including are several important commercial fishes (i.e. tuna, skipjack, cod, sturgeon) to the point their survival is threated. Whether it is fully exploited or overexploited, by 2048 fish species harvested for food will be col‐ lapsed unless urgent management practices are taken to improve the current conditions (WWF 2013). Unwanted fish (by-catch), like many other animals, die due to inefficient, illegal, and destructive fishing practices every year. This destructive fishing practice along with overfishing largely results in poor fisheries management, pirate fishes, subsidies, and

**Figure 1.** Global harvest of aquatic organisms in millions of tons between 1950-2010 (FAO 2011); b. Global aquacul‐ ture production in millions of tons between 1950-2010 (FAO 2011); c. Main aquaculture countries between

Tallman and Forrester 2007; D'Amours et al. 2008; Erbland and Ozbay 2008; Taylor and Bushek 2008).

ultimate question we ask ourselves: **is sustainable aquaculture our solution**?

1950-2010 (FAO 2011); and d. Main aquaculture countries in 2010 (FAO 2011).

 **Figure 1. a.** Global harvest of aquatic organisms in millions of tons between 1950-2010 (FAO 2011); **b.** Global aquaculture production in millions of tons between 1950-2010 (FAO 2011); **c.** Main aquaculture countries between 1950-2010 (FAO 2011);

Aquaculture can benefit more than human economies and diets. Oyster shellfish aquaculture provides many of the same ecosystem services as natural oyster reefs (Dealteris et al. 2004; Erbland and Ozbay 2008). Unlike some finfish farming practices, rearing shellfish in high densities in shallow water with abundant phytoplankton concentrations can have positive effects on the environment and may promote biodiversity (Shumway et al. 2003; Dealteris et al. 2004; O'Beirn et al. 2004;

As stated by Emerson (1999), the process of aquaculture has been under increasing scrutiny as the world tries to supply food for a population which is currently over seven billion. This criticism is happening regardless of how aquaculture is perceived as an economic windfall for developing countries or potential food industries. Aquaculture is the fastest growing food production sector in the world but its sustainability is not fully satisfied (FAO 2013). This chapter will reassure the

Emerson (1999) discussed how pollution, destruction of sensitive coastal habitats, threats to aquatic biodiversity and significant socio-economic costs must be balanced against the substantial benefits and how aquaculture has great potential for food production and the alleviation of poverty for people living in coastal areas where most of the poorest in the world live. He also stated a delicate balance between food security and the environmental costs of production must be achieved. This leads us to our second question: **how do we make the world's fastest growing food sector environmentally and socially** 

As we search for answers to these questions, the World Wildlife Federation (WWF 2013) gives additional reasons for why aquaculture must become more responsible. According to the WWF (2013), over 53% of the fisheries worldwide are exploited when over 32% are either depleted, overexploited or recovering including are top ten marine fisheries and as much

Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **4**

 **a b**

**<sup>c</sup> <sup>d</sup>**

Over the past 50 years in the Unites States, the demand for seafood has increased as the population reached over 300 million people (NOAA 2011). Seafood import is over 86% of total seafood demand in the United States (NOAA 2010). Unfortunately, many economically and ecologically important fish species are disappearing from our oceans through over-harvest,

unfair fisheries partnerships (WWF 2013).

**responsible?**

and **d.** Main aquaculture countries in 2010 (FAO 2011).

4 Sustainable Aquaculture Techniques

In order to identify potential ways to decrease unnecessary outflows from aquaculture systems in the United States, the National Pollutant Discharge Elimination System (NPDES) permitting is utilized by the United States Environmental Protection Agency (EPA) on a case-by-case basis, typically in larger aquaculture operations. It is difficult to make correlations between aquaculture effluents and environmental impacts without accurate records from each facility. It is crucial to examine the aquaculture practices not only in the United States, but also practices world-wide that can minimize our impacts on aquatic ecosystems and while simultaneously increasing food production.

aquaculture species of high market value or application of aquaponics for their roles in minimizing nutrient loads from aquaculture water discharge and increase farm profits by

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

7

In order to address Best Management Practices (BMPs) in this chapter, we will explore studies from various countries including Thailand, South Africa, United States, Canada, and Australia. These studies address issues regarding how to best manage an aquaculture operation, while minimizing environmental effects and maintain profitable output. BMPs reflect the most technically practical and economically feasible methods which reduce environmental impacts and limit operation costs at aquaculture facilities. One primary goal is to discuss effluent treatment systems that reduce loads of organic matter, suspended solids, and nutrients to prevent polluting receiving waters. The best method to prevent soil and water quality problems includes selecting a site with appropriate soils and an adequate water supply, and maintaining moderate organism densities and feeding rates (Boyd 1989). Secondary manage‐ ment techniques to prevent soil and water quality imbalances include liming, fertilization, and aeration (Boyd 1989). Agricultural irrigation, created wetlands, settling basins, and biological filters also are practical methods for improving the quality of effluents from ponds that will

In the challenging area of integrating aquaculture Best Management Practices (BMPs), it is imperative that older, proven methods be incorporated with new and innovative ideas. Nearly 40 years ago at Woods Hole, MA and Fort Pierce, FL, Ryther et al. (1975) developed working integrated waste recycling systems utilizing commercially valuable mariculture stocks. Their systems proved so efficient that the final effluent of their system was incapable of supporting further growth or contributing to eutrophication. They suggested that similar systems can be developed for other aquaculture operations to desired needs and purposes. At the Eilat Laboratory in Israel, Neori et al. (1998) established a land-based integrated system that attempted to eliminate external food sources and water exchanges. Avnimelech (2012) provided detailed information on biofloc technology and how this technology can be used to increase farm profit and reduce the nutrient loads of the system. This manual discussed superintensive biofloc shrimp farming and effects of biofloc technology on the sexual development of shrimp broodstock and other practices. The University of Virgin Islands Aquaculture Program (2013) established a biofloc system that produces tilapia every six months by using biologically active and suspended solids serving as the primary waste treatment in the farm. Additional management practices include good aeration, settleable solid removal, pH adjustments and anaerobic denitrification in this system. Even if this type of system may not be as profitable as growers would like, it is easy to see how the basic principles may be applied to a wide range of aquaculture systems. Unfortunately, there is little impetus to develop such systems unless discharge regulations are increased or the systems are shown to be profitable. Coupled with recirculating systems, aquaponics is described as a synergistic growing techni‐ que by the Aquaponics Association (2013) by growing fish and plants together in the same systems. The logic behind this system is that nitrate-nitrogen in fish waste serve as a fertilizer to grow the plants. Once the plants such as lettuce, basil, parsley remove nitrate-nitrogen, this

growing alternate crops.

be discussed within this chapter.

Some other areas of concern regarding aquaculture include, but are not limited to: eutrophi‐ cation, benthic enrichment, habitat alteration, erosion, disease, water quality, and effective implementation of best management practices (Coastal Habitat Protection Plan 2005). With the addition of nutrients and phytoplankton, bacteria and viruses, become even more impor‐ tant in regards to aquaculture water quality concerns. There is a direct correlation between bacterial diversity and nutrient content. Naturally occurring bacteria from the environment and the guts of cultured fish stocks thrive in nutrient-rich waters and the surface layers of sediments (Garland Science 2011). There are various pathways humans can be infected by the zoonotic pathogens including food and contact with contaminated environments (Friend 2006). Viruses are a special concern in non-native stocks, where introduced species and hybrids may bring new viral strains into an area. Even if the potential for introduced viruses is reduced, periodic outbreaks of viruses are not uncommon (Yanong and Erlacher-Reid 2012)Y. *Vibrio* bacteria are major fish pathogens that are particularly problematic in aquaculture settings (Chatterjee and Haldar 2012). Uncontrolled proliferation within farm operations appears to have made a direct contribution in the dispersion of *Vibrio* pathogens in receiving water bodies (Yanong and Erlacher-Reid 2012).

Integrated aquaculture may provide solutions to many of aquaculture's problems. Since no organism lives naturally in a vacuum, stocking production facilities with complementary species is a logical way to integrate multiple species while simultaneously increasing produc‐ tion for a given area. For instance, to control algae and plant growth, grass carp or other herbivores may be raised along with primary stock. Suspension feeding bivalves are useful organisms in filtering phytoplankton. Mori (1979) found that phytoplankton concentrations decreased by 94% after water was passed through eleven oyster rafts. Not only are the secondary stocks beneficial in controlling water quality, they often are valuable food products as well. Integrated multi-trophic aquaculture systems yield not only greater profit and lower cost but also enhance economic stability and provide more acceptable management practices (Bastin 2013).

Various fish farming techniques have been used depending on the species and their growth stage. Some of these include but are not limited to: ponds, open net pens or cages, hatchery, bag and rack, raceways, recirculating systems, shellfish culture, submersible net pens, suspended culture, tuna ranching, and aquaponics. Although our discussion is limited primarily to inland aquaculture practices with particular emphasis on pond aquaculture in this chapter, recirculating aquaculture and aquaponics systems are also discussed as popular aquaculture practices that are frequently employed to eliminate potential nutrient loads to the surrounding environment. More specifically, our discussion on recirculating aquaculture and aquaponics systems is due to use of recirculating aquaculture systems for commercial aquaculture species of high market value or application of aquaponics for their roles in minimizing nutrient loads from aquaculture water discharge and increase farm profits by growing alternate crops.

is utilized by the United States Environmental Protection Agency (EPA) on a case-by-case basis, typically in larger aquaculture operations. It is difficult to make correlations between aquaculture effluents and environmental impacts without accurate records from each facility. It is crucial to examine the aquaculture practices not only in the United States, but also practices world-wide that can minimize our impacts on aquatic ecosystems and while simultaneously

Some other areas of concern regarding aquaculture include, but are not limited to: eutrophi‐ cation, benthic enrichment, habitat alteration, erosion, disease, water quality, and effective implementation of best management practices (Coastal Habitat Protection Plan 2005). With the addition of nutrients and phytoplankton, bacteria and viruses, become even more impor‐ tant in regards to aquaculture water quality concerns. There is a direct correlation between bacterial diversity and nutrient content. Naturally occurring bacteria from the environment and the guts of cultured fish stocks thrive in nutrient-rich waters and the surface layers of sediments (Garland Science 2011). There are various pathways humans can be infected by the zoonotic pathogens including food and contact with contaminated environments (Friend 2006). Viruses are a special concern in non-native stocks, where introduced species and hybrids may bring new viral strains into an area. Even if the potential for introduced viruses is reduced, periodic outbreaks of viruses are not uncommon (Yanong and Erlacher-Reid 2012)Y. *Vibrio* bacteria are major fish pathogens that are particularly problematic in aquaculture settings (Chatterjee and Haldar 2012). Uncontrolled proliferation within farm operations appears to have made a direct contribution in the dispersion of *Vibrio* pathogens in receiving water bodies

Integrated aquaculture may provide solutions to many of aquaculture's problems. Since no organism lives naturally in a vacuum, stocking production facilities with complementary species is a logical way to integrate multiple species while simultaneously increasing produc‐ tion for a given area. For instance, to control algae and plant growth, grass carp or other herbivores may be raised along with primary stock. Suspension feeding bivalves are useful organisms in filtering phytoplankton. Mori (1979) found that phytoplankton concentrations decreased by 94% after water was passed through eleven oyster rafts. Not only are the secondary stocks beneficial in controlling water quality, they often are valuable food products as well. Integrated multi-trophic aquaculture systems yield not only greater profit and lower cost but also enhance economic stability and provide more acceptable management practices

Various fish farming techniques have been used depending on the species and their growth stage. Some of these include but are not limited to: ponds, open net pens or cages, hatchery, bag and rack, raceways, recirculating systems, shellfish culture, submersible net pens, suspended culture, tuna ranching, and aquaponics. Although our discussion is limited primarily to inland aquaculture practices with particular emphasis on pond aquaculture in this chapter, recirculating aquaculture and aquaponics systems are also discussed as popular aquaculture practices that are frequently employed to eliminate potential nutrient loads to the surrounding environment. More specifically, our discussion on recirculating aquaculture and aquaponics systems is due to use of recirculating aquaculture systems for commercial

increasing food production.

6 Sustainable Aquaculture Techniques

(Yanong and Erlacher-Reid 2012).

(Bastin 2013).

In order to address Best Management Practices (BMPs) in this chapter, we will explore studies from various countries including Thailand, South Africa, United States, Canada, and Australia. These studies address issues regarding how to best manage an aquaculture operation, while minimizing environmental effects and maintain profitable output. BMPs reflect the most technically practical and economically feasible methods which reduce environmental impacts and limit operation costs at aquaculture facilities. One primary goal is to discuss effluent treatment systems that reduce loads of organic matter, suspended solids, and nutrients to prevent polluting receiving waters. The best method to prevent soil and water quality problems includes selecting a site with appropriate soils and an adequate water supply, and maintaining moderate organism densities and feeding rates (Boyd 1989). Secondary manage‐ ment techniques to prevent soil and water quality imbalances include liming, fertilization, and aeration (Boyd 1989). Agricultural irrigation, created wetlands, settling basins, and biological filters also are practical methods for improving the quality of effluents from ponds that will be discussed within this chapter.

In the challenging area of integrating aquaculture Best Management Practices (BMPs), it is imperative that older, proven methods be incorporated with new and innovative ideas. Nearly 40 years ago at Woods Hole, MA and Fort Pierce, FL, Ryther et al. (1975) developed working integrated waste recycling systems utilizing commercially valuable mariculture stocks. Their systems proved so efficient that the final effluent of their system was incapable of supporting further growth or contributing to eutrophication. They suggested that similar systems can be developed for other aquaculture operations to desired needs and purposes. At the Eilat Laboratory in Israel, Neori et al. (1998) established a land-based integrated system that attempted to eliminate external food sources and water exchanges. Avnimelech (2012) provided detailed information on biofloc technology and how this technology can be used to increase farm profit and reduce the nutrient loads of the system. This manual discussed superintensive biofloc shrimp farming and effects of biofloc technology on the sexual development of shrimp broodstock and other practices. The University of Virgin Islands Aquaculture Program (2013) established a biofloc system that produces tilapia every six months by using biologically active and suspended solids serving as the primary waste treatment in the farm. Additional management practices include good aeration, settleable solid removal, pH adjustments and anaerobic denitrification in this system. Even if this type of system may not be as profitable as growers would like, it is easy to see how the basic principles may be applied to a wide range of aquaculture systems. Unfortunately, there is little impetus to develop such systems unless discharge regulations are increased or the systems are shown to be profitable. Coupled with recirculating systems, aquaponics is described as a synergistic growing techni‐ que by the Aquaponics Association (2013) by growing fish and plants together in the same systems. The logic behind this system is that nitrate-nitrogen in fish waste serve as a fertilizer to grow the plants. Once the plants such as lettuce, basil, parsley remove nitrate-nitrogen, this water returns to the fish environment so no water has to be discharged to the environment (The Aquaponics Association 2013).

drug residues harmful to aquatic life (SAMS 2013). Science Daily (2013) describes eutrophica‐ tion as the enrichment of an ecosystem with nitrogen or phosphorus, or a mixture of both chemicals. Regarding eutrophication and healthy aquatic system, the water quality variables with the highest concentrations in pond effluents relative to the normal criteria allowed by National Pollution Discharge Elimination System (NPDES) permits are our major concern and discussed in detail throughout the chapter. This includes total dissolved solids, total phos‐ phorus, and biochemical oxygen demand. Eutrophication is the leading problem associated with nutrient runoff of phosphorus (Boyd 2001). Resulting phytoplankton blooms often create an increase in organic matter by two to four times the original amount of metabolic wastes,

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

9

As we previously stated, total dissolved solids, total phosphorus, and biochemical oxygen demand are the water quality variables that have the highest concentrations in pond effluents relative to NPDES permits for standard water quality for effluents (Shireman and Cichra 1991; Schwartz and Boyd 1994a). These variables have especially high concentrations in the final 25% of effluent when ponds are completely drained (Boyd 1978; Schwartz and Boyd 1994b; Seok et al. 1995). According to Boyd et al. (2000), total suspended solids and total phosphorus are water quality variables consistently higher in concentration in aquaculture effluents than the typical concentration in effluents of other industries in the southern United States. In comparable studies of the effects of aquaculture effluents on water quality from catfish facilities between Alabama and Mississippi, Hariyadi et al. (1994) found greater concentrations of suspended clay, turbidity, dissolved inorganic phosphorus, total ammonia, and nitrite concentrations. Although effluents from aquaculture facilities with less commonly cultured species have not been studied as thoroughly as channel catfish pond effluents, it is reasonable to assume discharge off aquaculture ponds with other benthic species will have similar nutrient concentrations because of feeding and intensive culture methods. However, the methods of management will vary depending on the species cultured and life stage being cultured. Methods need to be developed for reducing effluent volume and improving the quality of aquaculture effluents in general. Developing specific procedures for removing or reducing suspended solids, total phosphorus and biochemical oxygen demand from pond effluent are especially important. The goal is to develop methods to treat aquaculture discharge so that the materials meet NPDES water quality criteria for effluents (Boyd et al. 1998).

Many techniques have been developed that can be effective in reducing the volume and enhancing the quality of aquaculture pond effluent. These methods include but are not limited to the use of proper site evaluation and design procedures, good construction practices, use of high quality feeds and good feed management, attention to erosion control, moderate stocking densities, reduction in water exchange, seine harvest, and the use of settling basins (Boyd and Tucker 1998). Suitable methods for removing aquaculture waste within effluents include sedimentation, filtration, and mechanical separation using screens, chemical and biological amendments, and using high quality fish-meal (Wheaton 1977, Boyd et al. 1998, Coloso et al. 2001). Boyd and Tucker (1998) summarized methods for using and improving effluents from ponds. These methods have advanced over the years and include hydroponics, irrigation, the development of culture medium for other aquatic organisms, constructed

multiplying the negative effects (Boyd and Queiroz 1997).

Integrated aquaculture is nothing new and has been used for thousands of years although their uses commercially are most recent (Bennett et al. 2012). With the demand for high protein food diet, limited resources and environmental concerns, integration provides a solution to maximize profits and reduce potential impacts on the surrounding habitat. By culturing multiple species, farmers can offset the negative impacts in the environment. In China, farmers have been using integrated farming practices for years, although not at the commercial scale at the present time, and have maximized the resource uses to feed their growing population (Bennett et al. 2012).

In this chapter, we will further discuss water quality, eutrophication and disease causing organisms concerns along with effective treatment methods for aquaculture effluents and best farm management strategies in the interest of giving aquaculture professionals, educational professionals, students, and decision-makers a better perspective on how to move forward in a rapidly-changing global market.

Aquaculture will play very important role in feeding about nine billion people by the year 2050 (Nutreco 2011). Meeting this demand can only be possible if seafood is farmed in a sustainable way, both environmentally and economically. As we work together we will find better ways to improve quantity, quality, and sustainability of food supply within the aquaculture sector.

#### **2. Issues of special concern in aquaculture**

#### **2.1. Water quality and eutrophication**

The highly variable nature of any aquatic environment is often held in a delicate balance by several mechanisms which are common in undisturbed habitats. When anthropogenic stressors (e.g. discharge from aquaculture, farming practices) are introduced into the envi‐ ronment this delicate balance can be disturbed. As a result of an increased aquaculture activity and related farming practices, the effects of seepage and discharge off farms can disturb the healthy conditions of aquatic ecosystems within entire watersheds As described by SAMS (2013), high concentrations of nutrients may lead to deleterious effects, especially in receiving water bodies with the limited water exchange such as lochs. The harmful effects that occur come about as a result of changes in microbial growth and community composition. These changes often result in toxic conditions arising from harmful algae blooms, de-oxygenation of water and sediments from excessive microbial growth, and the transfer/concentration of toxic compounds through the food web. Dissolved and particulate materials in estuaries and coastal environment increase from both natural and anthropogenic sources such as rivers, sewage outfalls, agriculture, and fish farms. These dissolved and particulate materials provide nutrients for phytoplankton and bacteria because they are sources rich in carbon, nitrogen, and phosphorus. Particulate and dissolved materials can also be carriers of heavy metals and drug residues harmful to aquatic life (SAMS 2013). Science Daily (2013) describes eutrophica‐ tion as the enrichment of an ecosystem with nitrogen or phosphorus, or a mixture of both chemicals. Regarding eutrophication and healthy aquatic system, the water quality variables with the highest concentrations in pond effluents relative to the normal criteria allowed by National Pollution Discharge Elimination System (NPDES) permits are our major concern and discussed in detail throughout the chapter. This includes total dissolved solids, total phos‐ phorus, and biochemical oxygen demand. Eutrophication is the leading problem associated with nutrient runoff of phosphorus (Boyd 2001). Resulting phytoplankton blooms often create an increase in organic matter by two to four times the original amount of metabolic wastes, multiplying the negative effects (Boyd and Queiroz 1997).

water returns to the fish environment so no water has to be discharged to the environment

Integrated aquaculture is nothing new and has been used for thousands of years although their uses commercially are most recent (Bennett et al. 2012). With the demand for high protein food diet, limited resources and environmental concerns, integration provides a solution to maximize profits and reduce potential impacts on the surrounding habitat. By culturing multiple species, farmers can offset the negative impacts in the environment. In China, farmers have been using integrated farming practices for years, although not at the commercial scale at the present time, and have maximized the resource uses to feed their growing population

In this chapter, we will further discuss water quality, eutrophication and disease causing organisms concerns along with effective treatment methods for aquaculture effluents and best farm management strategies in the interest of giving aquaculture professionals, educational professionals, students, and decision-makers a better perspective on how to move forward in

Aquaculture will play very important role in feeding about nine billion people by the year 2050 (Nutreco 2011). Meeting this demand can only be possible if seafood is farmed in a sustainable way, both environmentally and economically. As we work together we will find better ways to improve quantity, quality, and sustainability of food supply within the

The highly variable nature of any aquatic environment is often held in a delicate balance by several mechanisms which are common in undisturbed habitats. When anthropogenic stressors (e.g. discharge from aquaculture, farming practices) are introduced into the envi‐ ronment this delicate balance can be disturbed. As a result of an increased aquaculture activity and related farming practices, the effects of seepage and discharge off farms can disturb the healthy conditions of aquatic ecosystems within entire watersheds As described by SAMS (2013), high concentrations of nutrients may lead to deleterious effects, especially in receiving water bodies with the limited water exchange such as lochs. The harmful effects that occur come about as a result of changes in microbial growth and community composition. These changes often result in toxic conditions arising from harmful algae blooms, de-oxygenation of water and sediments from excessive microbial growth, and the transfer/concentration of toxic compounds through the food web. Dissolved and particulate materials in estuaries and coastal environment increase from both natural and anthropogenic sources such as rivers, sewage outfalls, agriculture, and fish farms. These dissolved and particulate materials provide nutrients for phytoplankton and bacteria because they are sources rich in carbon, nitrogen, and phosphorus. Particulate and dissolved materials can also be carriers of heavy metals and

(The Aquaponics Association 2013).

8 Sustainable Aquaculture Techniques

a rapidly-changing global market.

**2. Issues of special concern in aquaculture**

**2.1. Water quality and eutrophication**

(Bennett et al. 2012).

aquaculture sector.

As we previously stated, total dissolved solids, total phosphorus, and biochemical oxygen demand are the water quality variables that have the highest concentrations in pond effluents relative to NPDES permits for standard water quality for effluents (Shireman and Cichra 1991; Schwartz and Boyd 1994a). These variables have especially high concentrations in the final 25% of effluent when ponds are completely drained (Boyd 1978; Schwartz and Boyd 1994b; Seok et al. 1995). According to Boyd et al. (2000), total suspended solids and total phosphorus are water quality variables consistently higher in concentration in aquaculture effluents than the typical concentration in effluents of other industries in the southern United States. In comparable studies of the effects of aquaculture effluents on water quality from catfish facilities between Alabama and Mississippi, Hariyadi et al. (1994) found greater concentrations of suspended clay, turbidity, dissolved inorganic phosphorus, total ammonia, and nitrite concentrations. Although effluents from aquaculture facilities with less commonly cultured species have not been studied as thoroughly as channel catfish pond effluents, it is reasonable to assume discharge off aquaculture ponds with other benthic species will have similar nutrient concentrations because of feeding and intensive culture methods. However, the methods of management will vary depending on the species cultured and life stage being cultured. Methods need to be developed for reducing effluent volume and improving the quality of aquaculture effluents in general. Developing specific procedures for removing or reducing suspended solids, total phosphorus and biochemical oxygen demand from pond effluent are especially important. The goal is to develop methods to treat aquaculture discharge so that the materials meet NPDES water quality criteria for effluents (Boyd et al. 1998).

Many techniques have been developed that can be effective in reducing the volume and enhancing the quality of aquaculture pond effluent. These methods include but are not limited to the use of proper site evaluation and design procedures, good construction practices, use of high quality feeds and good feed management, attention to erosion control, moderate stocking densities, reduction in water exchange, seine harvest, and the use of settling basins (Boyd and Tucker 1998). Suitable methods for removing aquaculture waste within effluents include sedimentation, filtration, and mechanical separation using screens, chemical and biological amendments, and using high quality fish-meal (Wheaton 1977, Boyd et al. 1998, Coloso et al. 2001). Boyd and Tucker (1998) summarized methods for using and improving effluents from ponds. These methods have advanced over the years and include hydroponics, irrigation, the development of culture medium for other aquatic organisms, constructed wetlands, settling basins, biological filters, nutrient removal by water hyacinths or other floating macrophytes, and fluidized-bed filters. Queiroz et al. (1998) tested the effectiveness of various bioorganic catalysts1 on water quality, soil organic carbon, and channel catfish production and recorded higher concentrations of dissolved oxygen and a slight increase in phytoplankton productivity.

2008). Boesch et al. (2001) stated "in addition to the obvious requirements for fish and shellfish growth, lack of oxygen also limits nitrification and subsequent denitrification, compounding the effects of eutrophication. Rivers, lakes, estuaries, and coastal areas receiving the nutrient rich water with low dissolved oxygen become impaired and ecosystem health is compromised more often." More often dissolved oxygen is the limiting condition in waters of intensive pond aquaculture facilities and this condition is mostly as a result of poor management and bad

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11

**Figure 2.** Relationships among phytoplankton density, dissolved oxygen, and light penetration in fish ponds (Boyd

Boyd and Musig (1992) summarized that the discharge of effluents below the permitted limits are very important. Effluent discharges by one farm may contaminate the water source of another farm downstream. Therefore, if intake water used for filling pond and for water exchanges are highly polluted, water quality problems can occur at even very low feeding

planning (Boyd 1998).

1990).

According Boyd and Tucker (1998), the most efficient procedures for treating effluents appear to be irrigation, settling basins, and wetlands. Filter-feeding fish, mollusks and certain plants have been successfully cultured in aquaculture pond effluents to reduce nutrient and organic matter loadings. Tucker et al. (1996) reported that harvesting fish without draining ponds between fish crops maintained water storage potential and reduced average annual nutrient and organic matter discharge by over 60% relative to annually drained ponds.

Unlike nitrogen or carbon, phosphorus can only enter the watershed via land-use runoff and coastal areas (Thompson and Polz 2006). Release of phosphorus into the aquatic environment is dependent on soil type, landscape slope, rainfall intensity, and the particle trapping capabilities of the watershed in question because phosphorus is considered a particle bound nutrient. Soluble Reactive Phosphorus (SRP) is a biologically available inorganic form of phosphorus often measured in estuarine systems to better assess the available phosphorus used by the aquatic organisms (Mitsch and Gosselink 2007). Through their bioactivity, oysters transport more phosphorus to sediments than they re-mineralize through metabolism (Dame et al. 1989). Mitsch and Gosselink (2007) stated that phosphorus removal within a system occurs through algal cell absorption and co-precipitation of phosphates in high pH waters. Therefore oysters and algae, both of which have been raised in an aquaculture setting, may provide an economical solution to improving the condition of certain effluents.

One of the most efficient methods for removing excess nutrients in water is seaweed culture. Seaweeds absorb the dissolved nutrients, nitrate and phosphate through their whole plant body. The nutrient absorption is very efficient as seaweeds are immersed and waste no energy for uptake and transport of either water or nutrients (SES 2013).

The most severe consequence of eutrophication on estuarine ecosystems is the depletion of dissolved oxygen (Becker et al. 2008) (Figure 2). Oxygen is consumed during the decomposi‐ tion of organic matter, resulting in hypoxic and/or anoxic conditions unless dissolved oxygen is replaced. Excess organic matter increases microbial populations which utilize the available dissolved oxygen in order to break down the organic matter. Along with the increase in microbial populations, increases in nutrients from organic matter result in phytoplankton blooms. Phytoplankton cannot produce oxygen at night but instead uses up dissolved oxygen in the system that might otherwise be needed by various other resident organisms. If these conditions are sustained over time this can lead to low levels of dissolved oxygen referred to as a hypoxic condition (NOAA 1998). Low dissolved oxygen levels, specifically less than 5mg/ L, can result in large fish kills in estuarine waters with limited tidal or water exchange activities and can have a detrimental impact on various commercially important species (Becker et al.

<sup>1</sup> Bioorganic catalysts are catalytic compounds that enhance the biological conversion abilities that would otherwise occur naturally (ICAP Bio-Organic 2013).

2008). Boesch et al. (2001) stated "in addition to the obvious requirements for fish and shellfish growth, lack of oxygen also limits nitrification and subsequent denitrification, compounding the effects of eutrophication. Rivers, lakes, estuaries, and coastal areas receiving the nutrient rich water with low dissolved oxygen become impaired and ecosystem health is compromised more often." More often dissolved oxygen is the limiting condition in waters of intensive pond aquaculture facilities and this condition is mostly as a result of poor management and bad planning (Boyd 1998).

wetlands, settling basins, biological filters, nutrient removal by water hyacinths or other floating macrophytes, and fluidized-bed filters. Queiroz et al. (1998) tested the effectiveness

production and recorded higher concentrations of dissolved oxygen and a slight increase in

According Boyd and Tucker (1998), the most efficient procedures for treating effluents appear to be irrigation, settling basins, and wetlands. Filter-feeding fish, mollusks and certain plants have been successfully cultured in aquaculture pond effluents to reduce nutrient and organic matter loadings. Tucker et al. (1996) reported that harvesting fish without draining ponds between fish crops maintained water storage potential and reduced average annual nutrient

Unlike nitrogen or carbon, phosphorus can only enter the watershed via land-use runoff and coastal areas (Thompson and Polz 2006). Release of phosphorus into the aquatic environment is dependent on soil type, landscape slope, rainfall intensity, and the particle trapping capabilities of the watershed in question because phosphorus is considered a particle bound nutrient. Soluble Reactive Phosphorus (SRP) is a biologically available inorganic form of phosphorus often measured in estuarine systems to better assess the available phosphorus used by the aquatic organisms (Mitsch and Gosselink 2007). Through their bioactivity, oysters transport more phosphorus to sediments than they re-mineralize through metabolism (Dame et al. 1989). Mitsch and Gosselink (2007) stated that phosphorus removal within a system occurs through algal cell absorption and co-precipitation of phosphates in high pH waters. Therefore oysters and algae, both of which have been raised in an aquaculture setting, may

One of the most efficient methods for removing excess nutrients in water is seaweed culture. Seaweeds absorb the dissolved nutrients, nitrate and phosphate through their whole plant body. The nutrient absorption is very efficient as seaweeds are immersed and waste no energy

The most severe consequence of eutrophication on estuarine ecosystems is the depletion of dissolved oxygen (Becker et al. 2008) (Figure 2). Oxygen is consumed during the decomposi‐ tion of organic matter, resulting in hypoxic and/or anoxic conditions unless dissolved oxygen is replaced. Excess organic matter increases microbial populations which utilize the available dissolved oxygen in order to break down the organic matter. Along with the increase in microbial populations, increases in nutrients from organic matter result in phytoplankton blooms. Phytoplankton cannot produce oxygen at night but instead uses up dissolved oxygen in the system that might otherwise be needed by various other resident organisms. If these conditions are sustained over time this can lead to low levels of dissolved oxygen referred to as a hypoxic condition (NOAA 1998). Low dissolved oxygen levels, specifically less than 5mg/ L, can result in large fish kills in estuarine waters with limited tidal or water exchange activities and can have a detrimental impact on various commercially important species (Becker et al.

1 Bioorganic catalysts are catalytic compounds that enhance the biological conversion abilities that would otherwise occur

and organic matter discharge by over 60% relative to annually drained ponds.

provide an economical solution to improving the condition of certain effluents.

for uptake and transport of either water or nutrients (SES 2013).

on water quality, soil organic carbon, and channel catfish

of various bioorganic catalysts1

phytoplankton productivity.

10 Sustainable Aquaculture Techniques

naturally (ICAP Bio-Organic 2013).

**Figure 2.** Relationships among phytoplankton density, dissolved oxygen, and light penetration in fish ponds (Boyd 1990).

Boyd and Musig (1992) summarized that the discharge of effluents below the permitted limits are very important. Effluent discharges by one farm may contaminate the water source of another farm downstream. Therefore, if intake water used for filling pond and for water exchanges are highly polluted, water quality problems can occur at even very low feeding rates. Poor water quality in incoming water may increase the risk of disease transfer and intensity of any potential diseases. Pollution load created by aquaculture should not exceed the assimilative capacity of the ponds and water supply of that area. Boyd and Queiroz (1997) stated that receiving stream waters assimilate pollutants through various physical, chemical, and biological processes. As long as the pollution load in the pond effluents does not exceed the assimilative capacity of a water body, adverse environmental changes should not occur.

and keeping the facility clean and well organized are some of the key factors to reduce various stressors which fish are exposed to and will reduce the likelihood of a disease problem. Water quality problems listed as critical are: temperature, dissolved oxygen, pH, alkalinity, hardness, un-ionized ammonia-NH3, nitrite, and potentially toxic substances including heavy metals,

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**Figure 3.** Common routes for potential transmission of infectious diseases and how they are transferred from animals

Limited to the few intensively studied commercial aquaculture species, there is currently a large gap in our knowledge concerning diseases associated with other species with potential commercial and ecological importance. Included in this group are Enterobacteriaceae and fecal *Streptococci*, which threaten swimming beaches as well as wild fauna and can easily spread

to human and water to human and animal and others (Friend 2006).

drug residues, pesticides, and CO2 (Bowser 2012).

Boyd (1995a) suggests that the best method to prevent soil and water quality problems is by selecting a site with good soils, an adequate supply of high quality water and to maintain moderate levels of fish densities and feeding rates. Secondary management techniques to prevent soil and water quality imbalances include liming, fertilization and aeration. Sedimen‐ tation basins may still needed to be considered to prevent ponds from discharging excess sediments.

Similar to nitrogen, phosphorus and dissolved oxygen, pH, alkalinity, hardness, salinity and ammonia are a few other water quality variables that require constant monitoring in modern aquaculture systems because these variables may become a threat to the habitat in receiving waters (Ozbay 2002). The Best Management Practices section at the end of this chapter describes in detail how the impacts of aquaculture farming are minimized and how striving for sustainability is the key for the long term profitable and environmental friendly farming practices.

#### **2.2. Pathogens and disease risks**

As we stated previously, aquaculture refers to culture of organisms (animals or plants) under controlled or semi-controlled conditions. In order to be commercially successful, aquaculture establishments generally have to operate at high density and under conditions which facilitate fast growth. Whatever the species or the type of aquaculture operation (i.e. pond, recirculation, aquaponics, and raceways) in question, maintaining good stock health is the key to successfully operating a profitable aquaculture facility (Bowser 2012). Even when present in low numbers, most disease-causing agents including bacteria, viruses, parasites, and fungi can cause problems and have significant impacts on the fish and associated habitat (Bowser 2012).

The presence of bacteria or viruses in the aquaculture system can be detrimental to the overall operation and surrounding environment. As Pietrak et al. (2010) stated, infection and disease can invade from multiple sources of water, wild fish or shellfish, newly-introduced farmed fish or shellfish, contaminated equipment, predators (i.e. birds, turtles), and human visitors. Newly introduced disease-causing pathogens can lead to production loss from mortality, lost marketability of products, and an inability to transport the product to other locations and farms (Pietrak et al. 2010).

Most diseases and related issues can be prevented by using proper management techniques. It is easier and more cost-effective to prevent disease-causing pathogens from entering the systems than it is treating the pathogens after they have already been introduced into the facility (Bowser 2012). As Bowser (2012) stated, maintaining optimum water quality conditions and keeping the facility clean and well organized are some of the key factors to reduce various stressors which fish are exposed to and will reduce the likelihood of a disease problem. Water quality problems listed as critical are: temperature, dissolved oxygen, pH, alkalinity, hardness, un-ionized ammonia-NH3, nitrite, and potentially toxic substances including heavy metals, drug residues, pesticides, and CO2 (Bowser 2012).

rates. Poor water quality in incoming water may increase the risk of disease transfer and intensity of any potential diseases. Pollution load created by aquaculture should not exceed the assimilative capacity of the ponds and water supply of that area. Boyd and Queiroz (1997) stated that receiving stream waters assimilate pollutants through various physical, chemical, and biological processes. As long as the pollution load in the pond effluents does not exceed the assimilative capacity of a water body, adverse environmental changes should

Boyd (1995a) suggests that the best method to prevent soil and water quality problems is by selecting a site with good soils, an adequate supply of high quality water and to maintain moderate levels of fish densities and feeding rates. Secondary management techniques to prevent soil and water quality imbalances include liming, fertilization and aeration. Sedimen‐ tation basins may still needed to be considered to prevent ponds from discharging excess

Similar to nitrogen, phosphorus and dissolved oxygen, pH, alkalinity, hardness, salinity and ammonia are a few other water quality variables that require constant monitoring in modern aquaculture systems because these variables may become a threat to the habitat in receiving waters (Ozbay 2002). The Best Management Practices section at the end of this chapter describes in detail how the impacts of aquaculture farming are minimized and how striving for sustainability is the key for the long term profitable and environmental friendly farming

As we stated previously, aquaculture refers to culture of organisms (animals or plants) under controlled or semi-controlled conditions. In order to be commercially successful, aquaculture establishments generally have to operate at high density and under conditions which facilitate fast growth. Whatever the species or the type of aquaculture operation (i.e. pond, recirculation, aquaponics, and raceways) in question, maintaining good stock health is the key to successfully operating a profitable aquaculture facility (Bowser 2012). Even when present in low numbers, most disease-causing agents including bacteria, viruses, parasites, and fungi can cause problems and have significant impacts on the fish and associated habitat (Bowser 2012).

The presence of bacteria or viruses in the aquaculture system can be detrimental to the overall operation and surrounding environment. As Pietrak et al. (2010) stated, infection and disease can invade from multiple sources of water, wild fish or shellfish, newly-introduced farmed fish or shellfish, contaminated equipment, predators (i.e. birds, turtles), and human visitors. Newly introduced disease-causing pathogens can lead to production loss from mortality, lost marketability of products, and an inability to transport the product to other locations and farms

Most diseases and related issues can be prevented by using proper management techniques. It is easier and more cost-effective to prevent disease-causing pathogens from entering the systems than it is treating the pathogens after they have already been introduced into the facility (Bowser 2012). As Bowser (2012) stated, maintaining optimum water quality conditions

not occur.

12 Sustainable Aquaculture Techniques

sediments.

practices.

(Pietrak et al. 2010).

**2.2. Pathogens and disease risks**

**Figure 3.** Common routes for potential transmission of infectious diseases and how they are transferred from animals to human and water to human and animal and others (Friend 2006).

Limited to the few intensively studied commercial aquaculture species, there is currently a large gap in our knowledge concerning diseases associated with other species with potential commercial and ecological importance. Included in this group are Enterobacteriaceae and fecal *Streptococci*, which threaten swimming beaches as well as wild fauna and can easily spread and persist in natural environment (Figueras et al. 2000). Viruses are a special concern in nonnative stocks, where introduced species and hybrids may bring new viral strains into an area. Pathogenic bacteria such as ones belonging to the genus *Vibrio* have caused devastating disease outbreaks in shellfish larviculture (Thompson et al. 2004). These outbreaks resulted in substantial financial losses for commercial hatcheries and culture facilities (Austin 2010).

Yanong and Erlacher-Reid (2012) stated biosecurity in aquaculture as the best practice to minimize the risk of introducing an infectious disease into a facility. Likewise biosecurity minimizes the risks where a diseased fish or infectious agents leaves the facility and is able to spread to other facilities and infect other susceptible species. The biosecurity goals they discussed include: animal management, pathogen management, and people management. — According to Yanong and Erlacher-Reid (2012), the main management practice is to obtain healthy animals (eggs, fry, juveniles, brood stocks) and optimize their health and immunity through good husbandry practices. Pathogen management primarily includes prevention, reduction and elimination of pathogens. While preventative practices can be cost-effective and easy to follow through, pathogen reduction and elimination can be very expensive and may

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

15

People management practices include educating everyone involved including visitors and suppliers. Well planned and coordinated facility work schedules and periodic worker trainings are the keys to ensure that people follow tight biosecurity plans and keep it in their minds as they complete daily tasks (Yanong and Erlacher-Reid 2012). There are various factors which play important roles for facilitating pathogen entries into a facility, spreading from unit to another, from one species to another in the facility and finally infect the whole facility. These factors depend on the species of concern, their immune status, life stages and susceptibility to pathogens, husbandry practices, and water quality conditions. In addition, understanding further characteristics of a particular pathogen (i.e. biology and life cycle of pathogen, reservoir potential), its survivorship in the facility, on the tools and equipment, application of the approved treatment options, understanding regulatory status and compliance with biosecur‐ ity protocols are additional biosecurity measures to minimize disease outbreak risks in a

One application particularly useful for treating and disinfecting pond bottoms is to dry out ponds for one or two weeks, or longer if necessary (Boyd et al. 2012). As Boyd et al. (2012) states, parasites and disease organisms and their vectors survive in areas where puddles and wet areas remain or when the area has constant rain. When those areas cannot be dried they can be treated with burnt lime, calcium oxide, hydrated lime or calcium hydroxide. The purpose of these various chemical applications is to raise the pH above 10 to kill potentially harmful organisms. Boyd et al. (2012) suggested until natural food organisms have reestablished, stocking shrimp or fingerling fish in the ponds should be avoided due to the toxicity risks of lime residues. Coagulation with alum, limestone or polyelectrolytes is effective

A well thought out biosecurity plan is necessary to minimize the potential for catastrophic losses from infectious disease in the facility. Knowledge is the key to understanding the risks associated with disease outbreaks. Knowing your animal, where your fish comes from, water source of the facility, how pathogens may potentially enter, live and persist in the facility, good husbandry practices, diagnostic tools and legal treatment options (Yanong and Erlacher-Reid 2012). Further practices include: having experts aid in the development of a biosecurity plan (production specialist, animal health professional, engineer, scientists…etc.), planning the facility sanitation, disinfection and system management schemes, good water quality moni‐

cause further environmental and economic damages if the methods fail.

in reducing virus counts (Boyd and Tucker 1998).

facility.

Numerous *Vibrio* species present in the aquatic environment are also common human pathogens including *V. cholerae*, *V.vulnificus*, and *V. parahaemolyticus* and can cause wound infections and gastro-intestinal disease (Austin 2010). Urakawa and Rivera (2006) and Austin (2006) reported other species such as *V.anguillarum*, *V. logei*, and *V. tapetis* as finfish and bivalve pathogens known to cause vibriosis, disease, and in some cases mortality in aquaculture facilities and hatcheries.

Similar to fish and shellfish pathogens, *V. shilonii* and *V. coralliilyticus* are a few *Vibrio* species linked to coral reef bleaching events, having detrimental impacts on the health and biodiversity of highly productive ecosystems (Thompson et al. 2004). Thompson and Polz (2006) reported that *Vibrio* play an important role in nutrient cycling in the aquatic environment by excreting different chitin-degrading enzymes when attached to zooplankton. This could also be devastating to commercial species such as crabs and lobster which rely on chitin exoskeletons. Thompson and Polz (2006) reported *V. cholerae* to occur as a free living form in the water column and attached to zooplankton. The direct relationship between nutrient enrichment via eutrophication and the occurrence of *V. cholerae* in estuarine and coastal environments calls for further investigations (Grimes 1991). Threats of shellfish-borne disease from *V. parahaemo‐ lyticus* (Vp) and *V. vulnificus* (Vv) are of significant public health concern in the United States (Baker-Austin et al. 2010). Increased *Vibrio*-related disease incidence and changes in *Vibrio* populations are a likely consequence of changing environmental conditions (Lipp et al. 2002). As Friend (2006) show in Figure 3, humans can be contaminated by eating seafood grown in infected waters. Escaped *Vibrio* from aquaculture can disrupt natural systems and can be a potential threat to wildlife or livestock. Infected wildlife or livestock entering into systems can be a threat the aquatic health as well (Friend 2006)Although our discussion in this chapter is limited to bacterial pathogens, other pathogens causing diseases in fish includes viral infec‐ tions, fungal infections, water mold infections, such as *Saprolegnia* sp., metazoan parasites, such as copepods, unicellular parasites, such as *Ichthyophthirius multifiliis* (Moyle and Cech 2004).

Preventive measures are the most cost effective and practical ways to minimize disease outbreaks in these types of establishments. The common problems can be avoided by strictly adhering to the following practices: avoiding the movement of animals and farm traffic, having a good background check of the stocks brought into the farm, or certified stocks "pathogen free", utilizing good quality pasteurized feeds and tools to monitor water quality, and keeping good farm records (Pietrak et al. 2010).

Water quality has a direct and vital impact on the transmission of pathogens. Good water quality reduces the risks of transmission and mortality rates. Regardless of outbreak history at a farm, each farm should develop a biosecurity plan and the plan must be adapted to the specific farm and operation, location and culture method, consider existing threats in the area and avoid environmental contaminant risks (Pietrak et al. 2010).

Yanong and Erlacher-Reid (2012) stated biosecurity in aquaculture as the best practice to minimize the risk of introducing an infectious disease into a facility. Likewise biosecurity minimizes the risks where a diseased fish or infectious agents leaves the facility and is able to spread to other facilities and infect other susceptible species. The biosecurity goals they discussed include: animal management, pathogen management, and people management. — According to Yanong and Erlacher-Reid (2012), the main management practice is to obtain healthy animals (eggs, fry, juveniles, brood stocks) and optimize their health and immunity through good husbandry practices. Pathogen management primarily includes prevention, reduction and elimination of pathogens. While preventative practices can be cost-effective and easy to follow through, pathogen reduction and elimination can be very expensive and may cause further environmental and economic damages if the methods fail.

and persist in natural environment (Figueras et al. 2000). Viruses are a special concern in nonnative stocks, where introduced species and hybrids may bring new viral strains into an area. Pathogenic bacteria such as ones belonging to the genus *Vibrio* have caused devastating disease outbreaks in shellfish larviculture (Thompson et al. 2004). These outbreaks resulted in substantial financial losses for commercial hatcheries and culture facilities (Austin 2010).

Numerous *Vibrio* species present in the aquatic environment are also common human pathogens including *V. cholerae*, *V.vulnificus*, and *V. parahaemolyticus* and can cause wound infections and gastro-intestinal disease (Austin 2010). Urakawa and Rivera (2006) and Austin (2006) reported other species such as *V.anguillarum*, *V. logei*, and *V. tapetis* as finfish and bivalve pathogens known to cause vibriosis, disease, and in some cases mortality in aquaculture

Similar to fish and shellfish pathogens, *V. shilonii* and *V. coralliilyticus* are a few *Vibrio* species linked to coral reef bleaching events, having detrimental impacts on the health and biodiversity of highly productive ecosystems (Thompson et al. 2004). Thompson and Polz (2006) reported that *Vibrio* play an important role in nutrient cycling in the aquatic environment by excreting different chitin-degrading enzymes when attached to zooplankton. This could also be devastating to commercial species such as crabs and lobster which rely on chitin exoskeletons. Thompson and Polz (2006) reported *V. cholerae* to occur as a free living form in the water column and attached to zooplankton. The direct relationship between nutrient enrichment via eutrophication and the occurrence of *V. cholerae* in estuarine and coastal environments calls for further investigations (Grimes 1991). Threats of shellfish-borne disease from *V. parahaemo‐ lyticus* (Vp) and *V. vulnificus* (Vv) are of significant public health concern in the United States (Baker-Austin et al. 2010). Increased *Vibrio*-related disease incidence and changes in *Vibrio* populations are a likely consequence of changing environmental conditions (Lipp et al. 2002). As Friend (2006) show in Figure 3, humans can be contaminated by eating seafood grown in infected waters. Escaped *Vibrio* from aquaculture can disrupt natural systems and can be a potential threat to wildlife or livestock. Infected wildlife or livestock entering into systems can be a threat the aquatic health as well (Friend 2006)Although our discussion in this chapter is limited to bacterial pathogens, other pathogens causing diseases in fish includes viral infec‐ tions, fungal infections, water mold infections, such as *Saprolegnia* sp., metazoan parasites, such as copepods, unicellular parasites, such as *Ichthyophthirius multifiliis* (Moyle and Cech 2004). Preventive measures are the most cost effective and practical ways to minimize disease outbreaks in these types of establishments. The common problems can be avoided by strictly adhering to the following practices: avoiding the movement of animals and farm traffic, having a good background check of the stocks brought into the farm, or certified stocks "pathogen free", utilizing good quality pasteurized feeds and tools to monitor water quality, and keeping

Water quality has a direct and vital impact on the transmission of pathogens. Good water quality reduces the risks of transmission and mortality rates. Regardless of outbreak history at a farm, each farm should develop a biosecurity plan and the plan must be adapted to the specific farm and operation, location and culture method, consider existing threats in the area

facilities and hatcheries.

14 Sustainable Aquaculture Techniques

good farm records (Pietrak et al. 2010).

and avoid environmental contaminant risks (Pietrak et al. 2010).

People management practices include educating everyone involved including visitors and suppliers. Well planned and coordinated facility work schedules and periodic worker trainings are the keys to ensure that people follow tight biosecurity plans and keep it in their minds as they complete daily tasks (Yanong and Erlacher-Reid 2012). There are various factors which play important roles for facilitating pathogen entries into a facility, spreading from unit to another, from one species to another in the facility and finally infect the whole facility. These factors depend on the species of concern, their immune status, life stages and susceptibility to pathogens, husbandry practices, and water quality conditions. In addition, understanding further characteristics of a particular pathogen (i.e. biology and life cycle of pathogen, reservoir potential), its survivorship in the facility, on the tools and equipment, application of the approved treatment options, understanding regulatory status and compliance with biosecur‐ ity protocols are additional biosecurity measures to minimize disease outbreak risks in a facility.

One application particularly useful for treating and disinfecting pond bottoms is to dry out ponds for one or two weeks, or longer if necessary (Boyd et al. 2012). As Boyd et al. (2012) states, parasites and disease organisms and their vectors survive in areas where puddles and wet areas remain or when the area has constant rain. When those areas cannot be dried they can be treated with burnt lime, calcium oxide, hydrated lime or calcium hydroxide. The purpose of these various chemical applications is to raise the pH above 10 to kill potentially harmful organisms. Boyd et al. (2012) suggested until natural food organisms have reestablished, stocking shrimp or fingerling fish in the ponds should be avoided due to the toxicity risks of lime residues. Coagulation with alum, limestone or polyelectrolytes is effective in reducing virus counts (Boyd and Tucker 1998).

A well thought out biosecurity plan is necessary to minimize the potential for catastrophic losses from infectious disease in the facility. Knowledge is the key to understanding the risks associated with disease outbreaks. Knowing your animal, where your fish comes from, water source of the facility, how pathogens may potentially enter, live and persist in the facility, good husbandry practices, diagnostic tools and legal treatment options (Yanong and Erlacher-Reid 2012). Further practices include: having experts aid in the development of a biosecurity plan (production specialist, animal health professional, engineer, scientists…etc.), planning the facility sanitation, disinfection and system management schemes, good water quality moni‐ toring, separating populations by their life stages, good planning of disposal and facility rearrangement if necessary. Keeping good records of every operation in the farm (i.e. hazardous waste disposal, chemical use, water quality, fish growth and survivorship, feeding, vaccine application) is also critical in maintaining a productive and healthy facility (Yanong and Erlacher-Reid 2012).

Depending on the type of aquaculture operation (ponds, raceways, cages, or recirculating systems) specific biosecurity measures and management practices should be used. Although fundamental practices are generally the same for many biosecurity plans, practices may vary depending on the species cultured, life stage of the animals, pathogen, type of operation and many others listed earlier. The most important aspect of this plan is to prevent disease outbreaks so that economic and environmental risks are reduced. A biosecurity plan, along with the facility sanitation and disinfection practices, is part of the best management practices used in various successful modern aquaculture settings.

#### **3. Methods of minimizing environmental impacts**

#### **3.1. Wetlands**

There are various definitions on what wetlands are and what best describes wetlands. Kalff (2002) described wetlands as the transition zones between terrestrial and aquatic systems where the soils are waterlogged for at least part of the year or covered by shallow water, and which are typically occupied by rooted aquatic vegetation (*macrophytes*); not all wetlands are physically connected to lakes or lotic systems. Occupying three times the surface area of lakes, wetlands cover about 8.6 million km2 , or 6.4%, of Earth's land area (Shine and de Klemm 1999). There are tremendous benefits associated with the presence of wetlands (USEPA 2006).Figure 4a shows a healthy wetland and Figure 4b demonstrate the schematic represen‐ tation of nutrient cycling in the soil-water column of a wetland. Many biogeochemical transformations occur in wetlands and mostly anaerobic conditions exist at the soil water interface. The plants also create an aerobic zone near the roots and different oxidation reduction mechanisms occur in the soil leading to nutrient cycling (USEPA 2008). Within the aerobic zone surrounding plant roots, ammonia is oxidized to nitrate by a process called nitrification; nitrate is then readily diffused into adjacent anaerobic soil. Nitrate is reduced to molecular nitrogen through denitrification, or may be reduced to ammonium under certain conditions through the dissimilatory nitrate reduction process (Ruckauf et al. 2004; Reddy and Delaune 2008). The nitrogen cycle is shown in Figure 4c.

Transportation and translocation of transformed constituents occur in the oxidized layer, providing a barrier to translocate some reduced constituents (USEPA 2008). The value of wetlands for flood control, water storage, and water purification are estimated to be \$15,000 ha/year (Kalff 2002). Their value as for fish and wildlife habitat, recreation, or maintaining

**Figure 4.** a. Healthy Wetland. Courtesy of http://www.newbedfordguide.com/wp-content/uploads/2011/02/ wetlands1.jpg; b. Basics nutrient cycles in soil-water column of a wetland (USEPA 2008); and c. Nitrogen cycle in wet‐

accumulation and transformation of phosphorous compounds within the water column and soil. Biotic processes include assimilation by vegetation, plankton, periphyton, and microorganisms and abiotic processes include sedimentation, adsorption by soils, precipitation, and exchange processes between soil and the overlying water column (Reddy and Delaune 2008). Transformations of nitrogen, phosphorous, sulfur, iron, manganese, and carbon occur in the anaerobic environment and are mostly microbial mediated. Transportation and translocation of transformed constituents occur in the oxidized layer, providing a barrier to translocate some reduced constituents (USEPA 2008). The value of wetlands for flood control, water storage, and water purification are estimated to be \$15,000 ha/year (Kalff 2002). Their value as for fish and wildlife habitat,

, PO3-

Unfortunately, half of these wetlands are disappearing and being converted for agricultural uses such as rice monoculture and aquaculture (Kalff 2002; Figure 5). Many nations restrict development in the wetlands because of the ecological value placed on the wetlands (Boyd and Tucker 1998). Considering their significant roles in removing excess nutrients, breaking down harmful metals and toxic substances via microorganisms living in soil, preventing soil erosion controls, capturing solids in flowing waters, providing habitat for many wildlife species, many countries insist restoration of degraded wetlands or the mitigation the creation of the new ones (Mitsch and Gosselink 1993). Mitsch and Gosselink (1993) stated that natural wetlands and constructed wetlands are very effective in reducing nutrient and organic matter concentrations in wastewater. Wetlands act as biological filters by removing suspended minerals and organic matters from water. Natural and constructed wetlands can be used for treating agricultural, municipal, and industrial wastewaters (Moshiri 1995). Boyd and Tucker (1998) describe the removal processes of suspended minerals and organic matter from water by a wetland as: sedimentation of suspended particles, filtration of suspended particles by plant materials, uptake of nutrients by plants and bacteria, decomposition of organic matter, denitrification, nitrification, and adsorption of ions by the soil.

…etc.); both biotic and abiotic mechanisms regulate

Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **14**

**a**

http://dx.doi.org/10.5772/57471

17

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

**b c**

Unfortunately, half of these wetlands are disappearing and being converted for agricultural uses such as rice monoculture and aquaculture (Kalff 2002; Figure 5). Many nations restrict development in the wetlands because of the ecological value placed on the wetlands (Boyd and Tucker 1998). Considering their significant roles in removing excess nutrients, breaking down harmful metals and toxic substances via microorganisms living in soil, preventing soil erosion controls, capturing solids in flowing waters, providing habitat for many wildlife species, many countries insist restoration of degraded wetlands or the mitigation the creation of the new ones (Mitsch and Gosselink 1993). Mitsch and Gosselink (1993) stated that natural wetlands and constructed wetlands are very effective in reducing nutrient and organic matter concentrations in wastewater. Wetlands act as biological filters by removing suspended minerals and organic matters from water. Natural and constructed wetlands can be used for treating agricultural, municipal, and industrial wastewaters (Moshiri 1995). Boyd and Tucker (1998) describe the removal processes of suspended minerals and organic matter from water by a wetland as: sedimentation of suspended particles, filtration of suspended particles by

biodiversity must also be considered (Mitch and Goselink 2007).

recreation, or maintaining biodiversity must also be considered (Mitch and Goselink 2007).

Phosphorous enters wetlands in different forms (PO4-

lands (USEPA 2008).

Phosphorous enters wetlands in different forms (PO4 - , PO3 - …etc.); both biotic and abiotic mechanisms regulate accumulation and transformation of phosphorous compounds within the water column and soil. Biotic processes include assimilation by vegetation, plankton, periphyton, and microorganisms and abiotic processes include sedimentation, adsorption by soils, precipitation, and exchange processes between soil and the overlying water column (Reddy and Delaune 2008). Transformations of nitrogen, phosphorous, sulfur, iron, manga‐ nese, and carbon occur in the anaerobic environment and are mostly microbial mediated. Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **14** Impacts of Aquaculture on Habitats and Best Management Practices (BMPs) http://dx.doi.org/10.5772/57471 17

toring, separating populations by their life stages, good planning of disposal and facility rearrangement if necessary. Keeping good records of every operation in the farm (i.e. hazardous waste disposal, chemical use, water quality, fish growth and survivorship, feeding, vaccine application) is also critical in maintaining a productive and healthy facility (Yanong and

Depending on the type of aquaculture operation (ponds, raceways, cages, or recirculating systems) specific biosecurity measures and management practices should be used. Although fundamental practices are generally the same for many biosecurity plans, practices may vary depending on the species cultured, life stage of the animals, pathogen, type of operation and many others listed earlier. The most important aspect of this plan is to prevent disease outbreaks so that economic and environmental risks are reduced. A biosecurity plan, along with the facility sanitation and disinfection practices, is part of the best management practices

There are various definitions on what wetlands are and what best describes wetlands. Kalff (2002) described wetlands as the transition zones between terrestrial and aquatic systems where the soils are waterlogged for at least part of the year or covered by shallow water, and which are typically occupied by rooted aquatic vegetation (*macrophytes*); not all wetlands are physically connected to lakes or lotic systems. Occupying three times the surface area of lakes,

1999). There are tremendous benefits associated with the presence of wetlands (USEPA 2006).Figure 4a shows a healthy wetland and Figure 4b demonstrate the schematic represen‐ tation of nutrient cycling in the soil-water column of a wetland. Many biogeochemical transformations occur in wetlands and mostly anaerobic conditions exist at the soil water interface. The plants also create an aerobic zone near the roots and different oxidation reduction mechanisms occur in the soil leading to nutrient cycling (USEPA 2008). Within the aerobic zone surrounding plant roots, ammonia is oxidized to nitrate by a process called nitrification; nitrate is then readily diffused into adjacent anaerobic soil. Nitrate is reduced to molecular nitrogen through denitrification, or may be reduced to ammonium under certain conditions through the dissimilatory nitrate reduction process (Ruckauf et al. 2004; Reddy and

mechanisms regulate accumulation and transformation of phosphorous compounds within the water column and soil. Biotic processes include assimilation by vegetation, plankton, periphyton, and microorganisms and abiotic processes include sedimentation, adsorption by soils, precipitation, and exchange processes between soil and the overlying water column (Reddy and Delaune 2008). Transformations of nitrogen, phosphorous, sulfur, iron, manga‐ nese, and carbon occur in the anaerobic environment and are mostly microbial mediated.


, or 6.4%, of Earth's land area (Shine and de Klemm

…etc.); both biotic and abiotic

used in various successful modern aquaculture settings.

Delaune 2008). The nitrogen cycle is shown in Figure 4c. Phosphorous enters wetlands in different forms (PO4

wetlands cover about 8.6 million km2

**3. Methods of minimizing environmental impacts**

Erlacher-Reid 2012).

16 Sustainable Aquaculture Techniques

**3.1. Wetlands**

Phosphorous enters wetlands in different forms (PO4- , PO3- …etc.); both biotic and abiotic mechanisms regulate accumulation and transformation of phosphorous compounds within the water column and soil. Biotic processes include **Figure 4.** a. Healthy Wetland. Courtesy of http://www.newbedfordguide.com/wp-content/uploads/2011/02/ wetlands1.jpg; b. Basics nutrient cycles in soil-water column of a wetland (USEPA 2008); and c. Nitrogen cycle in wet‐ lands (USEPA 2008).

assimilation by vegetation, plankton, periphyton, and microorganisms and abiotic processes include sedimentation,

Transportation and translocation of transformed constituents occur in the oxidized layer, providing a barrier to translocate some reduced constituents (USEPA 2008). The value of wetlands for flood control, water storage, and water purification are estimated to be \$15,000 ha/year (Kalff 2002). Their value as for fish and wildlife habitat, recreation, or maintaining biodiversity must also be considered (Mitch and Goselink 2007). adsorption by soils, precipitation, and exchange processes between soil and the overlying water column (Reddy and Delaune 2008). Transformations of nitrogen, phosphorous, sulfur, iron, manganese, and carbon occur in the anaerobic environment and are mostly microbial mediated. Transportation and translocation of transformed constituents occur in the oxidized layer, providing a barrier to translocate some reduced constituents (USEPA 2008). The value of wetlands for flood control, water storage, and water purification are estimated to be \$15,000 ha/year (Kalff 2002). Their value as for fish and wildlife habitat, recreation, or maintaining biodiversity must also be considered (Mitch and Goselink 2007). Unfortunately, half of these wetlands are disappearing and being converted for agricultural uses such as rice

Unfortunately, half of these wetlands are disappearing and being converted for agricultural uses such as rice monoculture and aquaculture (Kalff 2002; Figure 5). Many nations restrict development in the wetlands because of the ecological value placed on the wetlands (Boyd and Tucker 1998). Considering their significant roles in removing excess nutrients, breaking down harmful metals and toxic substances via microorganisms living in soil, preventing soil erosion controls, capturing solids in flowing waters, providing habitat for many wildlife species, many countries insist restoration of degraded wetlands or the mitigation the creation of the new ones (Mitsch and Gosselink 1993). Mitsch and Gosselink (1993) stated that natural wetlands and constructed wetlands are very effective in reducing nutrient and organic matter concentrations in wastewater. Wetlands act as biological filters by removing suspended minerals and organic matters from water. Natural and constructed wetlands can be used for treating agricultural, municipal, and industrial wastewaters (Moshiri 1995). Boyd and Tucker (1998) describe the removal processes of suspended minerals and organic matter from water by a wetland as: sedimentation of suspended particles, filtration of suspended particles by monoculture and aquaculture (Kalff 2002; Figure 5). Many nations restrict development in the wetlands because of the ecological value placed on the wetlands (Boyd and Tucker 1998). Considering their significant roles in removing excess nutrients, breaking down harmful metals and toxic substances via microorganisms living in soil, preventing soil erosion controls, capturing solids in flowing waters, providing habitat for many wildlife species, many countries insist restoration of degraded wetlands or the mitigation the creation of the new ones (Mitsch and Gosselink 1993). Mitsch and Gosselink (1993) stated that natural wetlands and constructed wetlands are very effective in reducing nutrient and organic matter concentrations in wastewater. Wetlands act as biological filters by removing suspended minerals and organic matters from water. Natural and constructed wetlands can be used for treating agricultural, municipal, and industrial wastewaters (Moshiri 1995). Boyd and Tucker (1998) describe the removal processes of suspended minerals and organic matter from water by a wetland as: sedimentation of suspended particles, filtration of suspended particles by plant materials, uptake of nutrients by plants and bacteria, decomposition of organic matter, denitrification, nitrification, and adsorption of ions by the soil. plant materials, uptake of nutrients by plants and bacteria, decomposition of organic matter, denitrification, nitrification, and adsorption of ions by the soil. Macrophytes in wetland systems play a key role as substrate for periphyton and actively transport oxygen to the rhizosphere, which serves to facilitate chemical transformations in the sediment (Schwartz and Boyd 1995). Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **15** Macrophytes in wetland systems play a key role as substrate for periphyton and actively transport oxygen to the rhizosphere,

the last 25% of highly concentrated effluent from watershed ponds. In a study by Shpigel et al. (2013), the authors demonstrated that nitrogen, phosphorous, and total suspended solids were efficiently removed using *Salicorna* as a biofilter within a constructed wetland. In another study by Lymbery et al. (2013), wetlands removed 60-90% of total nitrogen loads and at least

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19

Some advantages of utilizing wetlands in the wastewater treatment process include the elimination of chemical treatments, an inexpensive construction process, and wetlands contribute to wildlife habitat and plant communities and to local hydrologic processes. Therefore, using natural wetlands for aquaculture should be minimized to prevent them from disappearing (Schwartz and Boyd 1995; Kalff 2002). Because of the need for large areas, concern arises over the feasibility of using wetlands for treating aquaculture effluents (Schwartz and Boyd 1995; Boyd and Tucker 1998). Integration with pond effluent management procedures might reduce the area of wetland needed for treating fish farm effluents (Schwartz and Boyd 1995). One of best management options allows for the maximization of fish production while maintaining a good pond environment with minimal impacts on the adjacent coastal system including maintaining good stocking densities to improve food assimilation efficiency in a

Settling basins can be built to remove turbidity and suspended solids from pond water supplies. Sediment ponds should be fairly deep to minimize land requirements and to provide hydraulic residence time. In general, a hydraulic residence time of at least 6-8 h is necessary but 2-3 days of retention is preferred (Boyd 1995b). Preliminary sedimentation studies on catfish pond effluents suggested that settleable solids and total phosphorus could be removed as effectively in settling basins as in wetlands (Seok et al. 1995; Boyd et al. 1998). Sedimentation can reduce biochemical oxygen demand by 40 to 50% (Boyd et al. 1998). Schwartz and Boyd (1994a) obtained information on the quality of effluent released from channel catfish ponds during pond draining and fish harvest in watershed ponds. The concentrations of total nitrogen, ammonia nitrogen, soluble reactive phosphorus, total phosphorus, and biochemical oxygen demand started increasing as early as the seining phase (Boyd et al. 2000). Schwartz and Boyd (1994a) suggested that the best way to minimize the pollution potential of aquacul‐ ture pond effluents is to harvest ponds as quickly as possible and not to discharge water during seining or to discharge fairly contaminated water into a settling basin or retention pond (Figure 6). Cathcart et al. (1999) suggested that harvesting catfish during late summer/ early fall can significantly decrease effluent discharge from the production ponds due to low water level. This may apply to other species cultured in the ponds such as shrimp and tilapia; however this practice may not be the right fit for other culture systems. Boyd and Musig (1992) found that settleable solids were seldom present in measurable quantities in effluents discharged at

The maximum instantaneous settleable solids rate allowed by the EPA (1979) is 1 ml/L for 30 day average and 2ml/L for daily maximum (USEPA NPDES 2010). Boyd and Tucker (1998) found that the effluents from catfish ponds might contain settleable matter higher than the

85% of total phosphorus, and orthophosphate loads from the aquaculture effluent.

biogeochemical energy model (Serpa et al. 2013).

**3.2. Settling basins and retention ponds**

shrimp harvest, as seines are not used.

which serves to facilitate chemical transformations in the sediment (Schwartz and Boyd 1995).

 Schwartz and Boyd (1995) passed pond effluent through constructed wetlands which drastically reduced concentrations of potential pollutants in channel catfish effluents. Concentrations of total settleable solids, total suspended **Figure 5.** a. Degraded mangroves in Vietnam, courtesy © EJF/Thornton; and b. Shrimp Farm in South America courte‐ sy WWF (http://www.worldwildlife.org/cci/aquaculture\_photos.cfm)

solids, and total phosphorus were reduced 50% or more by the constructed wetlands except for total ammonia nitrogen due to low hydraulic residence time (HRT) of the wetlands in their study. The greatest removal of total phosphorus (TP), 84% and nitrate-nitrogen (NO3-N), 75% were obtained in wetlands with a four-day HRT (Schwartz and Boyd 1995). Passing water through wetlands was more effective in removing pollutants than simply holding water in the ponds in their study. There are two basic types of ponds used to raise channel catfish; levee ponds and watershed ponds (Boyd 1985). Levee ponds discharge little water following rains because of their limited watershed area. However, watershed ponds discharge larger water volume following heavy rains due to their larger watershed areas (Schwartz and Boyd 1994a). Most channel catfish farming is conducted in levee ponds where ponds consist of the inside slopes and tops of levees, resulting in high seepage rates especially from rain during the winter. Watershed ponds are usually located much farther apart than levee ponds, so it is typically not feasible to transfer water between ponds for reuse. Boyd and Tucker (1998) suggested that large wetlands could be used to treat effluent when ponds are drained. A smaller wetland could be used for treating the last 25% of Schwartz and Boyd (1995) passed pond effluent through constructed wetlands which drasti‐ cally reduced concentrations of potential pollutants in channel catfish effluents. Concentra‐ tions of total settleable solids, total suspended solids, and total phosphorus were reduced 50% or more by the constructed wetlands except for total ammonia nitrogen due to low hydraulic residence time (HRT) of the wetlands in their study. The greatest removal of total phosphorus (TP), 84% and nitrate-nitrogen (NO3-N), 75% were obtained in wetlands with a four-day HRT (Schwartz and Boyd 1995). Passing water through wetlands was more effective in removing pollutants than simply holding water in the ponds in their study.

highly concentrated effluent from watershed ponds. In a study by Shpigel et al. (2013), the authors demonstrated that nitrogen, phosphorous, and total suspended solids were efficiently removed using *Salicorna* as a biofilter within a constructed wetland. In another study by Lymbery et al. (2013), wetlands removed 60-90% of total nitrogen loads and at least 85% of total phosphorus, and orthophosphate loads from the aquaculture effluent. Some advantages of utilizing wetlands in the wastewater treatment process include the elimination of chemical treatments, an inexpensive construction process, and wetlands contribute to wildlife habitat and plant communities and to local hydrologic processes. Therefore, using natural wetlands for aquaculture should be minimized to prevent them from disappearing (Schwartz and Boyd 1995; Kalff 2002). Because of the need for large areas, concern arises over the feasibility of using wetlands for treating aquaculture effluents (Schwartz and Boyd 1995; Boyd and Tucker 1998). Integration with pond effluent management procedures might reduce the area of wetland needed for treating fish farm effluents (Schwartz and Boyd 1995). One of best management options allows for the maximization of fish production while maintaining a good pond environment with minimal impacts on the adjacent coastal system including maintaining good stocking densities to improve There are two basic types of ponds used to raise channel catfish; levee ponds and watershed ponds (Boyd 1985). Levee ponds discharge little water following rains because of their limited watershed area. However, watershed ponds discharge larger water volume following heavy rains due to their larger watershed areas (Schwartz and Boyd 1994a). Most channel catfish farming is conducted in levee ponds where ponds consist of the inside slopes and tops of levees, resulting in high seepage rates especially from rain during the winter. Watershed ponds are usually located much farther apart than levee ponds, so it is typically not feasible to transfer water between ponds for reuse. Boyd and Tucker (1998) suggested that large wetlands could be used to treat effluent when ponds are drained. A smaller wetland could be used for treating

food assimilation efficiency in a biogeochemical energy model (Serpa et al. 2013).

the last 25% of highly concentrated effluent from watershed ponds. In a study by Shpigel et al. (2013), the authors demonstrated that nitrogen, phosphorous, and total suspended solids were efficiently removed using *Salicorna* as a biofilter within a constructed wetland. In another study by Lymbery et al. (2013), wetlands removed 60-90% of total nitrogen loads and at least 85% of total phosphorus, and orthophosphate loads from the aquaculture effluent.

Some advantages of utilizing wetlands in the wastewater treatment process include the elimination of chemical treatments, an inexpensive construction process, and wetlands contribute to wildlife habitat and plant communities and to local hydrologic processes. Therefore, using natural wetlands for aquaculture should be minimized to prevent them from disappearing (Schwartz and Boyd 1995; Kalff 2002). Because of the need for large areas, concern arises over the feasibility of using wetlands for treating aquaculture effluents (Schwartz and Boyd 1995; Boyd and Tucker 1998). Integration with pond effluent management procedures might reduce the area of wetland needed for treating fish farm effluents (Schwartz and Boyd 1995). One of best management options allows for the maximization of fish production while maintaining a good pond environment with minimal impacts on the adjacent coastal system including maintaining good stocking densities to improve food assimilation efficiency in a biogeochemical energy model (Serpa et al. 2013).

#### **3.2. Settling basins and retention ponds**

plant materials, uptake of nutrients by plants and bacteria, decomposition of organic matter, denitrification, nitrification, and adsorption of ions by the soil. Macrophytes in wetland systems play a key role as substrate for periphyton and actively transport oxygen to the rhizosphere, which serves to facilitate chemical transformations in the sediment (Schwartz and

which serves to facilitate chemical transformations in the sediment (Schwartz and Boyd 1995).

**a**

Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **15**

**b**

 Schwartz and Boyd (1995) passed pond effluent through constructed wetlands which drastically reduced concentrations of potential pollutants in channel catfish effluents. Concentrations of total settleable solids, total suspended solids, and total phosphorus were reduced 50% or more by the constructed wetlands except for total ammonia nitrogen due to low hydraulic residence time (HRT) of the wetlands in their study. The greatest removal of total phosphorus (TP), 84% and nitrate-nitrogen (NO3-N), 75% were obtained in wetlands with a four-day HRT (Schwartz and Boyd 1995). Passing water

 There are two basic types of ponds used to raise channel catfish; levee ponds and watershed ponds (Boyd 1985). Levee ponds discharge little water following rains because of their limited watershed area. However, watershed ponds discharge larger water volume following heavy rains due to their larger watershed areas (Schwartz and Boyd 1994a). Most channel catfish farming is conducted in levee ponds where ponds consist of the inside slopes and tops of levees, resulting in high seepage rates especially from rain during the winter. Watershed ponds are usually located much farther apart than levee ponds, so it is typically not feasible to transfer water between ponds for reuse. Boyd and Tucker (1998) suggested that large wetlands could be used to treat effluent when ponds are drained. A smaller wetland could be used for treating the last 25% of highly concentrated effluent from watershed ponds. In a study by Shpigel et al. (2013), the authors demonstrated that nitrogen, phosphorous, and total suspended solids were efficiently removed using *Salicorna* as a biofilter within a constructed wetland. In another study by Lymbery et al. (2013), wetlands removed 60-90% of total nitrogen loads and at least 85% of total

 Some advantages of utilizing wetlands in the wastewater treatment process include the elimination of chemical treatments, an inexpensive construction process, and wetlands contribute to wildlife habitat and plant communities and to local hydrologic processes. Therefore, using natural wetlands for aquaculture should be minimized to prevent them from disappearing (Schwartz and Boyd 1995; Kalff 2002). Because of the need for large areas, concern arises over the feasibility of using wetlands for treating aquaculture effluents (Schwartz and Boyd 1995; Boyd and Tucker 1998). Integration with pond effluent management procedures might reduce the area of wetland needed for treating fish farm effluents (Schwartz and Boyd 1995). One of best management options allows for the maximization of fish production while maintaining a good pond environment with minimal impacts on the adjacent coastal system including maintaining good stocking densities to improve

through wetlands was more effective in removing pollutants than simply holding water in the ponds in their study.

There are two basic types of ponds used to raise channel catfish; levee ponds and watershed ponds (Boyd 1985). Levee ponds discharge little water following rains because of their limited watershed area. However, watershed ponds discharge larger water volume following heavy rains due to their larger watershed areas (Schwartz and Boyd 1994a). Most channel catfish farming is conducted in levee ponds where ponds consist of the inside slopes and tops of levees, resulting in high seepage rates especially from rain during the winter. Watershed ponds are usually located much farther apart than levee ponds, so it is typically not feasible to transfer water between ponds for reuse. Boyd and Tucker (1998) suggested that large wetlands could be used to treat effluent when ponds are drained. A smaller wetland could be used for treating

**Figure 5.** a. Degraded mangroves in Vietnam, courtesy © EJF/Thornton; and b. Shrimp Farm in South America courte‐

Schwartz and Boyd (1995) passed pond effluent through constructed wetlands which drasti‐ cally reduced concentrations of potential pollutants in channel catfish effluents. Concentra‐ tions of total settleable solids, total suspended solids, and total phosphorus were reduced 50% or more by the constructed wetlands except for total ammonia nitrogen due to low hydraulic residence time (HRT) of the wetlands in their study. The greatest removal of total phosphorus (TP), 84% and nitrate-nitrogen (NO3-N), 75% were obtained in wetlands with a four-day HRT (Schwartz and Boyd 1995). Passing water through wetlands was more effective in removing

phosphorus, and orthophosphate loads from the aquaculture effluent.

pollutants than simply holding water in the ponds in their study.

sy WWF (http://www.worldwildlife.org/cci/aquaculture\_photos.cfm)

food assimilation efficiency in a biogeochemical energy model (Serpa et al. 2013).

Macrophytes in wetland systems play a key role as substrate for periphyton and actively transport oxygen to the rhizosphere,

Boyd 1995).

18 Sustainable Aquaculture Techniques

Settling basins can be built to remove turbidity and suspended solids from pond water supplies. Sediment ponds should be fairly deep to minimize land requirements and to provide hydraulic residence time. In general, a hydraulic residence time of at least 6-8 h is necessary but 2-3 days of retention is preferred (Boyd 1995b). Preliminary sedimentation studies on catfish pond effluents suggested that settleable solids and total phosphorus could be removed as effectively in settling basins as in wetlands (Seok et al. 1995; Boyd et al. 1998). Sedimentation can reduce biochemical oxygen demand by 40 to 50% (Boyd et al. 1998). Schwartz and Boyd (1994a) obtained information on the quality of effluent released from channel catfish ponds during pond draining and fish harvest in watershed ponds. The concentrations of total nitrogen, ammonia nitrogen, soluble reactive phosphorus, total phosphorus, and biochemical oxygen demand started increasing as early as the seining phase (Boyd et al. 2000). Schwartz and Boyd (1994a) suggested that the best way to minimize the pollution potential of aquacul‐ ture pond effluents is to harvest ponds as quickly as possible and not to discharge water during seining or to discharge fairly contaminated water into a settling basin or retention pond (Figure 6). Cathcart et al. (1999) suggested that harvesting catfish during late summer/ early fall can significantly decrease effluent discharge from the production ponds due to low water level. This may apply to other species cultured in the ponds such as shrimp and tilapia; however this practice may not be the right fit for other culture systems. Boyd and Musig (1992) found that settleable solids were seldom present in measurable quantities in effluents discharged at shrimp harvest, as seines are not used.

The maximum instantaneous settleable solids rate allowed by the EPA (1979) is 1 ml/L for 30 day average and 2ml/L for daily maximum (USEPA NPDES 2010). Boyd and Tucker (1998) found that the effluents from catfish ponds might contain settleable matter higher than the

partial or complete draining would need to be around 10 to 20% of the volume of the largest

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

21

Among the frequently applied practices for treating pond effluents such as coagulant appli‐ cation, water exchanges, and settling basins, many farmers advocate settling ponds for effluents. Even though settling has certain benefits in removing solids stirred into water during catfish harvesting, at other times, nutrients and organic matter in effluents are likely to be phytoplankton or dissolved substances, which do not settle easily (Boyd 2000). Schwartz and Boyd (1996) suggested that after seining, the last 25% of effluent water can be held in the pond for two to three days (depending on the farm operation and timing) to allow solids to settle before they are drained completely. This reduced the discharge of settleable solids by 96%, total nitrogen by 74%, and total phosphorus by 69% and organic matter by 59%. This level reduction is very effective but may not be feasible considering limited space availability in most aquaculture farms. Settling basins are not recommended to treat storm runoff of water‐ shed type ponds because of the large volume of pond water required to reach desirable effluent qualification with a retention time of 8 hours (Hargreaves et al. 2003). Lutz et al. (2011) suggest additional buffer strips to allow plants to pick up excess nutrients and allow water to further slow down before it reaches any downstream creeks. Table 2 provides application discharge data on the wastewater treatment plant and recommended maximum daily loads on water quality parameters as main concerns to EPA (USEPA NPDES 2010). Depending on the type of operation and inflow or existing water conditions, outflow water quality parameters are recommended not to exceed the concentrations provided in the table 2 for NPDES Permit.

pond on the farm (Boyd 2000).

**Table 2.** Application discharge data (EPA NPDES 2010).

**Figure 6.** a. Settling basin. Picture courtesy of Auburn University; b. Constructed wetlands in Mississippi (Tucker 2009) (BMP No. 6 2002).

allowable limit, and have a moderate oxygen demand at harvest. Boyd et al. (1998) demon‐ strated that a settling time of 8 hours sufficiently reduce total suspended solids and total phosphorus by 75%, and turbidity and 5-day Biochemical Oxygen Demand (BOD5) by more than 40% in catfish pond effluents. Teichert-Coddington et al. (1999) studied the final effluent from draining shrimp ponds to settling ponds, and obtained near maximum sedimentation of most variables within 6 hours residence, with a removal of 88% of total suspended solids, 100% of settleable solids, 63% of BOD5 and 55% of total phosphorus.

Using separate settling ponds to treat aquaculture effluent can be a problem on commercial fish farms because of the land requirements and construction costs. Production ponds can be utilized as settling ponds, but this would result in a loss of production capacity. Seok et al. (1995) suggested holding the last fraction of pond water for several days in production ponds before discharging it to the environment as a practical way to allay effluent impact.

The characteristics of solids in pond effluents have been studied to provide information for designing and operating pilot sedimentation basins to test their efficiency for treating pond effluents (Ozbay and Boyd 2004; Ozbay and Boyd 2003a; Ozbay and Boyd 2003b; Boyd 1999). Recommendation is made to lower water 25% of its full volume and settle pond effluents for minimum of 2 to 4 hours and more if necessary to remove over 90% of settleable matters, 75% of total suspended solids and over 50% phosphorus loads in the nearby pond used as a settling basin. Cathcart et al. (1999) studied the reduction of effluent discharge and groundwater use in catfish ponds in Mississippi. Deepening the settling ponds receiving overflows from adjacent production ponds reduced the effluent discharges of ponds by 40 – 90%. Hargreaves et al. (2003) summarized in a SRAC Report that over 50% of total suspended solids, total nitrogen, total phosphorus, and biochemical oxygen demand are related to particles less than 5 micrometers in diameter. Boyd (2000) suggested from the estimate of runoff from watershed studies that settling basins used to treat storm runoff from typical watershed type catfish ponds would need to have volumes of 30 to 40% of pond volume in order to provide a retention time of 8 hours. Thus, because of the large volume required, settling basins do not appear to be a feasible solution for treating storm runoff. Settling basins for treating intentional discharge for partial or complete draining would need to be around 10 to 20% of the volume of the largest pond on the farm (Boyd 2000).

Among the frequently applied practices for treating pond effluents such as coagulant appli‐ cation, water exchanges, and settling basins, many farmers advocate settling ponds for effluents. Even though settling has certain benefits in removing solids stirred into water during catfish harvesting, at other times, nutrients and organic matter in effluents are likely to be phytoplankton or dissolved substances, which do not settle easily (Boyd 2000). Schwartz and Boyd (1996) suggested that after seining, the last 25% of effluent water can be held in the pond for two to three days (depending on the farm operation and timing) to allow solids to settle before they are drained completely. This reduced the discharge of settleable solids by 96%, total nitrogen by 74%, and total phosphorus by 69% and organic matter by 59%. This level reduction is very effective but may not be feasible considering limited space availability in most aquaculture farms. Settling basins are not recommended to treat storm runoff of water‐ shed type ponds because of the large volume of pond water required to reach desirable effluent qualification with a retention time of 8 hours (Hargreaves et al. 2003). Lutz et al. (2011) suggest additional buffer strips to allow plants to pick up excess nutrients and allow water to further slow down before it reaches any downstream creeks. Table 2 provides application discharge data on the wastewater treatment plant and recommended maximum daily loads on water quality parameters as main concerns to EPA (USEPA NPDES 2010). Depending on the type of operation and inflow or existing water conditions, outflow water quality parameters are recommended not to exceed the concentrations provided in the table 2 for NPDES Permit.


**Table 2.** Application discharge data (EPA NPDES 2010).

allowable limit, and have a moderate oxygen demand at harvest. Boyd et al. (1998) demon‐ strated that a settling time of 8 hours sufficiently reduce total suspended solids and total phosphorus by 75%, and turbidity and 5-day Biochemical Oxygen Demand (BOD5) by more than 40% in catfish pond effluents. Teichert-Coddington et al. (1999) studied the final effluent from draining shrimp ponds to settling ponds, and obtained near maximum sedimentation of most variables within 6 hours residence, with a removal of 88% of total suspended solids, 100%

**Figure 6.** a. Settling basin. Picture courtesy of Auburn University; b. Constructed wetlands in Mississippi (Tucker 2009)

Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **14**

**<sup>a</sup> <sup>b</sup>**

Using separate settling ponds to treat aquaculture effluent can be a problem on commercial fish farms because of the land requirements and construction costs. Production ponds can be utilized as settling ponds, but this would result in a loss of production capacity. Seok et al. (1995) suggested holding the last fraction of pond water for several days in production ponds

The characteristics of solids in pond effluents have been studied to provide information for designing and operating pilot sedimentation basins to test their efficiency for treating pond effluents (Ozbay and Boyd 2004; Ozbay and Boyd 2003a; Ozbay and Boyd 2003b; Boyd 1999). Recommendation is made to lower water 25% of its full volume and settle pond effluents for minimum of 2 to 4 hours and more if necessary to remove over 90% of settleable matters, 75% of total suspended solids and over 50% phosphorus loads in the nearby pond used as a settling basin. Cathcart et al. (1999) studied the reduction of effluent discharge and groundwater use in catfish ponds in Mississippi. Deepening the settling ponds receiving overflows from adjacent production ponds reduced the effluent discharges of ponds by 40 – 90%. Hargreaves et al. (2003) summarized in a SRAC Report that over 50% of total suspended solids, total nitrogen, total phosphorus, and biochemical oxygen demand are related to particles less than 5 micrometers in diameter. Boyd (2000) suggested from the estimate of runoff from watershed studies that settling basins used to treat storm runoff from typical watershed type catfish ponds would need to have volumes of 30 to 40% of pond volume in order to provide a retention time of 8 hours. Thus, because of the large volume required, settling basins do not appear to be a feasible solution for treating storm runoff. Settling basins for treating intentional discharge for

before discharging it to the environment as a practical way to allay effluent impact.

of settleable solids, 63% of BOD5 and 55% of total phosphorus.

(BMP No. 6 2002).

20 Sustainable Aquaculture Techniques

According to Tucker and Hargreaves (2008), uneaten feed and fecal wastes are the primary producer of solids that potentially degrade environmental conditions at a farm. Solid accu‐ mulation can deteriorate the conditions in a facility and create a threat to the aquatic species cultured. Solids can damage fish gills or block shellfish from filtering and increase dissolved oxygen demand due to increased microbial activity in the accumulated organic materials (Tucker and Hargreaves 2008). Excess phosphorus and nitrogen in the sediment with high solids accumulation has a drastic effect in receiving water bodies causing eutrophic conditions (Tucker and Hargreaves 2009). As the most frequently applied tool for solids removal of pond effluents, settling basins or retention ponds are used to mitigate aquaculture effluent or overflows (depending on size and availability) where the water from ponds or other types of aquaculture facilities are treated by the natural processes to minimize or eliminate pollutants (Setty 2013). Particles settle if given enough time by gravity and microbial community which break down excess nutrients and other pollutants into a less harmful or harmless form (Setty 2013). Coupled with other practices suggested for the best management practices, settling basins and retention ponds remove a significant portion of contaminants and excess nutrients as we discussed in this section and have been recommended for pond aquaculture facilities (Boyd and Tucker 1995).

membranes used to filter the solids out of suspension in aquaculture waters. Suitable treatment techniques should separate particles from the primary effluent flow. Cripps (1995) indicated that by using filters with pore sizes ranging between 200 – 5 μm, increased treatment effects were achieved through sequential decrease in pore size, which removed more nutrients. It is important for a treatment process to remove relatively larger parti‐

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

23

Cripps (1995) found lower concentration of TN than TP after filtration, and an increase in the filtration effort reduced both nutrients. Most of the plankton/ solids of eutrophic pond waters, with over 50% of the TSS, are found in particles smaller than 10 μm. Ozbay and Boyd (2003a) found that removing particles down to a very small size provided the required benefits targeted for the pond effluents. They recorded percentage removal of total phosphorus (TP), total nitrogen (TN), 5-day biochemical oxygen demand (BOD5), and particulate organic matters (POM) associated with total suspended particles (TSS) remov‐ al using filters of different pore sizes (41, 30, 20, 10, 8 and 5μm). Most water quality parameters except total nitrogen were substantially reduced except nitrogen after the effluent water was passed through the filter with 41μm pore size. Further removal was achieved with the consecutive filtration using filters with smaller pore sizes. They only monitored a noticeable reduction of total nitrogen with successively finer filter sizes.

Time required to remove different size particles was also studied by Ozbay and Boyd (2003a) and they suggested a settling time of 24 hours to remove about 30% of TSS and TP and 35% of POM, 25% BOD5 and 20% of TN. Considering the length of time, they do not recommend using settling basins for treating storm overflow and pond draining effluent. In their later study, Ozbay and Boyd (2003b) used turbidity and found it was strongly correlated with total suspended solids and inorganic suspended solids. The relationship was stronger between total suspended solids and inorganic suspended solids as compared to total suspended solids and particulate suspended solids due to the fact that fluctuations in phytoplankton concentration

 22.5 28.8 21.5 12.9 22.9 28.0 30.7 27.2 14.0 24.3 32.0 34.9 28.7 17.8 25.4 34.5 35.4 31.0 18.5 28.1 38.7 40.1 36.0 22.4 33.8 47.9 51.6 37.9 23.5 34.0

**Table 3.** Percentage of total suspended particles removed by filters of different pore sizes (41, 30, 20, 10, 8 and 5µm). Percentages of total phosphorus, total nitrogen, 5-day biochemical oxygen demand, and particulate organic matters

**Average Percentage Removal (cumulative) TSS POM TP TN BOD5**

cles, resulting in a reduction in nutrient loading of the effluent.

over time changes particulate organic matter concentration.

are removed with the removal of total suspended solids (Ozbay and Boyd 2003a).

**Filter Pore Size (µm)**

#### **3.3. Physical amendments**

Sedimentation and filtration are two of the most commonly used particle removal techniques in aquaculture. The applications of this technology have become priceless because untreated effluents or discharges may pose a threat to the environment by carrying various materials in excess quantities including soils, nutrients, and minerals (Ozbay 2002). According to Ebeling and Vinci (2013), total suspended solids (TSS), settleable solids, 5-day biochemical oxygen demand (BOD5), and total phosphorus (TP) are the four major pollutants found in aquaculture effluents/discharge. These pollutants are regulated to ensure that their concentrations can be minimized through the removal of solids containing feces and uneaten feed.

It is important that pollutant concentrations associated with specific particle size ranges in the effluents are considered during the physical removal stage and knowledge on the characteristics of these particles make the removal process more successful (Ozbay and Boyd 2003a). Water quality requirements are frequently discussed but physical characteris‐ tics and particle size distribution of the pollutants in the water are not known well. Analytical technology including size fractionation using sieves, laser diffraction, size fractionation using membranes, and characterization using the Coulter registered method have all improved and have been applied in different industries depending on the effluent and discharge characteristics of the particles in question (Cripps 1993). Boyd (2000) reported that about 40% of total suspended solids (TSS), total phosphorus (TP), total nitrogen (TN), and biochemical oxygen demand were associated with particles 51 μm or larger in sizes in catfish ponds. Table 3 shows differences in concentrations of water quality parameters of the pond effluents before and after filtration (Ozbay and Boyd 2003a).Cripps (1995) found that aquaculture wastewaters typically have low TSS concentrations, compared to various industrial and municipal wastewaters, and numerous small particles which clog the 45 μm

membranes used to filter the solids out of suspension in aquaculture waters. Suitable treatment techniques should separate particles from the primary effluent flow. Cripps (1995) indicated that by using filters with pore sizes ranging between 200 – 5 μm, increased treatment effects were achieved through sequential decrease in pore size, which removed more nutrients. It is important for a treatment process to remove relatively larger parti‐ cles, resulting in a reduction in nutrient loading of the effluent.

According to Tucker and Hargreaves (2008), uneaten feed and fecal wastes are the primary producer of solids that potentially degrade environmental conditions at a farm. Solid accu‐ mulation can deteriorate the conditions in a facility and create a threat to the aquatic species cultured. Solids can damage fish gills or block shellfish from filtering and increase dissolved oxygen demand due to increased microbial activity in the accumulated organic materials (Tucker and Hargreaves 2008). Excess phosphorus and nitrogen in the sediment with high solids accumulation has a drastic effect in receiving water bodies causing eutrophic conditions (Tucker and Hargreaves 2009). As the most frequently applied tool for solids removal of pond effluents, settling basins or retention ponds are used to mitigate aquaculture effluent or overflows (depending on size and availability) where the water from ponds or other types of aquaculture facilities are treated by the natural processes to minimize or eliminate pollutants (Setty 2013). Particles settle if given enough time by gravity and microbial community which break down excess nutrients and other pollutants into a less harmful or harmless form (Setty 2013). Coupled with other practices suggested for the best management practices, settling basins and retention ponds remove a significant portion of contaminants and excess nutrients as we discussed in this section and have been recommended for pond aquaculture facilities

Sedimentation and filtration are two of the most commonly used particle removal techniques in aquaculture. The applications of this technology have become priceless because untreated effluents or discharges may pose a threat to the environment by carrying various materials in excess quantities including soils, nutrients, and minerals (Ozbay 2002). According to Ebeling and Vinci (2013), total suspended solids (TSS), settleable solids, 5-day biochemical oxygen demand (BOD5), and total phosphorus (TP) are the four major pollutants found in aquaculture effluents/discharge. These pollutants are regulated to ensure that their concentrations can be

It is important that pollutant concentrations associated with specific particle size ranges in the effluents are considered during the physical removal stage and knowledge on the characteristics of these particles make the removal process more successful (Ozbay and Boyd 2003a). Water quality requirements are frequently discussed but physical characteris‐ tics and particle size distribution of the pollutants in the water are not known well. Analytical technology including size fractionation using sieves, laser diffraction, size fractionation using membranes, and characterization using the Coulter registered method have all improved and have been applied in different industries depending on the effluent and discharge characteristics of the particles in question (Cripps 1993). Boyd (2000) reported that about 40% of total suspended solids (TSS), total phosphorus (TP), total nitrogen (TN), and biochemical oxygen demand were associated with particles 51 μm or larger in sizes in catfish ponds. Table 3 shows differences in concentrations of water quality parameters of the pond effluents before and after filtration (Ozbay and Boyd 2003a).Cripps (1995) found that aquaculture wastewaters typically have low TSS concentrations, compared to various industrial and municipal wastewaters, and numerous small particles which clog the 45 μm

minimized through the removal of solids containing feces and uneaten feed.

(Boyd and Tucker 1995).

22 Sustainable Aquaculture Techniques

**3.3. Physical amendments**

Cripps (1995) found lower concentration of TN than TP after filtration, and an increase in the filtration effort reduced both nutrients. Most of the plankton/ solids of eutrophic pond waters, with over 50% of the TSS, are found in particles smaller than 10 μm. Ozbay and Boyd (2003a) found that removing particles down to a very small size provided the required benefits targeted for the pond effluents. They recorded percentage removal of total phosphorus (TP), total nitrogen (TN), 5-day biochemical oxygen demand (BOD5), and particulate organic matters (POM) associated with total suspended particles (TSS) remov‐ al using filters of different pore sizes (41, 30, 20, 10, 8 and 5μm). Most water quality parameters except total nitrogen were substantially reduced except nitrogen after the effluent water was passed through the filter with 41μm pore size. Further removal was achieved with the consecutive filtration using filters with smaller pore sizes. They only monitored a noticeable reduction of total nitrogen with successively finer filter sizes.

Time required to remove different size particles was also studied by Ozbay and Boyd (2003a) and they suggested a settling time of 24 hours to remove about 30% of TSS and TP and 35% of POM, 25% BOD5 and 20% of TN. Considering the length of time, they do not recommend using settling basins for treating storm overflow and pond draining effluent. In their later study, Ozbay and Boyd (2003b) used turbidity and found it was strongly correlated with total suspended solids and inorganic suspended solids. The relationship was stronger between total suspended solids and inorganic suspended solids as compared to total suspended solids and particulate suspended solids due to the fact that fluctuations in phytoplankton concentration over time changes particulate organic matter concentration.


**Table 3.** Percentage of total suspended particles removed by filters of different pore sizes (41, 30, 20, 10, 8 and 5µm). Percentages of total phosphorus, total nitrogen, 5-day biochemical oxygen demand, and particulate organic matters are removed with the removal of total suspended solids (Ozbay and Boyd 2003a).

Ackefors and Enell (1994) found the majority of the phosphorus from fish farms is bound to the particles while nitrogen is not bound to the particles but more in a dissolved form in water. Similar to the phosphorus most of the biodegradable organic matter producing biochemical oxygen demand was in the particles in their study. Cripps (1992) studied the distribution of total phosphorus and total nitrogen in six serially filtered aquaculture effluent samples. Only the fraction containing particles smaller than 5 μm pore size added a disproportionately high nutrient load to the effluent in his study. Reduction rates of 60% for total phosphorus and 34% for total nitrogen were achieved using 5 μm pore size filter. Total nitrogen concentrations were greater in smaller particles than the large particles in his study. However, Cripps (1992) found 69% of the total phosphorus was associated with particles larger than 45 μm diameter. In the effluent the majority of suspended particles produced by the farms were within the size range of 4 – 120 μm diameters. Depending on the particle characteristics and farm effluent, excess nutrient removal can be achieved using the correct diameter in filtration. Cripps (1995) summarized the distribution of the particles for each successive size group and found phosphorus levels depend on the particle size distribution in the pond effluent. Removal of the relatively larger particles separated by the filters had little effect on the size distribution; hence changes in mean diameter were small but the effects were consequential. The phospho‐ rus content in both suspended solids and particles increased significantly with decreased particle sizes (Cripps 1995). Bergheim et al. (1991) used screens with 200 μm or less pore sizes to remove particles. He found further reduction of phosphorus by using the screen with the filter pore size smaller than 5 μm produced negligible results, and in practice he found it difficult to implement. However, the phosphorus content of smaller particles (based on the total phosphorus concentration of water before the effluent was filtered) was significantly greater than larger particles. This difference may appear small but actually represents a large difference in filtration effort (5-200 μm pore size).

**3.4. Chemical amendments**

from water (Boyd and Tucker 1998).

of Ozbay).

The smaller particles of colloidal clay settle slowly and they may impart unwanted turbidity to pond water (Boyd 1998). Some of the chemicals applied to aquaculture ponds to remove this undesired turbidity in pond waters include coagulants like alum (aluminum sulfate), ferric chloride, gypsum, lime and polymers. Although using organic matter to reduce turbidity has advantages from an environmental standpoint, this is difficult to obtain and apply to ponds (Boyd 1990). Coagulants are most often added to alter the physical state of dissolved and suspended solids, thereby facilitating their removal by filtration and sedimentation (Boyd and Tucker 1998; Pepper et al. 1996) (Figure 7). Coagulants destabilize colloids, thereby permitting suspended particles to form aggregates that can settle out of solution. Coagulation with alum, limestone or polyelectrolytes is very effective in removing suspended matter and phosphorus

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25

**Figure 7.** Application of the chemical amendment, lime, to an aquaculture pond in Auburn, Alabama (Photo courtesy

Boyd (1995) demonstrated that phosphorus precipitates from pond water as insoluble iron, aluminum, or calcium phosphates. Alum and ferric chloride are commercially available sources of aluminum and iron. Aluminum, calcium or iron based coagulants added to poultry litter reduced soluble phosphorus concentrations (Moore and Miller 1994). Gypsum (calcium sulfate) is a source of calcium, however, it is only suggested for use in low alkalinity waters (Boyd 1990). Boyd (1990) observed that alum treatment caused almost immediate flocculation

Particle size analysis, if used in conjunction with other techniques such as fractionation and nutrient analyses, can be used for the characterization of aquaculture wastes and for moni‐ toring the improvement in wastewater treatment efficiency (Cripps 1994). Membranes can be used for fractionation; however these techniques on their own are limited in practical appli‐ cation. But when combined with other forms of analyses, such as nutrient concentration studies in a known volume of water, the determination of proper treatment techniques is simplified (Cripps 1996).

Although we provided a detailed overview on the feasibility of using filters with various pore sizes, specifically the effectiveness of filters with 5 μm or smaller pore sizes, for the purpose of removing phosphorus and nitrogen, sedimentation is probably the most practical applica‐ tion to remove the large particles in the effluent before further filtration is applied to remove the particles bound to smaller particles which cannot be effectively removed via sedimentation. Sedimentation is discussed in detail in the settling basin section of this chapter. Commonly, screens are placed in front of pond discharge areas to prevent fish, leaves, twigs, or other large debris from escaping in the pond effluent.

#### **3.4. Chemical amendments**

Ackefors and Enell (1994) found the majority of the phosphorus from fish farms is bound to the particles while nitrogen is not bound to the particles but more in a dissolved form in water. Similar to the phosphorus most of the biodegradable organic matter producing biochemical oxygen demand was in the particles in their study. Cripps (1992) studied the distribution of total phosphorus and total nitrogen in six serially filtered aquaculture effluent samples. Only the fraction containing particles smaller than 5 μm pore size added a disproportionately high nutrient load to the effluent in his study. Reduction rates of 60% for total phosphorus and 34% for total nitrogen were achieved using 5 μm pore size filter. Total nitrogen concentrations were greater in smaller particles than the large particles in his study. However, Cripps (1992) found 69% of the total phosphorus was associated with particles larger than 45 μm diameter. In the effluent the majority of suspended particles produced by the farms were within the size range of 4 – 120 μm diameters. Depending on the particle characteristics and farm effluent, excess nutrient removal can be achieved using the correct diameter in filtration. Cripps (1995) summarized the distribution of the particles for each successive size group and found phosphorus levels depend on the particle size distribution in the pond effluent. Removal of the relatively larger particles separated by the filters had little effect on the size distribution; hence changes in mean diameter were small but the effects were consequential. The phospho‐ rus content in both suspended solids and particles increased significantly with decreased particle sizes (Cripps 1995). Bergheim et al. (1991) used screens with 200 μm or less pore sizes to remove particles. He found further reduction of phosphorus by using the screen with the filter pore size smaller than 5 μm produced negligible results, and in practice he found it difficult to implement. However, the phosphorus content of smaller particles (based on the total phosphorus concentration of water before the effluent was filtered) was significantly greater than larger particles. This difference may appear small but actually represents a large

Particle size analysis, if used in conjunction with other techniques such as fractionation and nutrient analyses, can be used for the characterization of aquaculture wastes and for moni‐ toring the improvement in wastewater treatment efficiency (Cripps 1994). Membranes can be used for fractionation; however these techniques on their own are limited in practical appli‐ cation. But when combined with other forms of analyses, such as nutrient concentration studies in a known volume of water, the determination of proper treatment techniques is simplified

Although we provided a detailed overview on the feasibility of using filters with various pore sizes, specifically the effectiveness of filters with 5 μm or smaller pore sizes, for the purpose of removing phosphorus and nitrogen, sedimentation is probably the most practical applica‐ tion to remove the large particles in the effluent before further filtration is applied to remove the particles bound to smaller particles which cannot be effectively removed via sedimentation. Sedimentation is discussed in detail in the settling basin section of this chapter. Commonly, screens are placed in front of pond discharge areas to prevent fish, leaves, twigs, or other large

difference in filtration effort (5-200 μm pore size).

debris from escaping in the pond effluent.

(Cripps 1996).

24 Sustainable Aquaculture Techniques

The smaller particles of colloidal clay settle slowly and they may impart unwanted turbidity to pond water (Boyd 1998). Some of the chemicals applied to aquaculture ponds to remove this undesired turbidity in pond waters include coagulants like alum (aluminum sulfate), ferric chloride, gypsum, lime and polymers. Although using organic matter to reduce turbidity has advantages from an environmental standpoint, this is difficult to obtain and apply to ponds (Boyd 1990). Coagulants are most often added to alter the physical state of dissolved and suspended solids, thereby facilitating their removal by filtration and sedimentation (Boyd and Tucker 1998; Pepper et al. 1996) (Figure 7). Coagulants destabilize colloids, thereby permitting suspended particles to form aggregates that can settle out of solution. Coagulation with alum, limestone or polyelectrolytes is very effective in removing suspended matter and phosphorus from water (Boyd and Tucker 1998).

**Figure 7.** Application of the chemical amendment, lime, to an aquaculture pond in Auburn, Alabama (Photo courtesy of Ozbay).

Boyd (1995) demonstrated that phosphorus precipitates from pond water as insoluble iron, aluminum, or calcium phosphates. Alum and ferric chloride are commercially available sources of aluminum and iron. Aluminum, calcium or iron based coagulants added to poultry litter reduced soluble phosphorus concentrations (Moore and Miller 1994). Gypsum (calcium sulfate) is a source of calcium, however, it is only suggested for use in low alkalinity waters (Boyd 1990). Boyd (1990) observed that alum treatment caused almost immediate flocculation of clay particles, and a great reduction in turbidity within 2 hours in all the treated ponds. However, application of alum produces a strong acidic reaction in water and its use should be limited. Boyd (1998 and 1995) suggested alum for pond treatment if alkalinity is 50 mg/L or above in the water. Alum can remove organic particles and clay colloids in association with phosphorus in water through coagulation and entrapment. Generally, aluminum precipitates with inorganic phosphorus as aluminum phosphate compounds (Gensemer and Playle 1999). Welch and Cooke (1999) applied alum to the surface of eutrophic lakes at rates ranging from 5.5 to 10.9 g Al/m3 . They found a 50% decrease in total phosphorus and chlorophyll a concen‐ trations. Cooke et al. (1993) investigated phosphorus removal in order to control algae blooms by using salts of iron, aluminum or calcium (ferric chloride, aluminum sulfate or calcium hydroxide). They reported aluminum salts as being most frequently used in lake restoration. Welch and Cooke (1999) observed decreased in cyanobacteria bio-volume after treatment with alum in unstratified lakes. Jacoby et al. (1994) found the magnitude and blooms of cyanobac‐ teria reduced after 2 consecutive years of alum and sodium aluminate treatments in a poly‐ mictic lake. Phosphorus, total phytoplankton, and chlorophyll a concentrations in hypereutrophic lakes were reduced in 3 years following liquid alum, 10 mg Al/L treatment. However, Rowan (2001) found that application of alum at the rate of 50 mg/L immediately after seining resulted in a somewhat greater removal rate of some pollutants during the first hours of settling, but did not result in significantly improved water quality. She suggested using alum after the first hour of settling from seining, and higher application rates of alum would have been necessary to precipitate significant amounts of phytoplankton. Masuda and Boyd (1994) used alum as low as 20 mg/L concentration for catfish pond water, and found significant removal of Soluble Reactive Phosphorus (SRP) in the pond water. They reported no residual effects of alum treatment if used at low concentration (20 mg/L). Boyd (1995a) noted that to increase the amounts of solids removed from water for shrimp ponds utilizing alum would necessitate alum treatment of water in a settling basin. In most situations, settling ponds may be adequate to remove suspended solids (Boyd 1995a).

ammonia volatilization, and kills pathogens, and they should not be used very frequently

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

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27

Gypsum has a neutral reaction in water but it has been the least effective of the three (alum, ferric chloride, and gypsum) coagulants used in removing clay turbidity (Boyd 2000; 1990). However, Boyd (1995) suggested that gypsum treatment is better for use in low alkalinity waters because gypsum is a good source of calcium, and is more soluble than liming materials (agricultural limestone, burnt lime, and hydrated lime). Masuda and Boyd (1994) reported drastic decrease in SRP concentration, and lower phytoplankton concentration when calcium concentration was elevated with gypsum application. The effects of gypsum treatment on water quality in sunfish ponds with high alkalinity and low hardness conditions were studied and the gypsum treatment reduced phosphorus concentrations and phytoplankton abundance

The effectiveness of several different compounds to immobilizing soluble reactive phosphorus found in soil from constructed wetlands was studied by Ann et al. (2000). They found that ferric chloride had immobilized the highest percentage of phosphorus in comparison to other amendments; alum, Ca(OH)2, calcite, and dolomite. These amendments were only effective if applied at higher rates in their study. Cooke et al. (1993) reported that phosphorus inactivation with iron salts has shown only short term effectiveness, and subsequent failure was attributed to sediment anoxia because phosphorus precipitation with iron salts is possible if the water sediment column is aerobic. However, Boyd (1995) reported that alum generally is cheaper

Ferric chloride is not suggested for frequent use in lake restoration because of the potential effects to redox reactions and relevant changes of pH on the solubility of iron-phosphate compounds. Under anaerobic condition, phosphorus bonded to the hydroxyl complexes of ferric iron is solubilized and released to the solution. Under anaerobic conditions, phosphorus from the sediments will be released to the water column therefore ferric chloride treatment for

Gutcho (1977) summarized the uses of polyelectrolytes and concluded that anionic, cationic, and nonionic polyelectrolytes are practical flocculating and clarifying agents in the clarification of water and sewage treatment. They are used in the removal of solids from various industrial wastes (mining, papermaking industries). Gutcho (1977) stated that polyelectrolytes if applied with ferric chloride are more effective in removal of phosphate and organic solids from municipal and wastewaters. Non-ionic polymer is generally applied to remove algae, diatoms, and organic contaminants in lakes and pond waters. Ozbay (2005) studied the effectiveness of gypsum, alum with agricultural limestone, ferric chloride, and ferric chloride with non-ionic polymer (polyacrylamide) removing excess nutrients and solids in the pond waters. She found alum with agricultural limestone treatment removed turbidity, suspended solids, and phosphorus during the sedimentation of pond effluents used in a laboratory set-up. Her research outcome was confirmed during her field application of alum with agricultural limestone and 1 hour was sufficient to remove most of the pollutants in the ponds. Figure 8 below shows the significant reduction in turbidity, TSS and ISS after alum with agriculture

phosphorus precipitation can only be possible in aerobic condition (Rowan 2001).

than ferric chloride for pond treatment, and commercially available.

because of their inhibition on microbial activity.

(Wu and Boyd 1990).

limestone application.

In ponds if acidity results from increased carbon dioxide and exchangeable aluminum in soil after chemical treatment, total alkalinity and total hardness concentrations are buffered by the applications of agricultural limestone, burnt lime, and hydrated lime (Boyd 1995a). Liming is applied simultaneously to neutralize H+ ions, and eliminate or reduce the risks associated with alum toxicity. Masuda and Boyd (1994) used agricultural limestone and alum in catfish pond water in order to reduce nutrient concentrations. Twenty mg/L alum treatment reduced soluble reactive phosphorus, 80%; total phosphorus, 50%; and turbidity, 45% in their study. Precipitation of phosphorus after calcium hydroxide was rapid and higher than agricultural limestone. Calcium carbonate or calcium hydroxide treatments were also applied to hard water lakes by Prepas et al. (1990) and they reported significant decreases in the concentrations of total phosphorus and chlorophyll-a, resulting increased calcite precipitation and higher phosphorus binding affinity to the sediments. On the other hand, Salonen and Varjo (2000) applied gypsum to a hypereutrophic lake and observed that the treatment reduced the chlorophyll-a concentration. Masuda and Boyd (1994) suggest agricultural limestone or burnt lime in removal of Soluble Reactive Phosphorus (SRP) in the ponds. Schwartz and Boyd (1996) suggested that application of hydrated lime or quick lime to pond bottoms enhances ammonia volatilization, and kills pathogens, and they should not be used very frequently because of their inhibition on microbial activity.

of clay particles, and a great reduction in turbidity within 2 hours in all the treated ponds. However, application of alum produces a strong acidic reaction in water and its use should be limited. Boyd (1998 and 1995) suggested alum for pond treatment if alkalinity is 50 mg/L or above in the water. Alum can remove organic particles and clay colloids in association with phosphorus in water through coagulation and entrapment. Generally, aluminum precipitates with inorganic phosphorus as aluminum phosphate compounds (Gensemer and Playle 1999). Welch and Cooke (1999) applied alum to the surface of eutrophic lakes at rates ranging from

trations. Cooke et al. (1993) investigated phosphorus removal in order to control algae blooms by using salts of iron, aluminum or calcium (ferric chloride, aluminum sulfate or calcium hydroxide). They reported aluminum salts as being most frequently used in lake restoration. Welch and Cooke (1999) observed decreased in cyanobacteria bio-volume after treatment with alum in unstratified lakes. Jacoby et al. (1994) found the magnitude and blooms of cyanobac‐ teria reduced after 2 consecutive years of alum and sodium aluminate treatments in a poly‐ mictic lake. Phosphorus, total phytoplankton, and chlorophyll a concentrations in hypereutrophic lakes were reduced in 3 years following liquid alum, 10 mg Al/L treatment. However, Rowan (2001) found that application of alum at the rate of 50 mg/L immediately after seining resulted in a somewhat greater removal rate of some pollutants during the first hours of settling, but did not result in significantly improved water quality. She suggested using alum after the first hour of settling from seining, and higher application rates of alum would have been necessary to precipitate significant amounts of phytoplankton. Masuda and Boyd (1994) used alum as low as 20 mg/L concentration for catfish pond water, and found significant removal of Soluble Reactive Phosphorus (SRP) in the pond water. They reported no residual effects of alum treatment if used at low concentration (20 mg/L). Boyd (1995a) noted that to increase the amounts of solids removed from water for shrimp ponds utilizing alum would necessitate alum treatment of water in a settling basin. In most situations, settling ponds

In ponds if acidity results from increased carbon dioxide and exchangeable aluminum in soil after chemical treatment, total alkalinity and total hardness concentrations are buffered by the applications of agricultural limestone, burnt lime, and hydrated lime (Boyd 1995a). Liming is

alum toxicity. Masuda and Boyd (1994) used agricultural limestone and alum in catfish pond water in order to reduce nutrient concentrations. Twenty mg/L alum treatment reduced soluble reactive phosphorus, 80%; total phosphorus, 50%; and turbidity, 45% in their study. Precipitation of phosphorus after calcium hydroxide was rapid and higher than agricultural limestone. Calcium carbonate or calcium hydroxide treatments were also applied to hard water lakes by Prepas et al. (1990) and they reported significant decreases in the concentrations of total phosphorus and chlorophyll-a, resulting increased calcite precipitation and higher phosphorus binding affinity to the sediments. On the other hand, Salonen and Varjo (2000) applied gypsum to a hypereutrophic lake and observed that the treatment reduced the chlorophyll-a concentration. Masuda and Boyd (1994) suggest agricultural limestone or burnt lime in removal of Soluble Reactive Phosphorus (SRP) in the ponds. Schwartz and Boyd (1996) suggested that application of hydrated lime or quick lime to pond bottoms enhances

ions, and eliminate or reduce the risks associated with

may be adequate to remove suspended solids (Boyd 1995a).

applied simultaneously to neutralize H+

. They found a 50% decrease in total phosphorus and chlorophyll a concen‐

5.5 to 10.9 g Al/m3

26 Sustainable Aquaculture Techniques

Gypsum has a neutral reaction in water but it has been the least effective of the three (alum, ferric chloride, and gypsum) coagulants used in removing clay turbidity (Boyd 2000; 1990). However, Boyd (1995) suggested that gypsum treatment is better for use in low alkalinity waters because gypsum is a good source of calcium, and is more soluble than liming materials (agricultural limestone, burnt lime, and hydrated lime). Masuda and Boyd (1994) reported drastic decrease in SRP concentration, and lower phytoplankton concentration when calcium concentration was elevated with gypsum application. The effects of gypsum treatment on water quality in sunfish ponds with high alkalinity and low hardness conditions were studied and the gypsum treatment reduced phosphorus concentrations and phytoplankton abundance (Wu and Boyd 1990).

The effectiveness of several different compounds to immobilizing soluble reactive phosphorus found in soil from constructed wetlands was studied by Ann et al. (2000). They found that ferric chloride had immobilized the highest percentage of phosphorus in comparison to other amendments; alum, Ca(OH)2, calcite, and dolomite. These amendments were only effective if applied at higher rates in their study. Cooke et al. (1993) reported that phosphorus inactivation with iron salts has shown only short term effectiveness, and subsequent failure was attributed to sediment anoxia because phosphorus precipitation with iron salts is possible if the water sediment column is aerobic. However, Boyd (1995) reported that alum generally is cheaper than ferric chloride for pond treatment, and commercially available.

Ferric chloride is not suggested for frequent use in lake restoration because of the potential effects to redox reactions and relevant changes of pH on the solubility of iron-phosphate compounds. Under anaerobic condition, phosphorus bonded to the hydroxyl complexes of ferric iron is solubilized and released to the solution. Under anaerobic conditions, phosphorus from the sediments will be released to the water column therefore ferric chloride treatment for phosphorus precipitation can only be possible in aerobic condition (Rowan 2001).

Gutcho (1977) summarized the uses of polyelectrolytes and concluded that anionic, cationic, and nonionic polyelectrolytes are practical flocculating and clarifying agents in the clarification of water and sewage treatment. They are used in the removal of solids from various industrial wastes (mining, papermaking industries). Gutcho (1977) stated that polyelectrolytes if applied with ferric chloride are more effective in removal of phosphate and organic solids from municipal and wastewaters. Non-ionic polymer is generally applied to remove algae, diatoms, and organic contaminants in lakes and pond waters. Ozbay (2005) studied the effectiveness of gypsum, alum with agricultural limestone, ferric chloride, and ferric chloride with non-ionic polymer (polyacrylamide) removing excess nutrients and solids in the pond waters. She found alum with agricultural limestone treatment removed turbidity, suspended solids, and phosphorus during the sedimentation of pond effluents used in a laboratory set-up. Her research outcome was confirmed during her field application of alum with agricultural limestone and 1 hour was sufficient to remove most of the pollutants in the ponds. Figure 8 below shows the significant reduction in turbidity, TSS and ISS after alum with agriculture limestone application.

**3.5. Biological amendments**

Increased awareness concerning environmental issues has been intensified by the constant pressure propagating from agricultural activities and more specifically from aquaculture farming. Many aquaculture farms have invested in alternative methods to minimize their environmental foot prints and keep their operations profitable. Phytoplankton is an important component of estuaries and coastal waters, reaching high population densities and accounting for a large fraction of the particulate matter in these systems (Wright et al. 1982). Considering high organic loading and detritus inputs from aquaculture effluents, further increase in phytoplankton abundance may become detrimental to estuarine health. Fish reared semiintensively and intensively on formulated diets generate wastes containing organic particles and soluble nutrients. As a result, un-utilized feed and feces generate additional sources of nutrients, which result in higher abundances of phytoplankton (Lin et al. 1998). Phytoplankton blooms have a drastic effect on the water quality in receiving waters of estuaries and rivers. During the last few decades, many studies have focused on reducing the secondary effects of poor water quality by means of introducing chemicals (copper sulfate, herbicides…etc.) or introducing herbivorous fish species (tilapia, carp, etc.), or introducing filter-feeding bivalves in order to eliminate the problems associated with heavy phytoplankton blooms (Ozbay 2002). An alternative method which consisted of rearing manila clams to treat the marine fish pond effluents was attempted in Israel by Shpigel and Fridman (1990). The effluents from gilthead sea bream ponds which contained potential edible organic loading were then passed through manila clams in the effluent pond. They improved water quality by using manila clam as the filter-feeding bivalve in their study, and were able to simultaneously produce a high value product, the manila clam itself. Using manila clams to remove the organic loading, primarily phytoplankton, was an effective method to minimize the nutrient loads in pond effluents, and also produce an additional product for the market. Shpigel and Fridman (1990) also found manila clam to be very adaptable to changes in temperature, salinity, and high organic loading (i.e. phytoplankton) making them an ideal candidate for treating intensive aquaculture effluents. They suggested that this type of operation might have the potential for improving

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

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29

water quality depending on the pond conditions and species cultured.

Newell et al. (1999) found that the eastern oyster can exert a top-down control on phytoplank‐ ton stocks and also reduce turbidity, thereby increasing light available to benthic communities. Rehabilitation of natural oyster stocks has the beneficial effect of removing phytoplankton from the water column without stimulating further phytoplankton production. Rensel et al. (2011) investigated nutrient and phytoplankton removal and shellfish growth near the salmon pens. They monitored the highest oyster growth near the salmon pens due to food availability caused by the nutrients in fish feces. Although they did not find substantial differences in water quality parameters, phytoplankton was constantly available and removed by the Pacific oysters (*Crassostrea gigas*). Chrzanowski et al. (1986) investigated the ability of an oyster reef community to remove suspended microbial biomass and observed significant reduction in the suspended microbial biomass. Toro et al. (1999) found a significant negative relationship between oyster growth and amount of particulate inorganic and organic matter in water. Higher organic matters increase oyster growth via their filtration of phytoplankton in the

**Figure 8.** Means (±SE) of turbidity, total suspended solids (TSS), and inorganic suspended solids (ISS) concentrations in alum with agricultural limestone, gypsum, ferric chloride, and ferric chloride with polymer ((polyacrylamide) treated and control over a 72-72 hour sedimentation period, N=3 (Ozbay 2005).

Regardless of the chemicals selected for the aquaculture pond treatments, chemical treatment options should be minimized and carefully selected considering their effects on pond sediment pH and potential to increase solubility of various harmful metals.

#### **3.5. Biological amendments**

**Figure 8.** Means (±SE) of turbidity, total suspended solids (TSS), and inorganic suspended solids (ISS) concentrations in alum with agricultural limestone, gypsum, ferric chloride, and ferric chloride with polymer ((polyacrylamide) treated

Regardless of the chemicals selected for the aquaculture pond treatments, chemical treatment options should be minimized and carefully selected considering their effects on pond sediment

and control over a 72-72 hour sedimentation period, N=3 (Ozbay 2005).

28 Sustainable Aquaculture Techniques

pH and potential to increase solubility of various harmful metals.

Increased awareness concerning environmental issues has been intensified by the constant pressure propagating from agricultural activities and more specifically from aquaculture farming. Many aquaculture farms have invested in alternative methods to minimize their environmental foot prints and keep their operations profitable. Phytoplankton is an important component of estuaries and coastal waters, reaching high population densities and accounting for a large fraction of the particulate matter in these systems (Wright et al. 1982). Considering high organic loading and detritus inputs from aquaculture effluents, further increase in phytoplankton abundance may become detrimental to estuarine health. Fish reared semiintensively and intensively on formulated diets generate wastes containing organic particles and soluble nutrients. As a result, un-utilized feed and feces generate additional sources of nutrients, which result in higher abundances of phytoplankton (Lin et al. 1998). Phytoplankton blooms have a drastic effect on the water quality in receiving waters of estuaries and rivers.

During the last few decades, many studies have focused on reducing the secondary effects of poor water quality by means of introducing chemicals (copper sulfate, herbicides…etc.) or introducing herbivorous fish species (tilapia, carp, etc.), or introducing filter-feeding bivalves in order to eliminate the problems associated with heavy phytoplankton blooms (Ozbay 2002).

An alternative method which consisted of rearing manila clams to treat the marine fish pond effluents was attempted in Israel by Shpigel and Fridman (1990). The effluents from gilthead sea bream ponds which contained potential edible organic loading were then passed through manila clams in the effluent pond. They improved water quality by using manila clam as the filter-feeding bivalve in their study, and were able to simultaneously produce a high value product, the manila clam itself. Using manila clams to remove the organic loading, primarily phytoplankton, was an effective method to minimize the nutrient loads in pond effluents, and also produce an additional product for the market. Shpigel and Fridman (1990) also found manila clam to be very adaptable to changes in temperature, salinity, and high organic loading (i.e. phytoplankton) making them an ideal candidate for treating intensive aquaculture effluents. They suggested that this type of operation might have the potential for improving water quality depending on the pond conditions and species cultured.

Newell et al. (1999) found that the eastern oyster can exert a top-down control on phytoplank‐ ton stocks and also reduce turbidity, thereby increasing light available to benthic communities. Rehabilitation of natural oyster stocks has the beneficial effect of removing phytoplankton from the water column without stimulating further phytoplankton production. Rensel et al. (2011) investigated nutrient and phytoplankton removal and shellfish growth near the salmon pens. They monitored the highest oyster growth near the salmon pens due to food availability caused by the nutrients in fish feces. Although they did not find substantial differences in water quality parameters, phytoplankton was constantly available and removed by the Pacific oysters (*Crassostrea gigas*). Chrzanowski et al. (1986) investigated the ability of an oyster reef community to remove suspended microbial biomass and observed significant reduction in the suspended microbial biomass. Toro et al. (1999) found a significant negative relationship between oyster growth and amount of particulate inorganic and organic matter in water. Higher organic matters increase oyster growth via their filtration of phytoplankton in the organic matter. Ulanowicz and Tuttle (1992) observed that oyster abundance decreased phytoplankton productivity as well as stocks of pelagic microbes, ctenophores, medusae, and particulate organic carbon. Reduction in turbidity resulted from the removal of suspended solids including inorganic particles and phytoplankton by the oysters that oyster filtration plays an important role for increasing light penetration in the water column (Leffler 2001). Miura and Yamshiro (1990) recorded that phytoplanktivorous freshwater bivalves reduce phytoplankton blooms in the water outflow from fish tanks. Lowe et al. (1991) used mussels to increase water transparency in a lake and also observed a shift toward increased densities of benthic algae and recorded an increase in the visibility of water. Senichieva (1990) observed that actively filtrating mussels transform algae and microorganisms into feces and pseudo feces. Santelices and Martines (1986) found that the production of fecal material by filter feeders function as a fertilizer, and stimulated macroalgae growth that provides a venue to the farmers to integrate filter feeders and macroalgae.

limited but similar services as the natural oyster reefs, they can still effectively remove

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31

Cultured oysters can serve as broodstock, contributing to enhance and promote naturally occurring populations in the bays. Consecutive research by Marenghi and Ozbay (2010a) and Reckenbeil (2013) found newly settled juvenile oysters within floating oyster gear in manmade, residential canal systems, and on riprap shorelines for the first time around the Delaware Inland Bays (DIB). It appears that the small scale oyster aquaculture for restoration yields hopeful results within the impaired estuarine conditions as more signs of natural recruitment were observed at several locations within the DIB (Marenghi and Ozbay 2010b).

Rice (2008) discussed how biodeposition of filter feeders, such as bivalves, transfer organic nitrogen in phytoplankton and suspended particles in the water to the sediment. Filter feeding bivalves cycle nitrogen and phosphorus which play an important role in maintaining aquatic productivity (Rice 2008). Similar to Rice (2008), Lin et al. (1993) stated that shrimp-bivalve integrated culture systems in Thailand served as a biological control on phytoplankton populations, thus relieving the nighttime BOD stress. Wright et al. (1982) observed bivalve filtration of natural marine bacterioplankton and their reduction in the presence of bivalves.

Boyd and Queiroz (1997) investigated the feasibility of using salt-tolerant plants (halo‐ phytes) that were used as crop plants to remove nutrients from the effluent wastewater stream. The plant-soil system sequestered inorganic nitrite and phosphorus, and removed over 94% and 97% of the applied inorganic nitrogen and phosphorus. Wilson et al. (2002) summarized the use of plankton-feeding fish threadfin shad with channel catfish and monitored improved water quality conditions and enhanced catfish survival in the ponds with threadfin fish. Improvement in catfish production through the use of the Partitioned Aquaculture System (PAS) indicated that PAS offers the potential to eliminate blue-green algal dominance and associated off-flavor problems, while recovering wasted nitrogen and phosphorus discharges, which pose the threat of eutrophication to surface and groundwa‐

In Yingbin Bay, China, the farmers set a large integrated aquaculture system that is capable of removing excess nutrients. By integrating seaweed and abalone into their main operation for shrimp culture, they were able to improve water quality. Pond bottoms are passed through seaweed and abalone to allow nutrients to be removed before using for shrimp grow-out ponds (Bennett et al. 2012). The authors found that farmers prefer seaweed farming because it reduces financial risks and leads to more consistent profits than shrimp farming however shrimp

Boyd and Tucker (1998) stated that the grass carp, the common carp, and certain species of tilapia have been evaluated for control of larger plant forms, including filamentous macroal‐ gae. Plankton-feeding fish such as silver carp, bighead carp, tilapias, and gizzard shad are frequently employed in the ponds. Figure 9 shows the pictures of integrated aquaculture farm practices around the world and last picture is the illustration of the multi-trophic aquaculture

ter supplies (Wilson et al. 2002).

farming is more profitable for them.

system.

nutrients and control phytoplankton as they do in nature (Ozbay et al. 2013).

Filter feeding bivalves provide a strong venue for the marine finfish farmers to cope with excess nutrient issues that are a result of un-eaten fish feeds and feces. Through their filtration activities, those filter feeders remove phytoplankton which results from additional nutrients introduced to the system. Various commercially and ecologically important species are dependent on oyster reefs for feeding, reproduction, and shelter from predators, including the naked goby (*Gobiosoma bosc*), skilletfish (*Gobiesox strumosus*), striped blenny, (*Chasmodes bosquianus*), and oyster toadfish (*Opsanus tau*) (Marenghi and Ozbay 2010a,b). There is a unique feeding cycle as these resident fishes feed primarily on benthic invertebrates and fish eggs and they also prey on other benthic fishes and will also eat each other while mud crabs (*Panopeus herbstii*) prey upon their eggs (Harding and Mann 2000). Although not oyster reef obligate, there are many other species that utilize oyster reefs including: black sea bass (*Centropristis striata*), northern pipefish (*Syngathus fuscus*), and Atlantic spadefish (*Chaetodipterus faber*) (Harding and Mann 2000). Oyster shells create habitat and serve as spawning substrate for the Florida blenny (*Chasmodes saburrae*), feather blenny (*Hypsoblennius hentz*) and the frillfin goby (*Bathygobius soporator*) (Tolley and Volety 2005). The larger, more transient, bottom-feeding species such as striped bass (*Morone saxatilis*), juvenile summer flounder (*Paralichthys denta‐ tus*), juvenile winter flounder (*Pleuronectes americanus*), spot (*Leiostomus xanthurus*), black drum (*Pogonias cromis*), American eel (*Anguilla rostrata*), and Atlantic silverside (*Menidia menidia*) also utilize oyster reefs for feeding (Breitburg 1999).

Oyster reefs provide nursery habitat for many economically important juvenile species. Posey (1999) discussed why these reefs become important habitat for those species when natural seagrass beds are limited or absent because of environmental degradation. It is important to mention that 10 m2 of restored oyster reef in the southeast United States is estimated to yield an additional 2.6 kg per year of production of fish and large mobile crustaceans (Peterson et al. 2003). Various ways reefs enhance fish production include increased recruitment, providing refuge from predation, and providing reef-associated prey (Peterson et al. 2003). Because an average size oyster filters 76 liters of water per day, they play a significant role in maintaining natural habitats (The Nature Conservancy 2013). Although aquacultured oysters provide limited but similar services as the natural oyster reefs, they can still effectively remove nutrients and control phytoplankton as they do in nature (Ozbay et al. 2013).

organic matter. Ulanowicz and Tuttle (1992) observed that oyster abundance decreased phytoplankton productivity as well as stocks of pelagic microbes, ctenophores, medusae, and particulate organic carbon. Reduction in turbidity resulted from the removal of suspended solids including inorganic particles and phytoplankton by the oysters that oyster filtration plays an important role for increasing light penetration in the water column (Leffler 2001). Miura and Yamshiro (1990) recorded that phytoplanktivorous freshwater bivalves reduce phytoplankton blooms in the water outflow from fish tanks. Lowe et al. (1991) used mussels to increase water transparency in a lake and also observed a shift toward increased densities of benthic algae and recorded an increase in the visibility of water. Senichieva (1990) observed that actively filtrating mussels transform algae and microorganisms into feces and pseudo feces. Santelices and Martines (1986) found that the production of fecal material by filter feeders function as a fertilizer, and stimulated macroalgae growth that provides a venue to the farmers

Filter feeding bivalves provide a strong venue for the marine finfish farmers to cope with excess nutrient issues that are a result of un-eaten fish feeds and feces. Through their filtration activities, those filter feeders remove phytoplankton which results from additional nutrients introduced to the system. Various commercially and ecologically important species are dependent on oyster reefs for feeding, reproduction, and shelter from predators, including the naked goby (*Gobiosoma bosc*), skilletfish (*Gobiesox strumosus*), striped blenny, (*Chasmodes bosquianus*), and oyster toadfish (*Opsanus tau*) (Marenghi and Ozbay 2010a,b). There is a unique feeding cycle as these resident fishes feed primarily on benthic invertebrates and fish eggs and they also prey on other benthic fishes and will also eat each other while mud crabs (*Panopeus herbstii*) prey upon their eggs (Harding and Mann 2000). Although not oyster reef obligate, there are many other species that utilize oyster reefs including: black sea bass (*Centropristis striata*), northern pipefish (*Syngathus fuscus*), and Atlantic spadefish (*Chaetodipterus faber*) (Harding and Mann 2000). Oyster shells create habitat and serve as spawning substrate for the Florida blenny (*Chasmodes saburrae*), feather blenny (*Hypsoblennius hentz*) and the frillfin goby (*Bathygobius soporator*) (Tolley and Volety 2005). The larger, more transient, bottom-feeding species such as striped bass (*Morone saxatilis*), juvenile summer flounder (*Paralichthys denta‐ tus*), juvenile winter flounder (*Pleuronectes americanus*), spot (*Leiostomus xanthurus*), black drum (*Pogonias cromis*), American eel (*Anguilla rostrata*), and Atlantic silverside (*Menidia menidia*) also

Oyster reefs provide nursery habitat for many economically important juvenile species. Posey (1999) discussed why these reefs become important habitat for those species when natural seagrass beds are limited or absent because of environmental degradation. It is important to mention that 10 m2 of restored oyster reef in the southeast United States is estimated to yield an additional 2.6 kg per year of production of fish and large mobile crustaceans (Peterson et al. 2003). Various ways reefs enhance fish production include increased recruitment, providing refuge from predation, and providing reef-associated prey (Peterson et al. 2003). Because an average size oyster filters 76 liters of water per day, they play a significant role in maintaining natural habitats (The Nature Conservancy 2013). Although aquacultured oysters provide

to integrate filter feeders and macroalgae.

30 Sustainable Aquaculture Techniques

utilize oyster reefs for feeding (Breitburg 1999).

Cultured oysters can serve as broodstock, contributing to enhance and promote naturally occurring populations in the bays. Consecutive research by Marenghi and Ozbay (2010a) and Reckenbeil (2013) found newly settled juvenile oysters within floating oyster gear in manmade, residential canal systems, and on riprap shorelines for the first time around the Delaware Inland Bays (DIB). It appears that the small scale oyster aquaculture for restoration yields hopeful results within the impaired estuarine conditions as more signs of natural recruitment were observed at several locations within the DIB (Marenghi and Ozbay 2010b).

Rice (2008) discussed how biodeposition of filter feeders, such as bivalves, transfer organic nitrogen in phytoplankton and suspended particles in the water to the sediment. Filter feeding bivalves cycle nitrogen and phosphorus which play an important role in maintaining aquatic productivity (Rice 2008). Similar to Rice (2008), Lin et al. (1993) stated that shrimp-bivalve integrated culture systems in Thailand served as a biological control on phytoplankton populations, thus relieving the nighttime BOD stress. Wright et al. (1982) observed bivalve filtration of natural marine bacterioplankton and their reduction in the presence of bivalves.

Boyd and Queiroz (1997) investigated the feasibility of using salt-tolerant plants (halo‐ phytes) that were used as crop plants to remove nutrients from the effluent wastewater stream. The plant-soil system sequestered inorganic nitrite and phosphorus, and removed over 94% and 97% of the applied inorganic nitrogen and phosphorus. Wilson et al. (2002) summarized the use of plankton-feeding fish threadfin shad with channel catfish and monitored improved water quality conditions and enhanced catfish survival in the ponds with threadfin fish. Improvement in catfish production through the use of the Partitioned Aquaculture System (PAS) indicated that PAS offers the potential to eliminate blue-green algal dominance and associated off-flavor problems, while recovering wasted nitrogen and phosphorus discharges, which pose the threat of eutrophication to surface and groundwa‐ ter supplies (Wilson et al. 2002).

In Yingbin Bay, China, the farmers set a large integrated aquaculture system that is capable of removing excess nutrients. By integrating seaweed and abalone into their main operation for shrimp culture, they were able to improve water quality. Pond bottoms are passed through seaweed and abalone to allow nutrients to be removed before using for shrimp grow-out ponds (Bennett et al. 2012). The authors found that farmers prefer seaweed farming because it reduces financial risks and leads to more consistent profits than shrimp farming however shrimp farming is more profitable for them.

Boyd and Tucker (1998) stated that the grass carp, the common carp, and certain species of tilapia have been evaluated for control of larger plant forms, including filamentous macroal‐ gae. Plankton-feeding fish such as silver carp, bighead carp, tilapias, and gizzard shad are frequently employed in the ponds. Figure 9 shows the pictures of integrated aquaculture farm practices around the world and last picture is the illustration of the multi-trophic aquaculture system.

and last picture is the illustration of the multi-trophic aquaculture system.

Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **20**

In Yingbin Bay, China, the farmers set a large integrated aquaculture system that is capable of removing excess nutrients. By integrating seaweed and abalone into their main operation for shrimp culture, they were able to improve water quality. Pond bottoms are passed through seaweed and abalone to allow nutrients to be removed before using for shrimp grow-out ponds (Bennett et al. 2012). The authors found that farmers prefer seaweed farming because it reduces financial risks and leads to more consistent profits than shrimp

> decreases its negative environmental footprint. An aquaculture operation consisting of blue mussels and kelps located near pre-established Atlantic salmon aquaculture sites could substantially increase water quality and profits for the farmers in question. We provided a detailed overview on recirculating aquaculture systems and associated aquaponics systems, and their applications for integrated farming practices which ideally will result in economic

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

33

Discharge of unused nutrients in effluents impacts eutrophication and different ecological measures. Impacts from aquaculture feed derived wastes have been observed on the natural environments (Gowen 1991). Boyd and Queiroz (1997) reported that in channel fish ponds in the United States, pond water quality was correlated to stocking and feeding rates. Water quality rapidly deteriorates at feeding rates above 100 - 120 kg/ha per day. In ponds utilized for fertilization and feeding, water quality is related primarily to nutrient input rates. Boyd and Queiroz (1997) stated that part of the nutrients in feeds and fertilizers is recovered in the harvested product, but the remaining nutrients enter the pond ecosystem as inorganic nitrogen, phosphorus, and carbon, dissolved and particulate organic matter. Therefore, relatively small percentages of nitrogen, phosphorus, and organic carbon are recovered in the harvested product. Consequently, the concentrations of nutrients and organic matter in the pond waters and the amount of organic matter settling onto bottoms increase as fertilization

High quality feeds improve feed conversion ratios and reduce quantities of metabolic wastes and uneaten feed (Schwartz and Boyd 1996). Conservative feeding practices, and lower stocking rates also reduces feed inputs and improves feed conversion ratios (Boyd et al. 2000). Feeds are the ultimate source of organic matter pollution in catfish pond effluents (Boyd et al. 2000). The main types of wastes in aquaculture are residual feed particles, fecal matter, and metabolic by-products. Inefficient feed conversion results in poorer quality effluents and also decreases the concentrations of dissolved oxygen as shown in Figure 10. In a study by Filbrun and Culver (2013), dissolved oxygen levels in the ponds were increased by decreasing the feeding rates. The nitrogen in uneaten feed is transformed to ammonia by bacteria. Ammonia nitrogen tends to increase as feed application to a pond increases, and concentrations above 2 mg/L can be very harmful to aquaculture species at high pH (Gross et al. 1999). Ammonia is

Cripps (1995) stated that it is likely that ponds containing specific sized particles would have elevated nutrient concentrations, resulting from their origin in the diet. Abou et al. (2012) demonstrated that using fern (*Azolla spp.*) as a fish meal substitute for Nile Tilapia had tremendously limited phosphorous loss in the effluent and is considered environment friendly. Coloso et al. (2001) found that soluble phosphorus discharge in effluent water can be reduced in fish fed diets that contained little or no fishmeal, or in diets that were supplemented with a low level of dietary phosphorus. In their rainbow trout study, the dietary combination of low phosphorus and high vitamin D3 decreased soluble and fecal phosphorus levels in the effluents, indicating a strategy whereby effluent phosphorus concentrations can be reduced

and ecological benefits in our next sections.

**3.6. Feeding and diet manipulation**

and feeding rates increase.

also added to ponds through fish excretions.

threadfin shad with channel catfish and monitored improved water quality conditions and enhanced catfish survival in the ponds with threadfin fish. Improvement in catfish production through the use of the Partitioned Aquaculture System (PAS) indicated that PAS offers the potential to eliminate blue-green algal dominance and associated off-flavor problems, while recovering wasted nitrogen and phosphorus

control of larger plant forms, including filamentous macroalgae. Plankton-feeding fish such as silver carp, bighead carp, tilapias, and gizzard shad are frequently employed in the ponds. Figure 9 shows the pictures of integrated aquaculture farm practices around the world

discharges, which pose the threat of eutrophication to surface and groundwater supplies (Wilson et al. 2002).

(http://land.allears.net/blogs/jackspence); **b.** TamilNadu Agricultural University horticulture fish farming integrated system (agritech.tnau.ac.in); **c.** Malawi fish farm and fruit trees along the edges (http://www.afap.org/africa\_masasa); **d**. shellfish macroalgae culture (E & T Magazine, eandt.theiet.org); and **e.** Integrated Multi-trophic Aquaculture Schema (Government of Canada, dfo-mpo.gc.ca). Tseng et al. (1991) reported that low concentrations of ammonia nitrogen and optimum algal density are better for controlling dissolved oxygen levels in tilapia ponds. Generally, microalgae stabilize pond water quality via either ammonia uptake or oxygen production. Burke and Bayne (1986) studied the effects of paddlefish on zooplankton, chlorophyll *a*, total ammonia nitrogen, and nitrite in **Figure 9.** Pictures of various integrated farm practices around the world; a. tilapia culture with hydroponics herbs cul‐ ture (http://land.allears.net/blogs/jackspence); b. TamilNadu Agricultural University horticulture fish farming integrat‐ ed system (agritech.tnau.ac.in); c. Malawi fish farm and fruit trees along the edges (http://www.afap.org/ africa\_masasa); d. shellfish macroalgae culture (E & T Magazine, eandt.theiet.org); and e. Integrated Multi-trophic Aquaculture Schema (Government of Canada, dfo-mpo.gc.ca).

a yearling paddlefish-catfish polyculture system. Higher seasonal mean chlorophyll *a* concentrations associated with lower zooplankton

 **Figure 9.** Pictures of various integrated farm practices around the world; **a.** tilapia culture with hydroponics herbs culture

densities were measured in paddlefish treatment ponds. Smith (1985) found that filter feeders reduced algal biomass as much as 99%, increased phytoplankton diversity, and improved silver carp growth compared with other ponds without filter feeders, because filter feeders allowed high densities of zooplankters to remain and be available for fish. Fott et al. (1979) introduced carp in whitefish ponds and observed an increase in light penetration while primary production of phytoplankton and small zooplankton concentrations decrease substantially in the ponds. During the last few decades integrated aquaculture practices have become a popular method to reduce the nutrient loads and pollutants entering natural waterways, and also increase profits by culturing more than one species of animal and/or plant. Canadian Tseng et al. (1991) reported that low concentrations of ammonia nitrogen and optimum algal density are better for controlling dissolved oxygen levels in tilapia ponds. Generally, micro‐ algae stabilize pond water quality via either ammonia uptake or oxygen production. Burke and Bayne (1986) studied the effects of paddlefish on zooplankton, chlorophyll *a*, total ammonia nitrogen, and nitrite in a yearling paddlefish-catfish polyculture system. Higher seasonal mean chlorophyll *a* concentrations associated with lower zooplankton densities were measured in paddlefish treatment ponds. Smith (1985) found that filter feeders reduced algal biomass as much as 99%, increased phytoplankton diversity, and improved silver carp growth compared with other ponds without filter feeders, because filter feeders allowed high densities of zooplankters to remain and be available for fish. Fott et al. (1979) introduced carp in whitefish ponds and observed an increase in light penetration while primary production of phytoplankton and small zooplankton concentrations decrease substantially in the ponds.

During the last few decades integrated aquaculture practices have become a popular method to reduce the nutrient loads and pollutants entering natural waterways, and also increase profits by culturing more than one species of animal and/or plant. Canadian Aquaculture (2012) describes integrated multi-trophic aquaculture systems as the farming of various aquaculture species together where feces of one species serve as the feed to another, as demonstrated in fish /bivalve relationships. This system also increases profits for the farm and decreases its negative environmental footprint. An aquaculture operation consisting of blue mussels and kelps located near pre-established Atlantic salmon aquaculture sites could substantially increase water quality and profits for the farmers in question. We provided a detailed overview on recirculating aquaculture systems and associated aquaponics systems, and their applications for integrated farming practices which ideally will result in economic and ecological benefits in our next sections.

#### **3.6. Feeding and diet manipulation**

Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **20**

In Yingbin Bay, China, the farmers set a large integrated aquaculture system that is capable of removing excess nutrients. By integrating seaweed and abalone into their main operation for shrimp culture, they were able to improve water quality. Pond bottoms are passed through seaweed and abalone to allow nutrients to be removed before using for shrimp grow-out ponds (Bennett et al. 2012). The authors found that farmers prefer seaweed farming because it reduces financial risks and leads to more consistent profits than shrimp

Boyd and Tucker (1998) stated that the grass carp, the common carp, and certain species of tilapia have been evaluated for control of larger plant forms, including filamentous macroalgae. Plankton-feeding fish such as silver carp, bighead carp, tilapias, and gizzard shad are frequently employed in the ponds. Figure 9 shows the pictures of integrated aquaculture farm practices around the world

**a b c**

 **Figure 9.** Pictures of various integrated farm practices around the world; **a.** tilapia culture with hydroponics herbs culture (http://land.allears.net/blogs/jackspence); **b.** TamilNadu Agricultural University horticulture fish farming integrated system (agritech.tnau.ac.in); **c.** Malawi fish farm and fruit trees along the edges (http://www.afap.org/africa\_masasa); **d**. shellfish macroalgae culture (E & T Magazine, eandt.theiet.org); and **e.** Integrated Multi-trophic Aquaculture Schema (Government of Canada, dfo-mpo.gc.ca).

**Figure 9.** Pictures of various integrated farm practices around the world; a. tilapia culture with hydroponics herbs cul‐ ture (http://land.allears.net/blogs/jackspence); b. TamilNadu Agricultural University horticulture fish farming integrat‐ ed system (agritech.tnau.ac.in); c. Malawi fish farm and fruit trees along the edges (http://www.afap.org/ africa\_masasa); d. shellfish macroalgae culture (E & T Magazine, eandt.theiet.org); and e. Integrated Multi-trophic

Tseng et al. (1991) reported that low concentrations of ammonia nitrogen and optimum algal density are better for controlling dissolved oxygen levels in tilapia ponds. Generally, micro‐ algae stabilize pond water quality via either ammonia uptake or oxygen production. Burke and Bayne (1986) studied the effects of paddlefish on zooplankton, chlorophyll *a*, total ammonia nitrogen, and nitrite in a yearling paddlefish-catfish polyculture system. Higher seasonal mean chlorophyll *a* concentrations associated with lower zooplankton densities were measured in paddlefish treatment ponds. Smith (1985) found that filter feeders reduced algal biomass as much as 99%, increased phytoplankton diversity, and improved silver carp growth compared with other ponds without filter feeders, because filter feeders allowed high densities of zooplankters to remain and be available for fish. Fott et al. (1979) introduced carp in whitefish ponds and observed an increase in light penetration while primary production of phytoplankton and small zooplankton concentrations decrease substantially in the ponds. During the last few decades integrated aquaculture practices have become a popular method to reduce the nutrient loads and pollutants entering natural waterways, and also increase profits by culturing more than one species of animal and/or plant. Canadian Aquaculture (2012) describes integrated multi-trophic aquaculture systems as the farming of various aquaculture species together where feces of one species serve as the feed to another, as demonstrated in fish /bivalve relationships. This system also increases profits for the farm and

Tseng et al. (1991) reported that low concentrations of ammonia nitrogen and optimum algal density are better for controlling dissolved oxygen levels in tilapia ponds. Generally, microalgae stabilize pond water quality via either ammonia uptake or oxygen production. Burke and Bayne (1986) studied the effects of paddlefish on zooplankton, chlorophyll *a*, total ammonia nitrogen, and nitrite in a yearling paddlefish-catfish polyculture system. Higher seasonal mean chlorophyll *a* concentrations associated with lower zooplankton densities were measured in paddlefish treatment ponds. Smith (1985) found that filter feeders reduced algal biomass as much as 99%, increased phytoplankton diversity, and improved silver carp growth compared with other ponds without filter feeders, because filter feeders allowed high densities of zooplankters to remain and be available for fish. Fott et al. (1979) introduced carp in whitefish ponds and observed an increase in light penetration while primary production of phytoplankton and small zooplankton concentrations decrease

During the last few decades integrated aquaculture practices have become a popular method to reduce the nutrient loads and pollutants entering natural waterways, and also increase profits by culturing more than one species of animal and/or plant. Canadian

threadfin shad with channel catfish and monitored improved water quality conditions and enhanced catfish survival in the ponds with threadfin fish. Improvement in catfish production through the use of the Partitioned Aquaculture System (PAS) indicated that PAS offers the potential to eliminate blue-green algal dominance and associated off-flavor problems, while recovering wasted nitrogen and phosphorus

discharges, which pose the threat of eutrophication to surface and groundwater supplies (Wilson et al. 2002).

farming however shrimp farming is more profitable for them.

32 Sustainable Aquaculture Techniques

substantially in the ponds.

and last picture is the illustration of the multi-trophic aquaculture system.

**d e**

Aquaculture Schema (Government of Canada, dfo-mpo.gc.ca).

Discharge of unused nutrients in effluents impacts eutrophication and different ecological measures. Impacts from aquaculture feed derived wastes have been observed on the natural environments (Gowen 1991). Boyd and Queiroz (1997) reported that in channel fish ponds in the United States, pond water quality was correlated to stocking and feeding rates. Water quality rapidly deteriorates at feeding rates above 100 - 120 kg/ha per day. In ponds utilized for fertilization and feeding, water quality is related primarily to nutrient input rates. Boyd and Queiroz (1997) stated that part of the nutrients in feeds and fertilizers is recovered in the harvested product, but the remaining nutrients enter the pond ecosystem as inorganic nitrogen, phosphorus, and carbon, dissolved and particulate organic matter. Therefore, relatively small percentages of nitrogen, phosphorus, and organic carbon are recovered in the harvested product. Consequently, the concentrations of nutrients and organic matter in the pond waters and the amount of organic matter settling onto bottoms increase as fertilization and feeding rates increase.

High quality feeds improve feed conversion ratios and reduce quantities of metabolic wastes and uneaten feed (Schwartz and Boyd 1996). Conservative feeding practices, and lower stocking rates also reduces feed inputs and improves feed conversion ratios (Boyd et al. 2000). Feeds are the ultimate source of organic matter pollution in catfish pond effluents (Boyd et al. 2000). The main types of wastes in aquaculture are residual feed particles, fecal matter, and metabolic by-products. Inefficient feed conversion results in poorer quality effluents and also decreases the concentrations of dissolved oxygen as shown in Figure 10. In a study by Filbrun and Culver (2013), dissolved oxygen levels in the ponds were increased by decreasing the feeding rates. The nitrogen in uneaten feed is transformed to ammonia by bacteria. Ammonia nitrogen tends to increase as feed application to a pond increases, and concentrations above 2 mg/L can be very harmful to aquaculture species at high pH (Gross et al. 1999). Ammonia is also added to ponds through fish excretions.

Cripps (1995) stated that it is likely that ponds containing specific sized particles would have elevated nutrient concentrations, resulting from their origin in the diet. Abou et al. (2012) demonstrated that using fern (*Azolla spp.*) as a fish meal substitute for Nile Tilapia had tremendously limited phosphorous loss in the effluent and is considered environment friendly. Coloso et al. (2001) found that soluble phosphorus discharge in effluent water can be reduced in fish fed diets that contained little or no fishmeal, or in diets that were supplemented with a low level of dietary phosphorus. In their rainbow trout study, the dietary combination of low phosphorus and high vitamin D3 decreased soluble and fecal phosphorus levels in the effluents, indicating a strategy whereby effluent phosphorus concentrations can be reduced

1.03% phosphorus. They observed that low phosphorus diets did not decrease phytoplankton productivity or improve effluent quality. However, they suggested the use of low phosphorus diets in order to reduce the phosphorus load to bottom soils and to conserve the soils' ability

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

35

Rangen Inc. (2013, Buhl, ID) provides important feeding tips of some of the commercially important aquaculture species. The tips that are species-specific would also minimize envi‐ ronmental impacts. Although recommended feeding practices differ by species, there are several common tips relevant to all species, including: 1) feeds should be broadcast well to allow all the fish to feed in the pond and minimize feed waste, 2) overfeeding should be avoided all costs to prevent from effluent pollution and gill damages, 3) feeding should be adjusted based on the percent body weight, 4) feed sizes should be adjusted as fish grows, 5) select the right feeding method for the species of interest, 6) feeding should be ceased before handling and shipping, 7) good record keeping is necessary to monitor fish growth and make the necessary adjustments, and 8) good storage and feeding management and feeding technique sanitation should be followed to avoid cross contamination and feed quality issues. In the last few decades, most fish farming has advanced from extensive rearing with few fish, to intensive rearing of high density populations in ponds and raceways. Cost effective good quality fish meals, proper feeding protocol, optimum growth and survival rates are the important goals

While many practices in aquaculture/mariculture (e.g., destruction of mangroves) have been criticized in years past for potential deleterious effects on the environment, the extent of any long term destruction due to aquaculture still remains debatable (Boyd and Schmittou 1990). Nevertheless in the United States and internationally, the most important environmental concern facing the aquaculture industry is the disposal of nutrient rich effluent water produced during the culture of aquatic animals (Goldburg and Triplett 1997; Frankic and Hershner 2003). Therefore, as aquaculture moves toward trying to feed the world, there is an inherent need to be stewards of the land, to protect, preserve and maintain conditions favorable to sustainability (Costa-Pierce 2002; United Nations FAO 2009). Recirculating aquaculture and its associated technology has largely developed out of concerns over water conservation and reducing environmental impacts (Martins et al. 2010). Besides growing fish, the purpose of a recirculating aquaculture system is to collect, concentrate, and process animal wastes rather than discharging wastes directly to the environment. Interestingly, an efficient recirculating aquaculture system is designed to reuse 90-99% of the water initially put into the system, while producing only a very small amount of waste or effluent (Chen et al. 2002, Hollingsworth et

In their simplest form recirculating aquaculture systems (RAS) are similar to a home aquarium. Both a home aquarium and RAS have many of the same components including a tank or tanks, a pump to move water, some sort of filtration system, lighting, a heater or chiller, and fish. Also like a home aquarium, the RAS environment is very controlled to include lighting and room temperature good for the species of interest being cultured and other conditions in the

to adsorb phosphorus.

of any fish farm operation.

al. 2006; Badiola et al. 2012).

**3.7. Recirculating aquaculture and aquaponics**

**Figure 10.** Effect of feeding rate on dissolved oxygen concentrations and Secchi disc visibilities at dawn (Boyd 2001).

by regulation of phosphorus metabolism. Increasing bioavailability of phosphorus will eliminate excess phosphorus in the effluent water.

According to Boyd and Queiroz (1997), increasing stocking density and feeding rates above assimilation capacity of pond water can harm the aquaculture pond in the long run. Heavy circulation, aeration, fish respiration and activities, plant abundance, feeding, fertilization, and stocking density in the ponds induced increases in concentrations of potential pollutants, which then require increased treatment efforts to reduce.

Nutrient manipulations were evaluated to promote more desirable phytoplankton commun‐ ities by eliminating blue-green algae (Wilson et al. 2002). These methods include manipulating the ratio of nitrogen to phosphorus in the water, reducing the availability of phosphorus in bottom muds, enhancing the availability of inorganic carbon, increasing levels of salinity and potassium, and manipulating trace metal availability. Studies showed that various manipu‐ lations of waterborne plant nutrients have little promise for controlling phytoplankton community composition in catfish ponds with high feeding rates. Gross et al. (1999) found that the differences in phosphorus input among three feeds, containing 28, 32, and 36% crude protein, did not affect phosphorus concentrations in the effluents because most of the phos‐ phorus from feed and fish excrement is absorbed by the soil. Gross et al. (1998) studied the phosphorus budgets for channel catfish ponds receiving one of five diets ranging from 0.60 to 1.03% phosphorus. They observed that low phosphorus diets did not decrease phytoplankton productivity or improve effluent quality. However, they suggested the use of low phosphorus diets in order to reduce the phosphorus load to bottom soils and to conserve the soils' ability to adsorb phosphorus.

Rangen Inc. (2013, Buhl, ID) provides important feeding tips of some of the commercially important aquaculture species. The tips that are species-specific would also minimize envi‐ ronmental impacts. Although recommended feeding practices differ by species, there are several common tips relevant to all species, including: 1) feeds should be broadcast well to allow all the fish to feed in the pond and minimize feed waste, 2) overfeeding should be avoided all costs to prevent from effluent pollution and gill damages, 3) feeding should be adjusted based on the percent body weight, 4) feed sizes should be adjusted as fish grows, 5) select the right feeding method for the species of interest, 6) feeding should be ceased before handling and shipping, 7) good record keeping is necessary to monitor fish growth and make the necessary adjustments, and 8) good storage and feeding management and feeding technique sanitation should be followed to avoid cross contamination and feed quality issues. In the last few decades, most fish farming has advanced from extensive rearing with few fish, to intensive rearing of high density populations in ponds and raceways. Cost effective good quality fish meals, proper feeding protocol, optimum growth and survival rates are the important goals of any fish farm operation.

#### **3.7. Recirculating aquaculture and aquaponics**

by regulation of phosphorus metabolism. Increasing bioavailability of phosphorus will

**Figure 10.** Effect of feeding rate on dissolved oxygen concentrations and Secchi disc visibilities at dawn (Boyd 2001).

According to Boyd and Queiroz (1997), increasing stocking density and feeding rates above assimilation capacity of pond water can harm the aquaculture pond in the long run. Heavy circulation, aeration, fish respiration and activities, plant abundance, feeding, fertilization, and stocking density in the ponds induced increases in concentrations of potential pollutants,

Nutrient manipulations were evaluated to promote more desirable phytoplankton commun‐ ities by eliminating blue-green algae (Wilson et al. 2002). These methods include manipulating the ratio of nitrogen to phosphorus in the water, reducing the availability of phosphorus in bottom muds, enhancing the availability of inorganic carbon, increasing levels of salinity and potassium, and manipulating trace metal availability. Studies showed that various manipu‐ lations of waterborne plant nutrients have little promise for controlling phytoplankton community composition in catfish ponds with high feeding rates. Gross et al. (1999) found that the differences in phosphorus input among three feeds, containing 28, 32, and 36% crude protein, did not affect phosphorus concentrations in the effluents because most of the phos‐ phorus from feed and fish excrement is absorbed by the soil. Gross et al. (1998) studied the phosphorus budgets for channel catfish ponds receiving one of five diets ranging from 0.60 to

eliminate excess phosphorus in the effluent water.

34 Sustainable Aquaculture Techniques

which then require increased treatment efforts to reduce.

While many practices in aquaculture/mariculture (e.g., destruction of mangroves) have been criticized in years past for potential deleterious effects on the environment, the extent of any long term destruction due to aquaculture still remains debatable (Boyd and Schmittou 1990). Nevertheless in the United States and internationally, the most important environmental concern facing the aquaculture industry is the disposal of nutrient rich effluent water produced during the culture of aquatic animals (Goldburg and Triplett 1997; Frankic and Hershner 2003). Therefore, as aquaculture moves toward trying to feed the world, there is an inherent need to be stewards of the land, to protect, preserve and maintain conditions favorable to sustainability (Costa-Pierce 2002; United Nations FAO 2009). Recirculating aquaculture and its associated technology has largely developed out of concerns over water conservation and reducing environmental impacts (Martins et al. 2010). Besides growing fish, the purpose of a recirculating aquaculture system is to collect, concentrate, and process animal wastes rather than discharging wastes directly to the environment. Interestingly, an efficient recirculating aquaculture system is designed to reuse 90-99% of the water initially put into the system, while producing only a very small amount of waste or effluent (Chen et al. 2002, Hollingsworth et al. 2006; Badiola et al. 2012).

In their simplest form recirculating aquaculture systems (RAS) are similar to a home aquarium. Both a home aquarium and RAS have many of the same components including a tank or tanks, a pump to move water, some sort of filtration system, lighting, a heater or chiller, and fish. Also like a home aquarium, the RAS environment is very controlled to include lighting and room temperature good for the species of interest being cultured and other conditions in the facility. Fish are fed, water is added or taken out periodically, and water quality is monitored constantly and is often controlled through the addition of certain chemicals such as sodium bicarbonate. Unlike a home aquarium and relative to other types of aquaculture, RAS is very capital and energy intensive. It must rely on economic productivity for profitability, may require several additional components for processing water, and requires above average experienced personnel for successful management (Timmons et al. 2001; Timmons and Ebeling 2007; Ebeling and Timmons 2012).

and have been suggested on an international level, but wetland ponds have a limited lifetime and this is often a costly option. Another option for RAS effluent management that has been explored in other geographical areas is land application. Valencia et al. (2001) conducted a study to determine if effluent from a tilapia tank system could be used to replace nitrogen on guineagrass (*Panicum maximum*) managed as hay in a water limited area of the United States Virgin Islands. Interestingly, their results indicated that the tilapia tank system effluent could in fact serve as an adequate nitrogen and water replacement for guineagrass pasture, and hay production without changes in soil pH and phosphorous. Moreover, because this study used grass rather than row crops, it acts as a sink (similar to a wetland) with less risk of nutrient loss or leaching to the environment. The use of grass crops for assessing environmentally friendly ways to manage RAS effluent is but one step in the many ways research can explore

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

37

Overwhelmingly due to environmental concerns, but also to increase production efficiency, in recent years Best Management Practices have evolved across a number of industries from car manufacturing to food processing. Plain and simple, BMP's make sense and are a way of reducing multiple levels of risk. Within aquaculture, several entities including the Global Aquaculture Alliance (GAA) have created their own version of BMP's or Best Aquaculture Practices (BAP's). According to the GAA (2011), BAP's address environmental and social responsibility, animal welfare, food safety and traceability all on a national and international level. Through their BAP's the GAA further provides a certification program where they define elements of responsible aquaculture and evaluate adherence to these practices for each type of facility whether it be a hatchery, feed mill, farm or processing plant (www.gaalliance.org).

There are a number of BMP's that recirculating aquaculture system managers can use to make their facilities more environmentally friendly. Best management practices for recirculating aquaculture systems range in scope from choosing the right manager for the facility to using the most efficient types of filtration. Ensuring the use of high quality feeds with fewer fines will reduce nutrient levels and feed conversion ratios. Incorporating hybrid technology such as bioflocs which help to reduce feed costs and enhancing energy efficiency by using less and reusing energy where possible will all help the economic and environmental sustainability of recirculating aquaculture systems (Miller and Semmens 2002; Summerfelt and Vinci 2008; Hanna et al. 2010; Martins et al. 2010; Badiola et al. 2012). Summerfelt and Vinci (2008) have presented a thorough explanation of RAS BMP's beginning with site selection, working through solids storage, treatment and disposal, and complete facility operation and mainte‐ nance. Interestingly, Summerfelt and Vinci (2008) consider the point source waste stream to

Ultimately, for RAS to truly be environmentally friendly BMP's must be incorporated into their everyday function. Agriculture and its water counterpart aquaculture have been scrutinized due to various practices that have been employed over the many years of operation. In recent years, the colloquial buzzword has been "sustainable". You can't speak to anyone, go any‐ where, or do anything anymore in any area of agriculture and natural resources without the mention of "sustainable". But with regard to agriculture what does sustainable mean? According to the United States Department of Agriculture, National Institute of Food and

be the major facility level environmental issue (see also Hollingworth 2006).

repurposing and/or disposal of RAS effluent on and international level.

With proper site selection, an advanced filtration capability, reduced water use and their small footprint, a recirculating aquaculture system lends itself to being a relatively environmentally friendly (Summerfelt and Vinci 2008; Ebeling and Timmons 2012, Losordo et al. 2013). Recirculating aquaculture systems do not rely on surface water for replenishment and with their ability to be located in close proximity to markets, they may be advantageous over other aquaculture systems (i.e., ponds, net pens, open ocean aquaculture) especially when compar‐ ing carbon footprint associated with food transport emissions (Martins et al. 2010). However, even with the positive attributes of a RAS, there is potential for it to be harmful to the envi‐ ronment and be considered unsustainable. Recirculating aquaculture systems are often described as the most effective way to grow large quantities of fish in a limited space. Fur‐ thermore, with their ability to control the environment they have the ability to grow fish year round (Hollingsworth et al. 2006; Ebeling and Timmons, 2012).

On a large production scale, recirculating aquaculture systems tend to be energy intensive and could be considered similar to other confined animal feeding operations, or CAFO's. In fact, under the 2004 United States federal aquaculture effluent limitation guidelines, recirculating aquaculture systems with an annual production exceeding 45,454 kg (100,000 lbs.) are classified as a concentrated aquatic animal production (CAAP) facility. Operations this large in scale are required to obtain a National Pollution Discharge Elimination System (NPDES) permit before discharging wastes into waters of the United States. Fortunately, the majority of recirculating aquaculture system operations in the United States choose alternatives to discharging effluent into natural waters, and instead either discharge into public municipal treatment works, collect the waste and apply it to nutrient deficient crops on land, or utilize treatment wetlands for processing effluent (Miller and Semmens 2002; Hollingsworth 2006; Summerfelt and Vinci 2008). A NPDES permit can be granted when the development of a facility specific Best Management Practices (BMP) plan specifies how discharges will be reduced of potential pollutants (Summerfelt and Vinci 2008).

The United States has a great deal of infrastructure that allows for regulation of discharge and more specifically, discharge into municipal treatment works, unfortunately the remainder of the world does not have this benefit. If recirculating aquaculture is to be adopted worldwide to raise fish in an environmentally and sustainable fashion, specific infrastructure is required. As previously mentioned, there is a plethora of literature available that describes RAS components and their efficiency at waste removal for large-scale fish culture. However, there is little information on dealing with the actual collected and concentrated solids that are generated from a large scale RAS. This is especially true when looking at recirculating aquaculture on an international capacity. Wetland ponds are often used in the United States and have been suggested on an international level, but wetland ponds have a limited lifetime and this is often a costly option. Another option for RAS effluent management that has been explored in other geographical areas is land application. Valencia et al. (2001) conducted a study to determine if effluent from a tilapia tank system could be used to replace nitrogen on guineagrass (*Panicum maximum*) managed as hay in a water limited area of the United States Virgin Islands. Interestingly, their results indicated that the tilapia tank system effluent could in fact serve as an adequate nitrogen and water replacement for guineagrass pasture, and hay production without changes in soil pH and phosphorous. Moreover, because this study used grass rather than row crops, it acts as a sink (similar to a wetland) with less risk of nutrient loss or leaching to the environment. The use of grass crops for assessing environmentally friendly ways to manage RAS effluent is but one step in the many ways research can explore repurposing and/or disposal of RAS effluent on and international level.

facility. Fish are fed, water is added or taken out periodically, and water quality is monitored constantly and is often controlled through the addition of certain chemicals such as sodium bicarbonate. Unlike a home aquarium and relative to other types of aquaculture, RAS is very capital and energy intensive. It must rely on economic productivity for profitability, may require several additional components for processing water, and requires above average experienced personnel for successful management (Timmons et al. 2001; Timmons and Ebeling

With proper site selection, an advanced filtration capability, reduced water use and their small footprint, a recirculating aquaculture system lends itself to being a relatively environmentally friendly (Summerfelt and Vinci 2008; Ebeling and Timmons 2012, Losordo et al. 2013). Recirculating aquaculture systems do not rely on surface water for replenishment and with their ability to be located in close proximity to markets, they may be advantageous over other aquaculture systems (i.e., ponds, net pens, open ocean aquaculture) especially when compar‐ ing carbon footprint associated with food transport emissions (Martins et al. 2010). However, even with the positive attributes of a RAS, there is potential for it to be harmful to the envi‐ ronment and be considered unsustainable. Recirculating aquaculture systems are often described as the most effective way to grow large quantities of fish in a limited space. Fur‐ thermore, with their ability to control the environment they have the ability to grow fish year

On a large production scale, recirculating aquaculture systems tend to be energy intensive and could be considered similar to other confined animal feeding operations, or CAFO's. In fact, under the 2004 United States federal aquaculture effluent limitation guidelines, recirculating aquaculture systems with an annual production exceeding 45,454 kg (100,000 lbs.) are classified as a concentrated aquatic animal production (CAAP) facility. Operations this large in scale are required to obtain a National Pollution Discharge Elimination System (NPDES) permit before discharging wastes into waters of the United States. Fortunately, the majority of recirculating aquaculture system operations in the United States choose alternatives to discharging effluent into natural waters, and instead either discharge into public municipal treatment works, collect the waste and apply it to nutrient deficient crops on land, or utilize treatment wetlands for processing effluent (Miller and Semmens 2002; Hollingsworth 2006; Summerfelt and Vinci 2008). A NPDES permit can be granted when the development of a facility specific Best Management Practices (BMP) plan specifies how discharges will be reduced of potential

The United States has a great deal of infrastructure that allows for regulation of discharge and more specifically, discharge into municipal treatment works, unfortunately the remainder of the world does not have this benefit. If recirculating aquaculture is to be adopted worldwide to raise fish in an environmentally and sustainable fashion, specific infrastructure is required. As previously mentioned, there is a plethora of literature available that describes RAS components and their efficiency at waste removal for large-scale fish culture. However, there is little information on dealing with the actual collected and concentrated solids that are generated from a large scale RAS. This is especially true when looking at recirculating aquaculture on an international capacity. Wetland ponds are often used in the United States

round (Hollingsworth et al. 2006; Ebeling and Timmons, 2012).

2007; Ebeling and Timmons 2012).

36 Sustainable Aquaculture Techniques

pollutants (Summerfelt and Vinci 2008).

Overwhelmingly due to environmental concerns, but also to increase production efficiency, in recent years Best Management Practices have evolved across a number of industries from car manufacturing to food processing. Plain and simple, BMP's make sense and are a way of reducing multiple levels of risk. Within aquaculture, several entities including the Global Aquaculture Alliance (GAA) have created their own version of BMP's or Best Aquaculture Practices (BAP's). According to the GAA (2011), BAP's address environmental and social responsibility, animal welfare, food safety and traceability all on a national and international level. Through their BAP's the GAA further provides a certification program where they define elements of responsible aquaculture and evaluate adherence to these practices for each type of facility whether it be a hatchery, feed mill, farm or processing plant (www.gaalliance.org).

There are a number of BMP's that recirculating aquaculture system managers can use to make their facilities more environmentally friendly. Best management practices for recirculating aquaculture systems range in scope from choosing the right manager for the facility to using the most efficient types of filtration. Ensuring the use of high quality feeds with fewer fines will reduce nutrient levels and feed conversion ratios. Incorporating hybrid technology such as bioflocs which help to reduce feed costs and enhancing energy efficiency by using less and reusing energy where possible will all help the economic and environmental sustainability of recirculating aquaculture systems (Miller and Semmens 2002; Summerfelt and Vinci 2008; Hanna et al. 2010; Martins et al. 2010; Badiola et al. 2012). Summerfelt and Vinci (2008) have presented a thorough explanation of RAS BMP's beginning with site selection, working through solids storage, treatment and disposal, and complete facility operation and mainte‐ nance. Interestingly, Summerfelt and Vinci (2008) consider the point source waste stream to be the major facility level environmental issue (see also Hollingworth 2006).

Ultimately, for RAS to truly be environmentally friendly BMP's must be incorporated into their everyday function. Agriculture and its water counterpart aquaculture have been scrutinized due to various practices that have been employed over the many years of operation. In recent years, the colloquial buzzword has been "sustainable". You can't speak to anyone, go any‐ where, or do anything anymore in any area of agriculture and natural resources without the mention of "sustainable". But with regard to agriculture what does sustainable mean? According to the United States Department of Agriculture, National Institute of Food and Agriculture (USDA-NIFA 2013), sustainable agriculture is an integrated system of plant and animal production practices having site specific application that over the long term will be able to (1) satisfy human food and fiber needs, (2) enhance environmental quality and the natural resource base upon which the agriculture economy depends, (3) it should further make the most efficient use of nonrenewable resources and on-farm resources and integrate, where appropriate, natural biological cycles and controls, (4) sustain the economic viability of farm operations, and (5) enhance the quality of life for farmers and society as a whole.

certification. While there are other private agencies worldwide that provide an organic certification for fish, the stringent guidelines provided by the USDA elevate this title to a higher level. Fortunately, in recent years there has been an ever increasing attempt at creating sustainable 'fishmeal reduced' and 'fishmeal free' diets for a growing number of fish species, especially with regard to highly prized carnivorous, saltwater species (see also Rhodes et al. 2013; Watson et al. 2013). The continued development of these diets may ultimately lead to a

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

39

While aquaponics systems are perhaps the most environmentally sustainable form of RAS to date, it does have drawbacks. Like any aquaculture venture, costs associated with initial investment, system components, their availability, construction and operation can have a significant impact on the economic sustainability of a system (Rackocy 2012). Hanna et al. (2010), for example have shown how different managers' management practices can affect the operation of identical RAS. It therefore becomes extremely important for aquaponics/RAS managers to follow Best management practices that will allow for a system to be profitable and sustainable. Best management practices for recirculating aquaculture and aquaponics systems have been described extensively in the literature (Chen et al. 2002; Summerfelt and Vinci 2008,). However, as we move toward trying to feed the world and keep RAS as envi‐ ronmentally friendly as possible, there are many important factors in operating a RAS. With regard to profitability and sustainability, perhaps offsetting initial investment, component and/or construction costs can be achieved by targeting highly sought after plant and fish species. Again, as fish meal free fish diets are developed for highly sought after marine species this reality becomes closer. One farmer at a recent national aquaponics conference suggested dealing directly with restaurants and "setting your price" rather than letting someone tell you how much something is worth (personal communication, National Aquaponics Conference, Tucson, AZ 2013). Similarly, it may also be advantageous for the owner/operator of a small scale RAS or aquaponics system to maximize profit and sustainability through raising high dollar plant and fish species as long as they have an established market (Frankic and Hershner 2003). With the recent surge in "farm to table" interest, it is very apparent that this concept can

Ultimately, in trying to keep up with the worlds' population growth and food needs, RAS and aquaponics will continue to play a major role. Costa-Pierce (2002) and others suggest there has to be a behavioral shift in humans rather than technology in order for aquaculture to become truly sustainable. Many individuals only seem to see aquaculture in the sense that we need to produce as much fish as possible in as small an area as possible, however perhaps instead of trying to create RAS that are on the same level as a CAFO we instead look to systems that are sized according to the supporting the local community (Frankic and Hershner 2003). Again, one of the major advantages to a RAS is its' small footprint. By building a RAS with community size in mind it can be sized to feed the community on an ongoing basis. Having the RAS near or within a community would also reduce the carbon footprint by a reduction in fossil fuels needed for shipping etc. Figures 11 and 12 show a recirculating aquaculture system and an airlift aquaponics raft system in the Aquaculture Research and Demonstration Facility at

USDA organic certification for United States aquaculture.

be profitable and environmentally friendly in the United States.

Delaware State University, Dover, DE, USA.

Aquaponics developed from hydroponics, or the culture of plants with little to no soil. In hydroponics, plants are raised in some sort of structure where the roots are submerged in either water or some type of media base where they are fed via a solution containing all the nutrients (fertilizer, trace minerals, etc.) that they need (McMurtry et al. 1990). Aquaponics, however are virtually the same as any other RAS, except that they use the metabolic byproducts of one crop (i.e., finfish) to produce a secondary crop (plants), thereby adding value by producing two crops instead of one (Rakocy 2012). In turn, the plants in an aquaponics system filter potentially lethal nutrients (nitrite, nitrate) from the water and return it back to the fish culture tank (Losordo et al. 2013; Rakocy et al. 1992). With the mention of sustainability, increasing pressure from environmental groups, governmental regulations and the fact that aquaculture continues to play an ever increasing role in supplying the worlds' food supply it is not surprising that interest in aquaponics has begun to take a foothold with regard to RAS, especially in urban area of the US.

A typical aquaponics system is set up so that water flows from the fish culture tanks (Figure 12a) to a settling chamber, or clarifier where solids are removed from the waste stream, water then enters a biofilter where ammonia in the water from the fish and excess feed is converted to nitrite nitrogen and then nitrate nitrogen. Water then exits the biofilter and proceeds toward the plant component where there may or may not be several other components included (i.e., base addition, degasser). The plant component is either a raceway with floating rafts, or could be what is called an NFT (nutrient film technique). In general, this is where the plants feed off of the nitrate nitrogen before the water returns to the fish culture tank relatively free of nitrogen. In this system the plants receive trace minerals via the fish food; however, there is often the need to supplement with things like iron, calcium, and potassium. (For a complete description of an aquaponics system, refer to Rakocy 2012).

Aquaponics is beneficial for a number of other reasons including that the cycling of the fish water to the plant component in an aquaponics system reduces the amount of concentrated discharge coming from this system relative to other RAS. Also important is that while fertilizers, herbicides, and pesticides may be utilized in or around greenhouses housing hydroponics, these are highly discouraged around aquaponics systems because of the deleterious effects they would have on the fish. Similarly, because an aquaponics system is a form of RAS, the use of antibiotics is discouraged within the system so as not to kill beneficial bacteria that are involved in the natural nitrification process. For these and other reasons, aquaponics systems are considered to be broaching the realm of organic. Organic farming is often considered to be environmentally friendly and sustainable. Unfortunately, the United States Department of Agriculture (USDA) has yet to provide aquaculture with an organic certification. While there are other private agencies worldwide that provide an organic certification for fish, the stringent guidelines provided by the USDA elevate this title to a higher level. Fortunately, in recent years there has been an ever increasing attempt at creating sustainable 'fishmeal reduced' and 'fishmeal free' diets for a growing number of fish species, especially with regard to highly prized carnivorous, saltwater species (see also Rhodes et al. 2013; Watson et al. 2013). The continued development of these diets may ultimately lead to a USDA organic certification for United States aquaculture.

Agriculture (USDA-NIFA 2013), sustainable agriculture is an integrated system of plant and animal production practices having site specific application that over the long term will be able to (1) satisfy human food and fiber needs, (2) enhance environmental quality and the natural resource base upon which the agriculture economy depends, (3) it should further make the most efficient use of nonrenewable resources and on-farm resources and integrate, where appropriate, natural biological cycles and controls, (4) sustain the economic viability of farm

Aquaponics developed from hydroponics, or the culture of plants with little to no soil. In hydroponics, plants are raised in some sort of structure where the roots are submerged in either water or some type of media base where they are fed via a solution containing all the nutrients (fertilizer, trace minerals, etc.) that they need (McMurtry et al. 1990). Aquaponics, however are virtually the same as any other RAS, except that they use the metabolic byproducts of one crop (i.e., finfish) to produce a secondary crop (plants), thereby adding value by producing two crops instead of one (Rakocy 2012). In turn, the plants in an aquaponics system filter potentially lethal nutrients (nitrite, nitrate) from the water and return it back to the fish culture tank (Losordo et al. 2013; Rakocy et al. 1992). With the mention of sustainability, increasing pressure from environmental groups, governmental regulations and the fact that aquaculture continues to play an ever increasing role in supplying the worlds' food supply it is not surprising that interest in aquaponics has begun to take a foothold with regard to RAS, especially in urban

A typical aquaponics system is set up so that water flows from the fish culture tanks (Figure 12a) to a settling chamber, or clarifier where solids are removed from the waste stream, water then enters a biofilter where ammonia in the water from the fish and excess feed is converted to nitrite nitrogen and then nitrate nitrogen. Water then exits the biofilter and proceeds toward the plant component where there may or may not be several other components included (i.e., base addition, degasser). The plant component is either a raceway with floating rafts, or could be what is called an NFT (nutrient film technique). In general, this is where the plants feed off of the nitrate nitrogen before the water returns to the fish culture tank relatively free of nitrogen. In this system the plants receive trace minerals via the fish food; however, there is often the need to supplement with things like iron, calcium, and potassium. (For a complete

Aquaponics is beneficial for a number of other reasons including that the cycling of the fish water to the plant component in an aquaponics system reduces the amount of concentrated discharge coming from this system relative to other RAS. Also important is that while fertilizers, herbicides, and pesticides may be utilized in or around greenhouses housing hydroponics, these are highly discouraged around aquaponics systems because of the deleterious effects they would have on the fish. Similarly, because an aquaponics system is a form of RAS, the use of antibiotics is discouraged within the system so as not to kill beneficial bacteria that are involved in the natural nitrification process. For these and other reasons, aquaponics systems are considered to be broaching the realm of organic. Organic farming is often considered to be environmentally friendly and sustainable. Unfortunately, the United States Department of Agriculture (USDA) has yet to provide aquaculture with an organic

description of an aquaponics system, refer to Rakocy 2012).

operations, and (5) enhance the quality of life for farmers and society as a whole.

area of the US.

38 Sustainable Aquaculture Techniques

While aquaponics systems are perhaps the most environmentally sustainable form of RAS to date, it does have drawbacks. Like any aquaculture venture, costs associated with initial investment, system components, their availability, construction and operation can have a significant impact on the economic sustainability of a system (Rackocy 2012). Hanna et al. (2010), for example have shown how different managers' management practices can affect the operation of identical RAS. It therefore becomes extremely important for aquaponics/RAS managers to follow Best management practices that will allow for a system to be profitable and sustainable. Best management practices for recirculating aquaculture and aquaponics systems have been described extensively in the literature (Chen et al. 2002; Summerfelt and Vinci 2008,). However, as we move toward trying to feed the world and keep RAS as envi‐ ronmentally friendly as possible, there are many important factors in operating a RAS. With regard to profitability and sustainability, perhaps offsetting initial investment, component and/or construction costs can be achieved by targeting highly sought after plant and fish species. Again, as fish meal free fish diets are developed for highly sought after marine species this reality becomes closer. One farmer at a recent national aquaponics conference suggested dealing directly with restaurants and "setting your price" rather than letting someone tell you how much something is worth (personal communication, National Aquaponics Conference, Tucson, AZ 2013). Similarly, it may also be advantageous for the owner/operator of a small scale RAS or aquaponics system to maximize profit and sustainability through raising high dollar plant and fish species as long as they have an established market (Frankic and Hershner 2003). With the recent surge in "farm to table" interest, it is very apparent that this concept can be profitable and environmentally friendly in the United States.

Ultimately, in trying to keep up with the worlds' population growth and food needs, RAS and aquaponics will continue to play a major role. Costa-Pierce (2002) and others suggest there has to be a behavioral shift in humans rather than technology in order for aquaculture to become truly sustainable. Many individuals only seem to see aquaculture in the sense that we need to produce as much fish as possible in as small an area as possible, however perhaps instead of trying to create RAS that are on the same level as a CAFO we instead look to systems that are sized according to the supporting the local community (Frankic and Hershner 2003). Again, one of the major advantages to a RAS is its' small footprint. By building a RAS with community size in mind it can be sized to feed the community on an ongoing basis. Having the RAS near or within a community would also reduce the carbon footprint by a reduction in fossil fuels needed for shipping etc. Figures 11 and 12 show a recirculating aquaculture system and an airlift aquaponics raft system in the Aquaculture Research and Demonstration Facility at Delaware State University, Dover, DE, USA.

Facility at Delaware State University, Dover, DE, USA.

friendly in the United States.

Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **30**

al. (2010), for example have shown how different managers' management practices can affect the operation of identical RAS. It therefore becomes extremely important for aquaponics/RAS managers to follow Best management practices that will allow for a system to be profitable and sustainable. Best management practices for recirculating aquaculture and aquaponics systems have been described extensively in the literature (Chen et al. 2002; Summerfelt and Vinci 2008,). However, as we move toward trying to feed the world and keep RAS as environmentally friendly as possible, there are many important factors in operating a RAS. With regard to profitability and sustainability, perhaps offsetting initial investment, component and/or construction costs can be achieved by targeting highly sought after plant and fish species. Again, as fish meal free fish diets are developed for highly sought after marine species this reality becomes closer. One farmer at a recent national aquaponics conference suggested dealing directly with restaurants and "setting your price" rather than letting someone tell you how much something is worth (personal communication, National Aquaponics Conference, Tucson, AZ 2013). Similarly, it may also be advantageous for the owner/operator of a small scale RAS or aquaponics system to maximize profit and sustainability through raising high dollar plant and fish species as long as they have an established market (Frankic and Hershner 2003). With the recent surge in "farm to table" interest, it is very apparent that this concept can be profitable and environmentally

 Ultimately, in trying to keep up with the worlds' population growth and food needs, RAS and aquaponics will continue to play a major role. Costa-Pierce (2002) and others suggest there has to be a behavioral shift in humans rather than technology in order for aquaculture to become truly sustainable. Many individuals only seem to see aquaculture in the sense that we need to produce as much fish as possible in as small an area as possible, however perhaps instead of trying to create RAS that are on the same level as a CAFO we instead look to systems that are sized according to the supporting the local community (Frankic and Hershner 2003). Again, one of the major advantages to a RAS is its' small footprint. By building a

show a recirculating aquaculture system and an airlift aquaponics raft system in the Aquaculture Research and Demonstration

nutrients in effluents to prevent polluting receiving waters. The best methods to prevent soil and water quality problems include selecting a site with appropriate soils and an adequate water supply, and maintaining moderate fish densities and feeding rates (Hargreaves et al. 2003). Secondary management techniques to prevent soil and water quality imbalances include liming, fertilization, and aeration (Boyd 1998). Agricultural irrigation, created wetlands, settling basins, and biological filters are also practical methods for reducing and improving

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

41

the quality of effluent from ponds (Setty 2013; Tucker 2009; Ozbay and Jackson 2006).

meet water quality or resource management goals.

raceways, cages, effluents, safety, and others.

Countries with regulations on farm practices and effluent standards follow guidelines and permit processes. However, countries without aquaculture regulations can also apply BMPs to minimize off-site water pollution and related environmental impacts. The code of conduct and codes of practice become useful tools for the farmers to adopt and serve as the guiding tool. As described by Boyd (2003) the code of conduct is a system of rules on how aquaculture should be conducted. The guiding principles for responsible aquaculture by the Global Aquaculture Alliance (GAA) serve as the code of conduct. In order to avoid social and environmental problems, codes of practice are used to solve the problems through manage‐ ment activities. Overall the goal of these codes is to minimize, or remove the negative impacts of an aquaculture operation (Boyd 2003). Boyd (2003) describes BMPs as management practices that are the most effective at reducing pollution levels and other environmental impacts which

Although not comprehensive, Boyd (2003) highlights some BMPs for pond aquaculture: a. use stocking and feeding rates that do not exceed the assimilative capacity of ponds; b. avoid overfeeding and apply a strict feeding plan; c. do not use fertilizers unless it is absolutely necessary to promote healthy phytoplankton growth; d. reduce water exchange; e. reuse water as much as possible; f. use a settling basin if available to treat pond effluents before final discharge. Application of these recommendations is based on farm operation and design, species cultured, and culture methods used (Boyd 2003). As Boyd states, selection of BMPs is case specific. One such example includes 10 codes of practice established for responsible shrimp farming by the GAA including mangroves, site evaluation, design and construction, feeds and feed use, shrimp health management, effluents, solids waste and few others. Although one BMP may be sufficient for one small farm, multiple BMPs may be necessary for others. ALEARN (www.alearn.info) listed over 20 best management practices for ponds,

Shrimp aquaculture is a rapidly expanding field and is being closely scrutinized by environ‐ mentalists and government agencies. Due to the need for saltwater, discharge from shrimp facilities often flows into fragile coastal ecosystems. Problems associated with discharge include eutrophication due to nitrogen loading and detritus, low dissolved oxygen levels, sedimentation, along with other problems (Villalon 1991). These problems however are not without solutions; treatment of effluent should be regarded as an opportunity rather than just an obligation. Our goal is to provide broader perspectives on how basic principles and natural solutions can make shrimp aquaculture longer lived and be more sustainable. We discuss some of the management strategies current shrimp aquaculture operations along with best man‐

agement practices for reducing potential impacts of shrimp aquaculture.

 **Figure 11. a.** An indoor multi-tank recirculating aquaculture system (RAS); **b.** A parabolic screen filter in a RAS (Photo courtesy of Blank). **Figure 11.** a. An indoor multi-tank recirculating aquaculture system (RAS); b. A parabolic screen filter in a RAS (Photo courtesy of Blank). Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. <sup>|</sup> **<sup>31</sup>**

 **Figure 12. a.** Construction of an airlift aquaponics system; **b.** Aquaponics raft raceway showing aeration for plant roots; **c.** Planting herbs in a floating Styrofoam sheet (Photos courtesy of Blank). **Figure 12.** a. Construction of an airlift aquaponics system; b. Aquaponics raft raceway showing aeration for plant roots; c. Planting herbs in a floating Styrofoam sheet (Photos courtesy of Blank).

Best Management Practices (BMPs) have been used as an important management tool for various aquaculture

#### **4. Best Management Practices (BMPs) and Sustainable Aquaculture 4. Best Management Practices (BMPs) and sustainable aquaculture**

practices and management may vary based on the species cultured, type of aquaculture practice, location, surrounding habitat, economy and policy conditions of the area. Although there are differences in the application and level of engagement with BMPs, there are common issues through which the application of BMPs can be applied to all. While there are many types of different aquaculture operations, because worldwide ponds are the most prevalent the recommendation and management practices in this chapter will focus on the pond management. BMPs reflect the most technically practical and economically feasible methods to reduce environmental impacts and limit costs at aquaculture facilities. One primary goal is to develop simple effluent treatment systems that reduce organic matter loads, suspended solids, and nutrients in effluents to prevent polluting receiving waters. The best methods to prevent soil and water quality problems include selecting a site with appropriate soils and an adequate water supply, and maintaining moderate fish densities and feeding rates (Hargreaves et al. 2003). Secondary management techniques to prevent soil and water quality imbalances include liming, fertilization, and aeration (Boyd 1998). Agricultural irrigation, created wetlands, Best Management Practices (BMPs) have been used as an important management tool for various aquaculture practices and management may vary based on the species cultured, type of aquaculture practice, location, surrounding habitat, economy and policy conditions of the area. Although there are differences in the application and level of engagement with BMPs, there are common issues through which the application of BMPs can be applied to all. While there are many types of different aquaculture operations, because worldwide ponds are the most prevalent the recommendation and management practices in this section will focus on the pond management.

settling basins, and biological filters are also practical methods for reducing and improving the quality of effluent from ponds (Setty 2013; Tucker 2009; Ozbay and Jackson 2006). Countries with regulations on farm practices and effluent standards follow guidelines and permit processes. However, countries without aquaculture regulations can also apply BMPs to minimize off-site water pollution and related BMPs reflect the most technically practical and economically feasible methods to reduce environmental impacts and limit costs at aquaculture facilities. One primary goal is to develop simple effluent treatment systems that reduce organic matter loads, suspended solids, and

levels and other environmental impacts which meet water quality or resource management goals.

environmental impacts. The code of conduct and codes of practice become useful tools for the farmers to adopt and serve as the guiding tool. As described by Boyd (2003) the code of conduct is a system of rules on how aquaculture should be conducted. The guiding principles for responsible aquaculture by the Global Aquaculture Alliance (GAA) serve as the code of conduct. In order to avoid social and environmental problems, codes of practice are used to solve the problems through management activities. Overall the goal of these codes is to minimize, or remove the negative impacts of an aquaculture operation (Boyd 2003). Boyd (2003) describes BMPs as management practices that are the most effective at reducing pollution

Although not comprehensive, Boyd (2003) highlights some BMPs for pond aquaculture: a. use stocking and feeding rates that do not exceed the assimilative capacity of ponds; b. avoid overfeeding and apply a strict feeding plan; c. do not use fertilizers unless it is absolutely necessary to promote healthy phytoplankton growth; d. reduce water exchange; e. reuse water as much as possible; f. use a settling basin if available to treat pond effluents before final discharge. Application of these recommendations is based on farm operation and design, species cultured, and culture methods used (Boyd 2003). As Boyd states, selection of BMPs is case specific. One such example includes 10 codes of practice established for responsible shrimp farming by the GAA including mangroves, site evaluation, design and construction, feeds and feed use, shrimp health management, effluents, solids waste and few others. Although one BMP may be sufficient for one small farm, multiple BMPs may be necessary for others. ALEARN (www.alearn.info) listed over 20 best management practices for ponds, raceways, nutrients in effluents to prevent polluting receiving waters. The best methods to prevent soil and water quality problems include selecting a site with appropriate soils and an adequate water supply, and maintaining moderate fish densities and feeding rates (Hargreaves et al. 2003). Secondary management techniques to prevent soil and water quality imbalances include liming, fertilization, and aeration (Boyd 1998). Agricultural irrigation, created wetlands, settling basins, and biological filters are also practical methods for reducing and improving the quality of effluent from ponds (Setty 2013; Tucker 2009; Ozbay and Jackson 2006).

Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **30**

al. (2010), for example have shown how different managers' management practices can affect the operation of identical RAS. It therefore becomes extremely important for aquaponics/RAS managers to follow Best management practices that will allow for a system to be profitable and sustainable. Best management practices for recirculating aquaculture and aquaponics systems have been described extensively in the literature (Chen et al. 2002; Summerfelt and Vinci 2008,). However, as we move toward trying to feed the world and keep RAS as environmentally friendly as possible, there are many important factors in operating a RAS. With regard to profitability and sustainability, perhaps offsetting initial investment, component and/or construction costs can be achieved by targeting highly sought after plant and fish species. Again, as fish meal free fish diets are developed for highly sought after marine species this reality becomes closer. One farmer at a recent national aquaponics conference suggested dealing directly with restaurants and "setting your price" rather than letting someone tell you how much something is worth (personal communication, National Aquaponics Conference, Tucson, AZ 2013). Similarly, it may also be advantageous for the owner/operator of a small scale RAS or aquaponics system to maximize profit and sustainability through raising high dollar plant and fish species as long as they have an established market (Frankic and Hershner 2003). With the recent surge in "farm to table" interest, it is very apparent that this concept can be profitable and environmentally

 Ultimately, in trying to keep up with the worlds' population growth and food needs, RAS and aquaponics will continue to play a major role. Costa-Pierce (2002) and others suggest there has to be a behavioral shift in humans rather than technology in order for aquaculture to become truly sustainable. Many individuals only seem to see aquaculture in the sense that we need to produce as much fish as possible in as small an area as possible, however perhaps instead of trying to create RAS that are on the same level as a CAFO we instead look to systems that are sized according to the supporting the local community (Frankic and Hershner 2003). Again, one of the major advantages to a RAS is its' small footprint. By building a RAS with community size in mind it can be sized to feed the community on an ongoing basis. Having the RAS near or within a community would also reduce the carbon footprint by a reduction fossil fuels needed for shipping etc. Figures 11 and 12 show a recirculating aquaculture system and an airlift aquaponics raft system in the Aquaculture Research and Demonstration

**a b**

 **Figure 11. a.** An indoor multi-tank recirculating aquaculture system (RAS); **b.** A parabolic screen filter in a RAS (Photo

courtesy of Blank). Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. <sup>|</sup> **<sup>31</sup>**

 **Figure 12. a.** Construction of an airlift aquaponics system; **b.** Aquaponics raft raceway showing aeration for plant roots; **c.**

**Figure 12.** a. Construction of an airlift aquaponics system; b. Aquaponics raft raceway showing aeration for plant

Best Management Practices (BMPs) have been used as an important management tool for various aquaculture practices and management may vary based on the species cultured, type of aquaculture practice, location, surrounding habitat, economy and policy conditions of the area. Although there are differences in the application and level of engagement with BMPs, there are common issues through which the application of BMPs can be applied to all. While there are many types of different aquaculture operations, because worldwide ponds are the most prevalent the recommendation and management practices in this section will focus on

BMPs reflect the most technically practical and economically feasible methods to reduce environmental impacts and limit costs at aquaculture facilities. One primary goal is to develop simple effluent treatment systems that reduce organic matter loads, suspended solids, and

**4. Best Management Practices (BMPs) and sustainable aquaculture**

Best Management Practices (BMPs) have been used as an important management tool for various aquaculture practices and management may vary based on the species cultured, type of aquaculture practice, location, surrounding habitat, economy and policy conditions of the area. Although there are differences in the application and level of engagement with BMPs, there are common issues through which the application of BMPs can be applied to all. While there are many types of different aquaculture operations, because worldwide ponds are the most prevalent the recommendation and management

BMPs reflect the most technically practical and economically feasible methods to reduce environmental impacts and limit costs at aquaculture facilities. One primary goal is to develop simple effluent treatment systems that reduce organic matter loads, suspended solids, and nutrients in effluents to prevent polluting receiving waters. The best methods to prevent soil and water quality problems include selecting a site with appropriate soils and an adequate water supply, and maintaining moderate fish densities and feeding rates (Hargreaves et al. 2003). Secondary management techniques to prevent soil and water quality imbalances include liming, fertilization, and aeration (Boyd 1998). Agricultural irrigation, created wetlands, settling basins, and biological filters are also practical methods for reducing and improving the quality of effluent from ponds

Countries with regulations on farm practices and effluent standards follow guidelines and permit processes. However, countries without aquaculture regulations can also apply BMPs to minimize off-site water pollution and related environmental impacts. The code of conduct and codes of practice become useful tools for the farmers to adopt and serve as the guiding tool. As described by Boyd (2003) the code of conduct is a system of rules on how aquaculture should be conducted. The guiding principles for responsible aquaculture by the Global Aquaculture Alliance (GAA) serve as the code of conduct. In order to avoid social and environmental problems, codes of practice are used to solve the problems through management activities. Overall the goal of these codes is to minimize, or remove the negative impacts of an aquaculture operation (Boyd 2003). Boyd (2003) describes BMPs as management practices that are the most effective at reducing pollution

Although not comprehensive, Boyd (2003) highlights some BMPs for pond aquaculture: a. use stocking and feeding rates that do not exceed the assimilative capacity of ponds; b. avoid overfeeding and apply a strict feeding plan; c. do not use fertilizers unless it is absolutely necessary to promote healthy phytoplankton growth; d. reduce water exchange; e. reuse water as much as possible; f. use a settling basin if available to treat pond effluents before final discharge. Application of these recommendations is based on farm operation and design, species cultured, and culture methods used (Boyd 2003). As Boyd states, selection of BMPs is case specific. One such example includes 10 codes of practice established for responsible shrimp farming by the GAA including mangroves, site evaluation, design and construction, feeds and feed use, shrimp health management, effluents, solids waste and few others. Although one BMP may be sufficient for one small farm, multiple BMPs may be necessary for others. ALEARN (www.alearn.info) listed over 20 best management practices for ponds, raceways,

levels and other environmental impacts which meet water quality or resource management goals.

Planting herbs in a floating Styrofoam sheet (Photos courtesy of Blank).

roots; c. Planting herbs in a floating Styrofoam sheet (Photos courtesy of Blank).

 **4. Best Management Practices (BMPs) and Sustainable Aquaculture** 

practices in this chapter will focus on the pond management.

(Setty 2013; Tucker 2009; Ozbay and Jackson 2006).

the pond management.

**a b c**

**Figure 11.** a. An indoor multi-tank recirculating aquaculture system (RAS); b. A parabolic screen filter in a RAS (Photo

friendly in the United States.

40 Sustainable Aquaculture Techniques

courtesy of Blank).

Facility at Delaware State University, Dover, DE, USA.

Countries with regulations on farm practices and effluent standards follow guidelines and permit processes. However, countries without aquaculture regulations can also apply BMPs to minimize off-site water pollution and related environmental impacts. The code of conduct and codes of practice become useful tools for the farmers to adopt and serve as the guiding tool. As described by Boyd (2003) the code of conduct is a system of rules on how aquaculture should be conducted. The guiding principles for responsible aquaculture by the Global Aquaculture Alliance (GAA) serve as the code of conduct. In order to avoid social and environmental problems, codes of practice are used to solve the problems through manage‐ ment activities. Overall the goal of these codes is to minimize, or remove the negative impacts of an aquaculture operation (Boyd 2003). Boyd (2003) describes BMPs as management practices that are the most effective at reducing pollution levels and other environmental impacts which meet water quality or resource management goals.

Although not comprehensive, Boyd (2003) highlights some BMPs for pond aquaculture: a. use stocking and feeding rates that do not exceed the assimilative capacity of ponds; b. avoid overfeeding and apply a strict feeding plan; c. do not use fertilizers unless it is absolutely necessary to promote healthy phytoplankton growth; d. reduce water exchange; e. reuse water as much as possible; f. use a settling basin if available to treat pond effluents before final discharge. Application of these recommendations is based on farm operation and design, species cultured, and culture methods used (Boyd 2003). As Boyd states, selection of BMPs is case specific. One such example includes 10 codes of practice established for responsible shrimp farming by the GAA including mangroves, site evaluation, design and construction, feeds and feed use, shrimp health management, effluents, solids waste and few others. Although one BMP may be sufficient for one small farm, multiple BMPs may be necessary for others. ALEARN (www.alearn.info) listed over 20 best management practices for ponds, raceways, cages, effluents, safety, and others.

Shrimp aquaculture is a rapidly expanding field and is being closely scrutinized by environ‐ mentalists and government agencies. Due to the need for saltwater, discharge from shrimp facilities often flows into fragile coastal ecosystems. Problems associated with discharge include eutrophication due to nitrogen loading and detritus, low dissolved oxygen levels, sedimentation, along with other problems (Villalon 1991). These problems however are not without solutions; treatment of effluent should be regarded as an opportunity rather than just an obligation. Our goal is to provide broader perspectives on how basic principles and natural solutions can make shrimp aquaculture longer lived and be more sustainable. We discuss some of the management strategies current shrimp aquaculture operations along with best man‐ agement practices for reducing potential impacts of shrimp aquaculture.

Although this may not be the ultimate solution, one particular recommendation discussed in this section would be to improve shrimp management practices. The mariculture of shrimp may provide one of the best opportunities for polyculture and integrated systems. Shrimp require higher water quality standards than many other cultured species and, thus, would benefit from a more stable ecosystem. The ability of shrimp to utilize a broad spectrum of the food web would allow them to be cultured with a number of other species. Feed and fertili‐ zation management can be geared toward supporting the food web to produce food items which shrimp prefer, rather than relying on the direct consumption of pelleted feed. In addition, Hopkins et al. (1991) discussed how dissolved oxygen levels were higher in poly‐ culture ponds presumably due to a healthier phytoplankton community. Thus, polyculture may actually reduce aeration costs.

The Best Aquaculture Practices (BAP) standards developed by the Global Aquaculture Alliance (GAA 2011) "address environmental and social responsibility, animal welfare, food safety and traceability in a certification program voluntary for aquaculture facilities." Certifi‐ cation for BAP ensures aquaculture operation is responsible and operates by the quantitative guidelines by which the farm operation is evaluated based on those practices. There are various standards developed in aquaculture sector including fish farm, hatchery, feed mill, and processing plant. The standard for the multi-species farming opens whole new area of attention with the new aquatic species used in integrated culture condition. Species BAP Standards used include channel catfish, shrimp, tilapia, and *Pangasius* initially and seabass, sea bream, cobia, seriola, trout, grouper, barramundi, perch, carp, flounder, turbot, striped bass, crabs, fresh‐ water prawns, mussels, crawfish recent. According to GAA (2011), the new multi-species farm standards apply to all types of culture systems for finfish and crustaceans but not including cage-raised salmonids since this operation requires separate BAP standards. Seven of the most recent BAP standards listed in the GAA website (http://www.gaalliance.org/bap/stand‐ ards.php) include Seafood processing/repacking plant, seafood processing plant, finfish and

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

43

crustacean farm, salmon farm, mussel farm, shrimp hatchery, and feed mill.

concerned about keeping biodiversity in the streams, rivers and estuaries.

There are many definitions for sustainability and sustainability with regard to a catfish farm may not be sustainable for a shrimp farm. For aquaculture, sustainable aquaculture is an ultimate goal with the application of all the best aquaculture standards and management practices. Sustainability is described by the Northwest Earth Institute (2012) simply as meeting the needs of the present without compromising the ability of future generations to meet their

The United States Environmental Protection Agency (USEPA 2004) initiated a new rule called the "effluent limitations guidelines (ELGs)' for concentrated aquatic animal production facilities including aquaculture facilities. This rule is applied to all commercial aquaculture facilities, with the below mentioned specifications, that discharge their wastewater from their farms directly into waters of the United States. According to the final rule, aquaculture facilities that "produce at least 45,360kg a year in flow-through and recirculating systems that discharge wastewater at least 30 days a year (used primarily to raise trout, salmon, hybrid striped bass and tilapia); at least 45,360 kg a year in net pens or submerged cage systems (used primarily to raise salmon)." The whole expectation with implementation of this rule is that the ELGs will help reduce discharges of conventional pollutants, primarily total suspended solids. As the solids are removed, it is expected that non-conventional pollutants such as nutrients will also be reduced. Other contaminants not discussed in this chapter include heavy metals, drug residues and other hormonal chemicals used in facilities to manage fish health and chemicals and better growth and this regulation is expected to be effective for reducing those contami‐ nants in discharges of the facilities. With the implementation of this rule through National Pollution Discharge Elimination System (NPDES) permits the discharge of total suspended solids are expected to be reduced more than 226,796 kg per year, and the biochemical oxygen demand and nutrients in discharge is to be reduced by about 136,078 kg per year. With the application of this rule it is expected that water quality conditions will be improved and provide increased opportunity for other users, swimmers, fisherman and environmentalists

Hollingsworth et al. (2006) suggests growers may develop a farm-specific Standard Operating Procedure (SOP) manual and apply the code of conduct for significant farm practices in their SOP manuals. Although not required for all farms, the development of farm specific proce‐ dures will promote efficient management decisions including trouble shooting problems, training employees, planning future expansions or developing biosecurity and emergency procedure plans.

Many states in the United States have adopted BMPs over the years and some states and countries have implemented further policies and regulations based on scientific knowledge to sustain the environment and aquaculture industry. One specific example is that of Louisiana's aquaculture producers (Lutz et al. 2011). By implementation and application of best manage‐ ment practices, producers minimize potential pollutants (i.e., mainly excess nutrients) to the state's water resources and by doing so they reduce the cost that would be incurred to treat water quality problems, potential disease outbreaks and wild fish stock mortality related costs. Lutz et al. (2011) suggested that sediment runoff reduction should be one of the most important practices a pond aquaculture farmer must adopt to save money and reduce the environmental foot print of their operation. As an example, in Thailand shrimp aquaculture, scientists and policy-makers have developed new ways to improve the quality of the culture system, ecosystem, as well as the efficiency of regulations. It is critical that advances such as this and many other practices are discussed and maintained with integrity and strong regulations to improve the quality of our shared water resources for future generations. The key is to make aquaculture an asset to the environment while continuing to food production simultaneously.

Initial efforts and guidance on BMPs have been developed by Hargreaves et al. (2003). He has provided guide sheets on various topics and issues of concerns including reducing storm runoff into ponds, managing ponds to reduce effluent volume, erosion control on watersheds and embankments, pond management to minimize erosion, control of erosion by effluents, settling basins and wetlands, feed management, fertilization of catfish ponds, water quality protection to improve effluents, water quality enhancers, therapeutic agents, fish carcasses, general operations and worker safety, emergency response and management, and a few others added as the technology advanced in recirculating, bioflocs and aquaponics systems and other aquaculture operations.

The Best Aquaculture Practices (BAP) standards developed by the Global Aquaculture Alliance (GAA 2011) "address environmental and social responsibility, animal welfare, food safety and traceability in a certification program voluntary for aquaculture facilities." Certifi‐ cation for BAP ensures aquaculture operation is responsible and operates by the quantitative guidelines by which the farm operation is evaluated based on those practices. There are various standards developed in aquaculture sector including fish farm, hatchery, feed mill, and processing plant. The standard for the multi-species farming opens whole new area of attention with the new aquatic species used in integrated culture condition. Species BAP Standards used include channel catfish, shrimp, tilapia, and *Pangasius* initially and seabass, sea bream, cobia, seriola, trout, grouper, barramundi, perch, carp, flounder, turbot, striped bass, crabs, fresh‐ water prawns, mussels, crawfish recent. According to GAA (2011), the new multi-species farm standards apply to all types of culture systems for finfish and crustaceans but not including cage-raised salmonids since this operation requires separate BAP standards. Seven of the most recent BAP standards listed in the GAA website (http://www.gaalliance.org/bap/stand‐ ards.php) include Seafood processing/repacking plant, seafood processing plant, finfish and crustacean farm, salmon farm, mussel farm, shrimp hatchery, and feed mill.

Although this may not be the ultimate solution, one particular recommendation discussed in this section would be to improve shrimp management practices. The mariculture of shrimp may provide one of the best opportunities for polyculture and integrated systems. Shrimp require higher water quality standards than many other cultured species and, thus, would benefit from a more stable ecosystem. The ability of shrimp to utilize a broad spectrum of the food web would allow them to be cultured with a number of other species. Feed and fertili‐ zation management can be geared toward supporting the food web to produce food items which shrimp prefer, rather than relying on the direct consumption of pelleted feed. In addition, Hopkins et al. (1991) discussed how dissolved oxygen levels were higher in poly‐ culture ponds presumably due to a healthier phytoplankton community. Thus, polyculture

Hollingsworth et al. (2006) suggests growers may develop a farm-specific Standard Operating Procedure (SOP) manual and apply the code of conduct for significant farm practices in their SOP manuals. Although not required for all farms, the development of farm specific proce‐ dures will promote efficient management decisions including trouble shooting problems, training employees, planning future expansions or developing biosecurity and emergency

Many states in the United States have adopted BMPs over the years and some states and countries have implemented further policies and regulations based on scientific knowledge to sustain the environment and aquaculture industry. One specific example is that of Louisiana's aquaculture producers (Lutz et al. 2011). By implementation and application of best manage‐ ment practices, producers minimize potential pollutants (i.e., mainly excess nutrients) to the state's water resources and by doing so they reduce the cost that would be incurred to treat water quality problems, potential disease outbreaks and wild fish stock mortality related costs. Lutz et al. (2011) suggested that sediment runoff reduction should be one of the most important practices a pond aquaculture farmer must adopt to save money and reduce the environmental foot print of their operation. As an example, in Thailand shrimp aquaculture, scientists and policy-makers have developed new ways to improve the quality of the culture system, ecosystem, as well as the efficiency of regulations. It is critical that advances such as this and many other practices are discussed and maintained with integrity and strong regulations to improve the quality of our shared water resources for future generations. The key is to make aquaculture an asset to the environment while continuing to food production simultaneously.

Initial efforts and guidance on BMPs have been developed by Hargreaves et al. (2003). He has provided guide sheets on various topics and issues of concerns including reducing storm runoff into ponds, managing ponds to reduce effluent volume, erosion control on watersheds and embankments, pond management to minimize erosion, control of erosion by effluents, settling basins and wetlands, feed management, fertilization of catfish ponds, water quality protection to improve effluents, water quality enhancers, therapeutic agents, fish carcasses, general operations and worker safety, emergency response and management, and a few others added as the technology advanced in recirculating, bioflocs and aquaponics systems and other

may actually reduce aeration costs.

42 Sustainable Aquaculture Techniques

procedure plans.

aquaculture operations.

The United States Environmental Protection Agency (USEPA 2004) initiated a new rule called the "effluent limitations guidelines (ELGs)' for concentrated aquatic animal production facilities including aquaculture facilities. This rule is applied to all commercial aquaculture facilities, with the below mentioned specifications, that discharge their wastewater from their farms directly into waters of the United States. According to the final rule, aquaculture facilities that "produce at least 45,360kg a year in flow-through and recirculating systems that discharge wastewater at least 30 days a year (used primarily to raise trout, salmon, hybrid striped bass and tilapia); at least 45,360 kg a year in net pens or submerged cage systems (used primarily to raise salmon)." The whole expectation with implementation of this rule is that the ELGs will help reduce discharges of conventional pollutants, primarily total suspended solids. As the solids are removed, it is expected that non-conventional pollutants such as nutrients will also be reduced. Other contaminants not discussed in this chapter include heavy metals, drug residues and other hormonal chemicals used in facilities to manage fish health and chemicals and better growth and this regulation is expected to be effective for reducing those contami‐ nants in discharges of the facilities. With the implementation of this rule through National Pollution Discharge Elimination System (NPDES) permits the discharge of total suspended solids are expected to be reduced more than 226,796 kg per year, and the biochemical oxygen demand and nutrients in discharge is to be reduced by about 136,078 kg per year. With the application of this rule it is expected that water quality conditions will be improved and provide increased opportunity for other users, swimmers, fisherman and environmentalists concerned about keeping biodiversity in the streams, rivers and estuaries.

There are many definitions for sustainability and sustainability with regard to a catfish farm may not be sustainable for a shrimp farm. For aquaculture, sustainable aquaculture is an ultimate goal with the application of all the best aquaculture standards and management practices. Sustainability is described by the Northwest Earth Institute (2012) simply as meeting the needs of the present without compromising the ability of future generations to meet their own needs" (taken from UN World Commission on Environment and Development, Our Common Future). According to the Monterey Bay Aquarium (2013), environmental impact of fish farming varies depending on the species cultured, location of the farm, life stage of the organism, methods of culture and culture technique. Creating a sustainable farm should ensure species cultured will last long and habitat damage be minimal. The key factor with aquaculture sustainability is to operate with sound environmental management practices in place (FAO FOCUS 2013). There are tremendous efforts being made to use integrated aqua‐ culture-agriculture farming systems to sustain both aquaculture operations and maintain the healthy environmental conditions for aquatic life in rivers, streams and estuaries. Environ‐ mentally friendly methods are also beneficial to the species cultured and farm operation (FAO FOCUS 2013). Sustainable aquaculture should utilize the most readily available technology to produce high protein food diets while applying the same exact principle to reduce its envi‐ ronmental impact using similar technology. Sustainability is not a practice, it is a life style and condition we must grasp.

impacted the wild capture fisheries. Therefore, production from aquaculture has gradually begun to play a more important role in maintaining total fisheries production (Figure 13).

**Figure 13.** Thailand fisheries production from 2000-2010 (Thailand DOF Information System Center 2011).

1998 2000 2002 2004 2006 2008 2010 2012

**Year**

growth and market demands in the country (Figure 14) (Thailand DOF Information System Center 2011).

**Figure 14.** Freshwater and coastal aquaculture production from 2000-2010 (Thailand DOF 2011).

1998 2000 2002 2004 2006 2008 2010 2012

**Year**

 **Figure 15.** Brackish water aquaculture production by group from 2000-2010 (Thailand DOF 2011).

1998 2000 2002 2004 2006 2008 2010 2012

**Year**

shrimp culture is the most cultured species within brackish water aquaculture, globally.

**Figure 14.** Freshwater and coastal aquaculture production from 2000-2010 (Thailand DOF 2011).

Fish culture

Shrimp culture

Shellfish culture

Aquaculture in Thailand evolved from traditional practice to modern science-based practices as aquaculture technology and innovations developed. Therefore, aquaculture in coastal areas, which contribute more national economics and provide more benefit to farmers, tended to increase and contribute more when compared to freshwater species, especially brackish water-cultured shrimp and prawn. However, aquaculture in freshwater areas has also increased due to population

Of the three main groups of brackish water aquaculture – fish, shrimp, and shellfish – shrimp culture has increased dramatically while fish culture has decreased and become steady from 2000 – 2010, while shellfish culture production dropped because of shellfish diseases and natural changes (Thailand DOF Information System Center 2011) (Figure 15). However,

**Figure 13.** Thailand fisheries production from 2000-2010 (Thailand DOF Information System Center 2011). Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. <sup>|</sup> **<sup>35</sup>**

Total Capture Culture

http://dx.doi.org/10.5772/57471

45

Coastal culture

Freshwater culture

role in maintaining total fisheries production (Figure 13).

 - ,100.0 ,200.0 ,300.0 ,400.0 ,500.0 ,600.0 ,700.0 ,800.0 ,900.0 1,000.0


,100.0

,200.0

,300.0

**x1,000 Ton**

,400.0

,500.0

,600.0

,700.0

**x1,000 Ton**

**x1,000 Ton**

Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **34**

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

rivers, swamps, and reservoirs. Thailand also has a 3,500 kilometer-long coast line including both the Gulf of Thailand and Andaman Sea, including more than 900 islands. However, drastic changes to these habitats and overfishing have negatively impacted the wild capture fisheries. Therefore, production from aquaculture has gradually begun to play a more important

Although it is beyond the scope of this chapter, the application of innovative technology in sustainable aquaculture such as Geographic Information Systems (GIS) would be an effective tool for selecting sites for bivalve culture and farm management. Coupled with ecosystem models, this technology can assist in predicting the carrying capacity of estuaries (Newell et al. 2013). Similar to shellfish site selection and farm management, Clearwater Seafoods has utilized GIS to take an informed approach to harvesting which minimizes the impact of fishing activities and promotes sustainability both at sea and on land. By investing in GIS, this company saved and minimizes their impacts on ocean ecosystems and promotes a sustainable approach to fishing (ESRI News 2013).

#### **5. Case Study: Sustainable aquaculture culture in Thailand**

Fisheries have long been integral to the Thai way of life. Management of fisheries in Thailand began in 1901 with the establishment of the Thailand Department of Fisheries (DOF). In 1901, the ministry of interior issued 3 guidelines to manage fisheries resources: 1) produce fisheries production for population in country, 2) produce fisheries production for country income, and 3) taxation for capture fisheries. However, only taxation was implemented because there was no fisheries biologist at that moment. In 1923, Dr. Hugh M. Smith, MD., LL.D (Commissioner of Fisheries USA) was invited as an advisor in fisheries to His Siamese Majesty's Government. After finishing his survey research, he published a book called "A Review of the Aquatic Resources and Fisheries of Siam, with Plans and Recommendation for the Administration, Conservation and Development". In 1926, the Department of Fisheries was established and Dr. Smith was appointed to be head official. Under his guidance, management systems were implemented and continue to be conducted. Fisheries production in the beginning relied mainly on wild capture since Thailand has many natural freshwater resources scattered all over the country, such as rivers, swamps, and reservoirs. Thailand also has a 3,500 kilometerlong coast line including both the Gulf of Thailand and Andaman Sea, including more than 900 islands. However, drastic changes to these habitats and overfishing have negatively impacted the wild capture fisheries. Therefore, production from aquaculture has gradually begun to play a more important role in maintaining total fisheries production (Figure 13). rivers, swamps, and reservoirs. Thailand also has a 3,500 kilometer-long coast line including both the Gulf of Thailand and

role in maintaining total fisheries production (Figure 13).

Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **34**

Andaman Sea, including more than 900 islands. However, drastic changes to these habitats and overfishing have negatively impacted the wild capture fisheries. Therefore, production from aquaculture has gradually begun to play a more important

own needs" (taken from UN World Commission on Environment and Development, Our Common Future). According to the Monterey Bay Aquarium (2013), environmental impact of fish farming varies depending on the species cultured, location of the farm, life stage of the organism, methods of culture and culture technique. Creating a sustainable farm should ensure species cultured will last long and habitat damage be minimal. The key factor with aquaculture sustainability is to operate with sound environmental management practices in place (FAO FOCUS 2013). There are tremendous efforts being made to use integrated aqua‐ culture-agriculture farming systems to sustain both aquaculture operations and maintain the healthy environmental conditions for aquatic life in rivers, streams and estuaries. Environ‐ mentally friendly methods are also beneficial to the species cultured and farm operation (FAO FOCUS 2013). Sustainable aquaculture should utilize the most readily available technology to produce high protein food diets while applying the same exact principle to reduce its envi‐ ronmental impact using similar technology. Sustainability is not a practice, it is a life style and

Although it is beyond the scope of this chapter, the application of innovative technology in sustainable aquaculture such as Geographic Information Systems (GIS) would be an effective tool for selecting sites for bivalve culture and farm management. Coupled with ecosystem models, this technology can assist in predicting the carrying capacity of estuaries (Newell et al. 2013). Similar to shellfish site selection and farm management, Clearwater Seafoods has utilized GIS to take an informed approach to harvesting which minimizes the impact of fishing activities and promotes sustainability both at sea and on land. By investing in GIS, this company saved and minimizes their impacts on ocean ecosystems and promotes a sustainable

Fisheries have long been integral to the Thai way of life. Management of fisheries in Thailand began in 1901 with the establishment of the Thailand Department of Fisheries (DOF). In 1901, the ministry of interior issued 3 guidelines to manage fisheries resources: 1) produce fisheries production for population in country, 2) produce fisheries production for country income, and 3) taxation for capture fisheries. However, only taxation was implemented because there was no fisheries biologist at that moment. In 1923, Dr. Hugh M. Smith, MD., LL.D (Commissioner of Fisheries USA) was invited as an advisor in fisheries to His Siamese Majesty's Government. After finishing his survey research, he published a book called "A Review of the Aquatic Resources and Fisheries of Siam, with Plans and Recommendation for the Administration, Conservation and Development". In 1926, the Department of Fisheries was established and Dr. Smith was appointed to be head official. Under his guidance, management systems were implemented and continue to be conducted. Fisheries production in the beginning relied mainly on wild capture since Thailand has many natural freshwater resources scattered all over the country, such as rivers, swamps, and reservoirs. Thailand also has a 3,500 kilometerlong coast line including both the Gulf of Thailand and Andaman Sea, including more than 900 islands. However, drastic changes to these habitats and overfishing have negatively

**5. Case Study: Sustainable aquaculture culture in Thailand**

condition we must grasp.

44 Sustainable Aquaculture Techniques

approach to fishing (ESRI News 2013).

Aquaculture in Thailand evolved from traditional practice to modern science-based practices as aquaculture **Figure 13.** Thailand fisheries production from 2000-2010 (Thailand DOF Information System Center 2011). Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. <sup>|</sup> **<sup>35</sup>**

**Figure 13.** Thailand fisheries production from 2000-2010 (Thailand DOF Information System Center 2011).

technology and innovations developed. Therefore, aquaculture in coastal areas, which contribute more national economics

**Figure 14.** Freshwater and coastal aquaculture production from 2000-2010 (Thailand DOF 2011).

shrimp culture is the most cultured species within brackish water aquaculture, globally.

Fish culture

Shrimp culture

Shellfish culture

**Figure 14.** Freshwater and coastal aquaculture production from 2000-2010 (Thailand DOF 2011).

 **Figure 15.** Brackish water aquaculture production by group from 2000-2010 (Thailand DOF 2011).

1998 2000 2002 2004 2006 2008 2010 2012

**Year**


,100.0

,200.0

,300.0

**x1,000 Ton**

,400.0

,500.0

,600.0

,700.0

Of the three main groups of brackish water aquaculture – fish, shrimp, and shellfish – shrimp culture has increased dramatically while fish culture has decreased and become steady from 2000 – 2010, while shellfish culture production dropped because of shellfish diseases and natural changes (Thailand DOF Information System Center 2011) (Figure 15). However, ,500.0

 ,700.0 ,800.0 ,900.0 1,000.0

Aquaculture in Thailand evolved from traditional practice to modern science-based practices as aquaculture technology and innovations developed. Therefore, aquaculture in coastal areas, which contribute more national economics and provide more benefit to farmers, tended to increase and contribute more when compared to freshwater species, especially brackish watercultured shrimp and prawn. However, aquaculture in freshwater areas has also increased due to population growth and market demands in the country (Figure 14) (Thailand DOF Infor‐ mation System Center 2011). - ,100.0 ,200.0 ,300.0 ,400.0 1998 2000 2002 2004 2006 2008 2010 2012 Coastal culture Freshwater culture

Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **35**

year 2010 (Center for Agricultural Information 2011), making Thailand one of the largest

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

47

Cultured shrimp, in particular, has come under threat in key export markets due to adverse publicity concerning the environmental and social impact of some aquaculture activities (Kongkeo, 2001). Some of this publicity has served to highlight some of the negative environmental and social impacts that have occurred in the development of aquaculture. These include the destruction of wetlands and mangrove forests, water pollution, reduc‐ tion of biodiversity, waste of natural resources, and loss of access to fishing grounds by artisanal fisherman (Boyd and Tucker, 1998). Therefore, management inputs that remedy these problems that occur between culturing period and after harvesting such as chemi‐ cals used, water management, water discharge, etc. must be considered in order to

encourage sustainable growth and practices within the shrimp aquaculture sector.

ty, and mitigate social and environmental impact concerns.

Shrimp culture in Thailand is performed under intensive culture conditions which consumes heavy feed, water supply, and aeration; therefore, management must play a key role in helping to reduce problems and the impacts of effluent from culturing systems. Sustainable shrimp culture, economically speaking, is less about increasing production but more about the ability to maintain steady production, customer satisfaction and reliabili‐

Long before Good Aquaculture Practices (GAPs) and Food and Agriculture Organization (FAO) Code of Conduct for Responsible Fisheries (CoC) were integrated in Thailand, best management practices were implemented by the Department of Fisheries to increase farm productivity while minimizing the environmental impacts. The environmental issues caused by the effluent discharges of the shrimp culture facilities have been one major concern of the aquaculture operation. Some of these management practices facilitated by the Department of Fisheries at the National and local level have focused on increasing feed conversion ratios, better water exchange, aeration, and pond management, and, if availa‐ ble, applying integrated multi-trophic aquaculture technology to reduce nutrient loads from farm effluents and increase profits. Specifically, aquaponics using commercial crop systems become popular and practical to the farmers while the operation is sustained and be‐

The Thailand DOF integrated GAP and CoC in 1998 with support from the World Bank. Under GAP standard, the requirement are farm registration;, farm management; use of veterinary drugs chemical, hazardous substances, and probiotics used in aquaculture; farm sanitation; harvest and post-harvest prior to distribution; effluent and sediment manage‐ ment; energy source and fuel use; social and environmental responsibility; and record keeping. Code of Conduct for shrimp culture has two components: operational guide‐ lines for hatcheries and farms, and guidelines for harvesting and transport. These practi‐ ces - GAP and CoC - are standard for shrimp culture to ensure that shrimp culture has minimal to no chemical residues which protects consumers and applies environmental

shrimp exporters in the world.

come environmental friendly.

Of the three main groups of brackish water aquaculture – fish, shrimp, and shellfish – shrimp culture has increased dramatically while fish culture has decreased and become steady from 2000 – 2010, while shellfish culture production dropped because of shellfish diseases and natural changes (Thailand DOF Information System Center 2011) (Figure 15). However, shrimp culture is the most cultured species within brackish water aquaculture, globally. **Figure 14.** Freshwater and coastal aquaculture production from 2000-2010 (Thailand DOF 2011). Of the three main groups of brackish water aquaculture – fish, shrimp, and shellfish – shrimp culture has increased dramatically while fish culture has decreased and become steady from 2000 – 2010, while shellfish culture production dropped because of shellfish diseases and natural changes (Thailand DOF Information System Center 2011) (Figure 15). However, **Year**

shrimp culture is the most cultured species within brackish water aquaculture, globally.

**Figure 15.** Brackish water aquaculture production by group from 2000-2010 (Thailand DOF 2011).

 **Figure 15.** Brackish water aquaculture production by group from 2000-2010 (Thailand DOF 2011).

Shrimp culture in Thailand started more than 50 years ago. Production has been greatly increased within the last three decades as intensive farming techniques were developed and applied. In the beginning of brackish water shrimp culture the major shrimp species used was tiger prawn (*Peneaeus monodon*), which was substituted by white shrimp (*Peneaeus vannamei*) by more than 95%, by the year 2000 (Bureau of Agricultural Economic Re‐ search, 2011). Thailand now exports shrimp products at about 500,000 tons annually in the year 2010 (Center for Agricultural Information 2011), making Thailand one of the largest shrimp exporters in the world.

Aquaculture in Thailand evolved from traditional practice to modern science-based practices as aquaculture technology and innovations developed. Therefore, aquaculture in coastal areas, which contribute more national economics and provide more benefit to farmers, tended to increase and contribute more when compared to freshwater species, especially brackish watercultured shrimp and prawn. However, aquaculture in freshwater areas has also increased due to population growth and market demands in the country (Figure 14) (Thailand DOF Infor‐

Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **35**

Coastal culture

Freshwater culture

Of the three main groups of brackish water aquaculture – fish, shrimp, and shellfish – shrimp culture has increased dramatically while fish culture has decreased and become steady from 2000 – 2010, while shellfish culture production dropped because of shellfish diseases and natural changes (Thailand DOF Information System Center 2011) (Figure 15). However, shrimp culture is the most cultured species within brackish water aquaculture, globally.

1998 2000 2002 2004 2006 2008 2010 2012

**Year**

Of the three main groups of brackish water aquaculture – fish, shrimp, and shellfish – shrimp culture has increased dramatically while fish culture has decreased and become steady from 2000 – 2010, while shellfish culture production dropped because of shellfish diseases and natural changes (Thailand DOF Information System Center 2011) (Figure 15). However,

**Figure 14.** Freshwater and coastal aquaculture production from 2000-2010 (Thailand DOF 2011).

 **Figure 15.** Brackish water aquaculture production by group from 2000-2010 (Thailand DOF 2011).

Shrimp culture in Thailand started more than 50 years ago. Production has been greatly increased within the last three decades as intensive farming techniques were developed and applied. In the beginning of brackish water shrimp culture the major shrimp species used was tiger prawn (*Peneaeus monodon*), which was substituted by white shrimp (*Peneaeus vannamei*) by more than 95%, by the year 2000 (Bureau of Agricultural Economic Re‐ search, 2011). Thailand now exports shrimp products at about 500,000 tons annually in the

**Figure 15.** Brackish water aquaculture production by group from 2000-2010 (Thailand DOF 2011).

1998 2000 2002 2004 2006 2008 2010 2012

**Year**

shrimp culture is the most cultured species within brackish water aquaculture, globally.

Fish culture

Shrimp culture

Shellfish culture

mation System Center 2011).

 - ,100.0 ,200.0 ,300.0 ,400.0 ,500.0 ,600.0 ,700.0 ,800.0 ,900.0 1,000.0

46 Sustainable Aquaculture Techniques


,100.0

,200.0

,300.0

**x1,000 Ton**

,400.0

,500.0

,600.0

,700.0

**x1,000 Ton**

Cultured shrimp, in particular, has come under threat in key export markets due to adverse publicity concerning the environmental and social impact of some aquaculture activities (Kongkeo, 2001). Some of this publicity has served to highlight some of the negative environmental and social impacts that have occurred in the development of aquaculture. These include the destruction of wetlands and mangrove forests, water pollution, reduc‐ tion of biodiversity, waste of natural resources, and loss of access to fishing grounds by artisanal fisherman (Boyd and Tucker, 1998). Therefore, management inputs that remedy these problems that occur between culturing period and after harvesting such as chemi‐ cals used, water management, water discharge, etc. must be considered in order to encourage sustainable growth and practices within the shrimp aquaculture sector.

Shrimp culture in Thailand is performed under intensive culture conditions which consumes heavy feed, water supply, and aeration; therefore, management must play a key role in helping to reduce problems and the impacts of effluent from culturing systems. Sustainable shrimp culture, economically speaking, is less about increasing production but more about the ability to maintain steady production, customer satisfaction and reliabili‐ ty, and mitigate social and environmental impact concerns.

Long before Good Aquaculture Practices (GAPs) and Food and Agriculture Organization (FAO) Code of Conduct for Responsible Fisheries (CoC) were integrated in Thailand, best management practices were implemented by the Department of Fisheries to increase farm productivity while minimizing the environmental impacts. The environmental issues caused by the effluent discharges of the shrimp culture facilities have been one major concern of the aquaculture operation. Some of these management practices facilitated by the Department of Fisheries at the National and local level have focused on increasing feed conversion ratios, better water exchange, aeration, and pond management, and, if availa‐ ble, applying integrated multi-trophic aquaculture technology to reduce nutrient loads from farm effluents and increase profits. Specifically, aquaponics using commercial crop systems become popular and practical to the farmers while the operation is sustained and be‐ come environmental friendly.

The Thailand DOF integrated GAP and CoC in 1998 with support from the World Bank. Under GAP standard, the requirement are farm registration;, farm management; use of veterinary drugs chemical, hazardous substances, and probiotics used in aquaculture; farm sanitation; harvest and post-harvest prior to distribution; effluent and sediment manage‐ ment; energy source and fuel use; social and environmental responsibility; and record keeping. Code of Conduct for shrimp culture has two components: operational guide‐ lines for hatcheries and farms, and guidelines for harvesting and transport. These practi‐ ces - GAP and CoC - are standard for shrimp culture to ensure that shrimp culture has minimal to no chemical residues which protects consumers and applies environmental friendly practices. Three year GAP or CoC certificates are issued by the Thailand DOF to shrimp farms after they meet qualifications and comply with annual surveillance.

Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **38**

**a b**

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

49

**c d**

 **Figure 16. a.** Clean and dried pond before start; **b.** Water quality monitoring; **c.** Water drained into treatment ponds; **d.** Aeration in culturing period using paddle wheel aerators; **e.** Shrimp health sampling with a cast net; **f.** Shrimp monitoring

**Figure 16.** a. Clean and dried pond before start; b. Water quality monitoring; c. Water drained into treatment ponds; d. Aeration in culturing period using paddle wheel aerators; e. Shrimp health sampling with a cast net; f. Shrimp moni‐

In recent years aquaculture has gone through the "blue revolution" in which there has been rapid growth worldwide in aquaculture production of both fresh and saltwater fish and shellfish species. In part this is due to the fact that the natural fisheries are close to their maximum sustainable yield. However, this rapid growth in aquaculture may also be attributed to the ever increasing world population and an increase in demand for high protein sources

*In recent years aquaculture has gone through the "blue revolution" in which there has been rapid growth worldwide in aquaculture production of both fresh and saltwater fish and shellfish species. In part this is due to the fact that the natural fisheries are close to their maximum sustainable yield. However, this rapid growth in aquaculture may also be attributed to the ever increasing world population and an increase in demand for high protein sources of seafood. In the past, aquaculture has been demonized for destruction of mangroves worldwide for shrimp production as well as causing potential eutrophication through unwelcomed discharges of nutrient rich* 

**e g**

**f**

with a lift net; and **g.** Collected specimens are assessed for growth and survival rate.

toring with a lift net; and g. Collected specimens are assessed for growth and survival rate.

**6. Final Remarks** 

**6. Final remarks**

*effluents.* 

Shrimp culture systems in Thailand also have a traceability system from farm to product which initially started as a form of hatchery management. Some hatcheries complied with bio-secure systems to ensure that larvae produced are healthy and viable before selling to grow-out farmers. Hatcheries must provide Fry Movement Documents (FMD) to their customers to indicate the number of fry that a farmer purchases in addition to other hatchery information since this document is checked if any problems occur during growout. Shrimp farmers must also provide Movement Documents (MD) which indicate the weight of shrimp in the shipment in addition to other farm information to processing plants or their customers. A DOF officer checks MD, Hazard Analysis and Critical Control Point (HACCP), GMP, and product quality at the processing plant before issuing product health certificates.

Moreover, many policies and projects are established for sustainable aquaculture sup‐ port. The agencies involved at the national level include, the Department of Fisheries, Pollution Control Department and Department of Marine and Costal Resources, while there are Provincial government and Local Administrative Organization involve at local level. Water quality testing program pond and discharge water responsible by DOF and water quality in natural water responsible by Pollution Control Department, etc. Mangrove rehabitation projects are established by the national and local government sectors, private sector, and Non-Governmental Organizations (NGOs) to increase mangrove forest area along the costal zones. Thailand also supports Non Illegal Unreported Unregulated Fishing (Non-IUU) and issued several programs for fish resource conservation, which include combatting IUU fishing, prohibiting certain fishing gears within spawning season, and expanding fish conservation areas. Although wild fisheries are not a part of the discus‐ sion in this chapter, it does play a part serving as a source of fish meal industry which is used in aquaculture feed. Therefore, control of IUU and certain fishing gear, will support sustainable aquaculture.

In conclusion, fisheries production in Thailand has decreased while aquaculture production has increased and plays a vital role for providing a high protein food source for economic development in the future. Aquaculture in Thailand evolved from traditional practice to science-based due to a number of policies and regulations put in the place to sustain both the aquaculture industry and the environment. Shrimp aquaculture in Thailand is an excellent example of why sustainable aquaculture practices are necessary and how they have become implemented. With the establishment of GAP and CoC, Thailand has ensured that shrimp farming results in production of a high quality product, safe from chemical residues, that is environmental friendly. However, truly sustainable aquaculture will only be attainable when the balance between food security, economic benefit, social benefit, and a reduction of environmental impact is achieved. Figure 16 below shows the steps involved in best manage‐ ment practices in shrimp aquaculture farm.

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs) http://dx.doi.org/10.5772/57471 49

Aquaculture Impacts o n Habitat & BMPs Ozbay e t al. | **38**

 **Figure 16. a.** Clean and dried pond before start; **b.** Water quality monitoring; **c.** Water drained into treatment ponds; **d.** Aeration in culturing period using paddle wheel aerators; **e.** Shrimp health sampling with a cast net; **f.** Shrimp monitoring with a lift net; and **g.** Collected specimens are assessed for growth and survival rate. **Figure 16.** a. Clean and dried pond before start; b. Water quality monitoring; c. Water drained into treatment ponds; d. Aeration in culturing period using paddle wheel aerators; e. Shrimp health sampling with a cast net; f. Shrimp moni‐ toring with a lift net; and g. Collected specimens are assessed for growth and survival rate.

#### *In recent years aquaculture has gone through the "blue revolution" in which there has been rapid growth worldwide in aquaculture production of both fresh and saltwater fish and shellfish species. In part this is due to the fact that the natural fisheries are*  **6. Final remarks**

**6. Final Remarks** 

friendly practices. Three year GAP or CoC certificates are issued by the Thailand DOF to

Shrimp culture systems in Thailand also have a traceability system from farm to product which initially started as a form of hatchery management. Some hatcheries complied with bio-secure systems to ensure that larvae produced are healthy and viable before selling to grow-out farmers. Hatcheries must provide Fry Movement Documents (FMD) to their customers to indicate the number of fry that a farmer purchases in addition to other hatchery information since this document is checked if any problems occur during growout. Shrimp farmers must also provide Movement Documents (MD) which indicate the weight of shrimp in the shipment in addition to other farm information to processing plants or their customers. A DOF officer checks MD, Hazard Analysis and Critical Control Point (HACCP), GMP, and product quality at the processing plant before issuing product health

Moreover, many policies and projects are established for sustainable aquaculture sup‐ port. The agencies involved at the national level include, the Department of Fisheries, Pollution Control Department and Department of Marine and Costal Resources, while there are Provincial government and Local Administrative Organization involve at local level. Water quality testing program pond and discharge water responsible by DOF and water quality in natural water responsible by Pollution Control Department, etc. Mangrove rehabitation projects are established by the national and local government sectors, private sector, and Non-Governmental Organizations (NGOs) to increase mangrove forest area along the costal zones. Thailand also supports Non Illegal Unreported Unregulated Fishing (Non-IUU) and issued several programs for fish resource conservation, which include combatting IUU fishing, prohibiting certain fishing gears within spawning season, and expanding fish conservation areas. Although wild fisheries are not a part of the discus‐ sion in this chapter, it does play a part serving as a source of fish meal industry which is used in aquaculture feed. Therefore, control of IUU and certain fishing gear, will support

In conclusion, fisheries production in Thailand has decreased while aquaculture production has increased and plays a vital role for providing a high protein food source for economic development in the future. Aquaculture in Thailand evolved from traditional practice to science-based due to a number of policies and regulations put in the place to sustain both the aquaculture industry and the environment. Shrimp aquaculture in Thailand is an excellent example of why sustainable aquaculture practices are necessary and how they have become implemented. With the establishment of GAP and CoC, Thailand has ensured that shrimp farming results in production of a high quality product, safe from chemical residues, that is environmental friendly. However, truly sustainable aquaculture will only be attainable when the balance between food security, economic benefit, social benefit, and a reduction of environmental impact is achieved. Figure 16 below shows the steps involved in best manage‐

shrimp farms after they meet qualifications and comply with annual surveillance.

certificates.

48 Sustainable Aquaculture Techniques

sustainable aquaculture.

ment practices in shrimp aquaculture farm.

*population and an increase in demand for high protein sources of seafood. In the past, aquaculture has been demonized for destruction of mangroves worldwide for shrimp production as well as causing potential eutrophication through unwelcomed discharges of nutrient rich effluents.*  In recent years aquaculture has gone through the "blue revolution" in which there has been rapid growth worldwide in aquaculture production of both fresh and saltwater fish and shellfish species. In part this is due to the fact that the natural fisheries are close to their maximum sustainable yield. However, this rapid growth in aquaculture may also be attributed to the ever increasing world population and an increase in demand for high protein sources

*close to their maximum sustainable yield. However, this rapid growth in aquaculture may also be attributed to the ever increasing world* 

of seafood. In the past, aquaculture has been demonized for destruction of mangroves worldwide for shrimp production as well as causing potential eutrophication through unwelcomed discharges of nutrient rich effluents.

of chemicals used, and as a result, regulations cannot truly be effective. Furthermore, it is difficult to make correlations of aquaculture effluents to environmental impacts without ac‐ curate records. The main goals of effluent management or, more often referred to as best management practices, are to minimize impacts to the environment while maintaining pro‐ ductivity. Fortunately, most of these strategies are as beneficial to the aquaculturists/ farm‐ ers as they are to the environment. Both production costs and effluent can be reduced by using stock-specific feeds applied in smaller quantities several times a day, good aeration, improved husbandry practices, and paying good attention not to exceed to the carrying ca‐ pacity of the system. By lowering concentrations of phytoplankton, savings on herbicides and aeration are inevitable. Limited water exchange, integrated aquaculture, and good mon‐

Impacts of Aquaculture on Habitats and Best Management Practices (BMPs)

http://dx.doi.org/10.5772/57471

51

The authors would like to thank Dr. Karuna Chintapenta, Brian Reckenbeil, Kris Roeske, and Cory Janiak for their editorial assistance and review of the chapter. The authors would also like to thank Dr. Claude Boyd for the resources and guidance he provided both authors for their research and professional development. Some of the projects discussed in this chapter were funded by SRAC, USDA-NIFA, USDA Evans-Allen, NSF-EPSCOR, AU, DSU, and

and Taworn Thunjai2

2 Department of Fisheries, Kasetsart University, Ladyao, Jatujak, Bangkok, Thailand

1 Department of Agriculture and Natural Resources, Delaware State University, Dover, USA

[1] United Nations Food and Agriculture Organization. UNFAO: 2009. How to Feed the World 2050. High-Level Expert Forum. Global agriculture towards 2050. http:// www.fao.org/fileadmin/templates/wsfs/docs/Issues (accessed 10 September 2013).

[2] University of Maryland Medical Center. UMD: 2013. Omega-3 fatty acids. Overview. http://umm.edu/health/medical/altmed/supplement/omega3-fatty-acids (accessed 3

itoring are further best management practices measures.

**Acknowledgements**

Government of Thailand.

, Grant Blank1

**Author details**

Gulnihal Ozbay1

**References**

October 2013).

With increased environmental awareness and the general populations increased concern over its food sourcing, aquaculture has stepped up to the proverbial plate to try and fulfill the worlds seafood demands through increased production while trying to maintain more environmen‐ tally friendly practices of culturing fish through many technological advancements. Unfortu‐ nately, aquaculture has not yet truly reached its sustainability goal. However, in addition to much technological advancement, aquaculture has begun to incorporate best management practices to create a more environmentally friendly way of producing fish. In this chapter we have gone over several areas associated with BMPs and described them with regard to how their incorporation can impact or reduce the impacts of aquaculture on the environment. Many of the BMPs discussed are simple and rely on common sense approaches to nutrient problems. Others are more technologically advanced and require additional components and or descrip‐ tions that are beyond the scope of this chapter.

In the end we are all trying to get to a point at which aquaculture can be considered a sustain‐ able farming entity so that its impacts are minimal at best to the surrounding environment, there is a continuous supply of food, and it is profitable for all of those who are involved. As we consider moving ahead we must continue to remember that the world's resources are there for all and we want to maintain them for future generations to come. Again, we quote Costa-Pierce (2002) in suggesting there has to be a behavioral shift in humans rather than technology in order for aquaculture to become truly sustainable.

#### **7. Technical summary**

Tremendous efforts have been made to improve aquaculture farm practices through disease prevention and treatment, planning and management of facilities, feeding, and advances in aquaculture technology and sustainable practices. However, the industry is not without its issues and faults. Although significant accomplishments have been made in minimizing the negative impacts of aquaculture operations on the environment, it is not reached sustaina‐ bility worldwide. Further efforts ranging from husbandry practices to policy and regula‐ tions are essential to ensure the sustainability of aquaculture on a global scale. As aquaculture moves from feeding millions to billions of people in the last century, intensive culture practices have become common and require better management and monitoring ef‐ forts. Intensive production of fish farming requires significant inputs of nutrients in the form of inorganic fertilizers or feeds. Of these inputs, typically only 25% of the chemical con‐ stituents of the feed are assimilated into fish biomass while the rest is released into the water as metabolic wastes. In pond culture, fish are usually harvested after draining the pond par‐ tially or fully. The waste water expelled from these ponds into watershed, laden with organ‐ ic matter and nutrients, concerns regulatory agencies as a point-source of pollution. In addition, in most countries, including the United States, statistics are lacking on the amounts of chemicals used, and as a result, regulations cannot truly be effective. Furthermore, it is difficult to make correlations of aquaculture effluents to environmental impacts without ac‐ curate records. The main goals of effluent management or, more often referred to as best management practices, are to minimize impacts to the environment while maintaining pro‐ ductivity. Fortunately, most of these strategies are as beneficial to the aquaculturists/ farm‐ ers as they are to the environment. Both production costs and effluent can be reduced by using stock-specific feeds applied in smaller quantities several times a day, good aeration, improved husbandry practices, and paying good attention not to exceed to the carrying ca‐ pacity of the system. By lowering concentrations of phytoplankton, savings on herbicides and aeration are inevitable. Limited water exchange, integrated aquaculture, and good mon‐ itoring are further best management practices measures.

#### **Acknowledgements**

of seafood. In the past, aquaculture has been demonized for destruction of mangroves worldwide for shrimp production as well as causing potential eutrophication through

With increased environmental awareness and the general populations increased concern over its food sourcing, aquaculture has stepped up to the proverbial plate to try and fulfill the worlds seafood demands through increased production while trying to maintain more environmen‐ tally friendly practices of culturing fish through many technological advancements. Unfortu‐ nately, aquaculture has not yet truly reached its sustainability goal. However, in addition to much technological advancement, aquaculture has begun to incorporate best management practices to create a more environmentally friendly way of producing fish. In this chapter we have gone over several areas associated with BMPs and described them with regard to how their incorporation can impact or reduce the impacts of aquaculture on the environment. Many of the BMPs discussed are simple and rely on common sense approaches to nutrient problems. Others are more technologically advanced and require additional components and or descrip‐

In the end we are all trying to get to a point at which aquaculture can be considered a sustain‐ able farming entity so that its impacts are minimal at best to the surrounding environment, there is a continuous supply of food, and it is profitable for all of those who are involved. As we consider moving ahead we must continue to remember that the world's resources are there for all and we want to maintain them for future generations to come. Again, we quote Costa-Pierce (2002) in suggesting there has to be a behavioral shift in humans rather than technology

Tremendous efforts have been made to improve aquaculture farm practices through disease prevention and treatment, planning and management of facilities, feeding, and advances in aquaculture technology and sustainable practices. However, the industry is not without its issues and faults. Although significant accomplishments have been made in minimizing the negative impacts of aquaculture operations on the environment, it is not reached sustaina‐ bility worldwide. Further efforts ranging from husbandry practices to policy and regula‐ tions are essential to ensure the sustainability of aquaculture on a global scale. As aquaculture moves from feeding millions to billions of people in the last century, intensive culture practices have become common and require better management and monitoring ef‐ forts. Intensive production of fish farming requires significant inputs of nutrients in the form of inorganic fertilizers or feeds. Of these inputs, typically only 25% of the chemical con‐ stituents of the feed are assimilated into fish biomass while the rest is released into the water as metabolic wastes. In pond culture, fish are usually harvested after draining the pond par‐ tially or fully. The waste water expelled from these ponds into watershed, laden with organ‐ ic matter and nutrients, concerns regulatory agencies as a point-source of pollution. In addition, in most countries, including the United States, statistics are lacking on the amounts

unwelcomed discharges of nutrient rich effluents.

50 Sustainable Aquaculture Techniques

tions that are beyond the scope of this chapter.

in order for aquaculture to become truly sustainable.

**7. Technical summary**

The authors would like to thank Dr. Karuna Chintapenta, Brian Reckenbeil, Kris Roeske, and Cory Janiak for their editorial assistance and review of the chapter. The authors would also like to thank Dr. Claude Boyd for the resources and guidance he provided both authors for their research and professional development. Some of the projects discussed in this chapter were funded by SRAC, USDA-NIFA, USDA Evans-Allen, NSF-EPSCOR, AU, DSU, and Government of Thailand.

#### **Author details**

Gulnihal Ozbay1 , Grant Blank1 and Taworn Thunjai2


#### **References**


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**Chapter 2**

**Development of Freshwater Native Species with**

Aquaculture is an activity practiced by Chinese people since 2800 B.C. The first culture species were the carp (*Cyprinus carpio*) and mullet (*Mugil cephalus*), the first documented knowledge about fish culture in captivity belong to the carp. This activity has been supporting human demands for fish products for centuries and now is an important worldwide industry. Over the years this practice has become more technical with the objective to make the work easily but mainly in order to increase production. Nowadays this activity has grown to an entire industry that handles both supplements as the product itself. Global production from aqua‐ culture now supplies one third of seafood consumed worldwide. With this massive increase in world production the current aquaculture industry is one of the fastest growing sectors in food production [1]. However, this rapid growth in the aquaculture industry has generated ecological damage due to a huge extractive use of water, land, and feeds. Besides, is important to consider that these requirements are associated to another impacts such as; polluting, salinization of soils, nutrient-loading, clearing of natural habitat, overexploit of ground water reserves, introduction and transmission of diseases [2]. At this respect Bailey [3] establish a new term "blue revolution", which describes the expansion of fish-farming in tropical regions, according to this idea aquaculture must provide huge quantities of fish and help to solving problems of world food security and alleviating poverty. However, production increase in aquaculture demands feeds, energy for the cultured species and almost always is obtained through catch, so the fastest growing sectors in food production threatens its ability to continue to provide increasing yields in a sustainable manner, and concerns with the resulting from

fish-farming have led to calls for the "greening of the blue revolution" [4].

© 2014 Garcia-Trejo et al.; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use,

distribution, and reproduction in any medium, provided the original work is properly cited.

**Aquacultural Potential**

http://dx.doi.org/10.5772/57215

**1. Introduction**

Fernando Garcia-Trejo, Silvia Hurtado-Gonzalez, Genaro M. Soto-Zarazua and P. J Gutierrez-Yurrita

Additional information is available at the end of the chapter


## **Development of Freshwater Native Species with Aquacultural Potential**

Fernando Garcia-Trejo, Silvia Hurtado-Gonzalez, Genaro M. Soto-Zarazua and P. J Gutierrez-Yurrita

Additional information is available at the end of the chapter

http://dx.doi.org/10.5772/57215

#### **1. Introduction**

[195] Villalón JR. Practical Manual for Semi-intensive Commercial Production of Marine Shrimp. Texas A&M University Sea Grant College Program; 1991. TAMU-SG-91-501.

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College Station, Texas, USA. p1-104.

66 Sustainable Aquaculture Techniques

cessed 10 October 2013).

kok and FAO, Rome, Italy.

Aquaculture is an activity practiced by Chinese people since 2800 B.C. The first culture species were the carp (*Cyprinus carpio*) and mullet (*Mugil cephalus*), the first documented knowledge about fish culture in captivity belong to the carp. This activity has been supporting human demands for fish products for centuries and now is an important worldwide industry. Over the years this practice has become more technical with the objective to make the work easily but mainly in order to increase production. Nowadays this activity has grown to an entire industry that handles both supplements as the product itself. Global production from aqua‐ culture now supplies one third of seafood consumed worldwide. With this massive increase in world production the current aquaculture industry is one of the fastest growing sectors in food production [1]. However, this rapid growth in the aquaculture industry has generated ecological damage due to a huge extractive use of water, land, and feeds. Besides, is important to consider that these requirements are associated to another impacts such as; polluting, salinization of soils, nutrient-loading, clearing of natural habitat, overexploit of ground water reserves, introduction and transmission of diseases [2]. At this respect Bailey [3] establish a new term "blue revolution", which describes the expansion of fish-farming in tropical regions, according to this idea aquaculture must provide huge quantities of fish and help to solving problems of world food security and alleviating poverty. However, production increase in aquaculture demands feeds, energy for the cultured species and almost always is obtained through catch, so the fastest growing sectors in food production threatens its ability to continue to provide increasing yields in a sustainable manner, and concerns with the resulting from fish-farming have led to calls for the "greening of the blue revolution" [4].

© 2014 Garcia-Trejo et al.; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

The situation in México is not an exception; the expansion of aquaculture has been accompa‐ nied by degradation of the natural environment, especially on marine aquaculture [5]. As it happens in the world directly impacts of fisheries and aquaculture are:

determined in order to stablish guidelines for its management and to preserve its population. In this work population structure and dynamics were getting and trophic and ecophysiological responses to fluctuations in environmental factors were also identified in order to have the possibility of laboratory reproduction and growth. On the other hand, native mojarra *Herinchthys cyanogutattus* founded on the basin Pánuco river. In this case the purpose was to evaluate its useful in fishery and later in the aquaculture. The work consisted of two stages: First, the characterization of their environment in order to locate stable populations of the mojarra and to characterize ecologically its habitat. Second, the mojarra was moved to the laboratory to try different forms of acclimatization for its future use giving them tried food. Once acclimated, the stock was use to carried out density studies of individuals for culture (capacity of load), as well as of ideal thermal for its production. Finally, *Procambarus digueti* which faces severe ecological problems (over fishing, no control of heights neither of sexes, there is not articulated extraction methods neither fishing seasons and restrains), since they are captured as food and as curative remedies from pre-Hispanic eras. To this situation the strong environmental pressure is added by the disturbance of their habitat, what has carried a decrease in numerical abundance. The objective of this work was determined the optimum cultivation conditions with respect to the load capacity and diet in the growth of *P. digueti* in intensive production systems. The controlled production of this specie will reduce the fishing pressure and it will be able to serve to repopulate the sites where may have been decline the

Development of Freshwater Native Species with Aquacultural Potential

http://dx.doi.org/10.5772/57215

69

To successfully achieve the cultivation of a native species, compared to the technological advantages offered by more exotic trading requires knowledge of the biology, ecology and aquaculture potential (ability to live at high densities, accept food encapsulation, and with‐ stand high environmental variations) of each species. If aquaculture potential studies are performed with ecophysiological and bioenergetics approach may be developed predictive models of how to develop a population under different environmental factors, and even

Studies on the biological aspects of fish typically focus on species that currently have com‐ mercial value, causing species that lack such market value to be ignored. This is the case of several freshwater fish, specifically of several members of the Goodeidae family. This is a diversified and small family of cyprinodontoid fish, confined to the central plateau of Mexico where its dispersion center lies in the well-isolated Lerma basin. Four species of the Godeidae family have been reported in Querétaro: three species are distributed widely in the Lerma basin (*Goodea atripinis, Xenotoca variata, Goodea gracilis*), and one species (*Girardinichthys multiradiatus*) can only be found in one body of water in the municipality of Amealco [14]. Scientific knowledge about it focuses on sexual dimorphism, peculiar courtship rituals, and viviparity [15], taxonomic aspects [16, 17], ethology [18], biology [19], and trophic ecology [20].

natural population.

develop experimentally testable hypotheses [13].

**2. The experience with Girardinichthys multiradiatus**


It is clear that current food productions techniques in aquaculture are good just under financial point of view but always leave aside the environment aspects. The relationship between aquaculture and environment is complex specifically the biodiversity topic. Many examples of positive and negative impacts have been documented, however until now there is no solution which allows the development of a relationship between food production and the environment. This solution must be adopting a new paradigm based in ecological concepts of extreme resource efficiency and the closing of nutrient and waste cycles, resource-use optimi‐ zation [6]. As can be seen, this is not an easy task since it requires the creation of multidisci‐ plinary teams which can see the problem holistically and try to give a solution that benefits all parties involved in the process. The efforts and the perception of the environment are different between countries, but ultimately the problem to be addressed holistically. However, studies on fish typically focus on species that currently have commercial value, causing species that lack such market value to be ignored. This is the case of several freshwater native species, which can be founded in central and South America. Some attempts to cultivate native species have occurred mainly in areas or rural communities, where in addition to enhance the conservation of species protein contributes to the diet of the community [7]. One of the most interesting case studies in Mexico is growing "white fish" (*Chirostoma estor*) with the aim repopulate some areas where the introduction of their populations has been declined [8]. Most documented is that of the native Central American cichlid (*Cichlasoma urophthalmus*), of which there have been many studies to support its culture [9]. In southern region some attempts to grow some silversides in Argentina (*Odontestes Basilichthys*), some Characidae family members have been grown in Brazil and more recently three species of carnivorous cichlids aquarium purposes. In Peru it has favored the cultivation of called piracucu (*Arapaima gigas*), one of the largest fish of fresh water. Possibly the Cichlidae family members are those that show the greatest potential for cultivation [10, 11].

The main purpose of this chapter is to show the experience of three studies with native species; one refers to a small native species located in the state of Querétaro and with a great ecological importance, *Girardinichthys multiradiatus* [12]. The study of this fish focused on the description of its habitat throughout a hydrologic cycle in which ecophysiological responses were determined in order to stablish guidelines for its management and to preserve its population. In this work population structure and dynamics were getting and trophic and ecophysiological responses to fluctuations in environmental factors were also identified in order to have the possibility of laboratory reproduction and growth. On the other hand, native mojarra *Herinchthys cyanogutattus* founded on the basin Pánuco river. In this case the purpose was to evaluate its useful in fishery and later in the aquaculture. The work consisted of two stages: First, the characterization of their environment in order to locate stable populations of the mojarra and to characterize ecologically its habitat. Second, the mojarra was moved to the laboratory to try different forms of acclimatization for its future use giving them tried food. Once acclimated, the stock was use to carried out density studies of individuals for culture (capacity of load), as well as of ideal thermal for its production. Finally, *Procambarus digueti* which faces severe ecological problems (over fishing, no control of heights neither of sexes, there is not articulated extraction methods neither fishing seasons and restrains), since they are captured as food and as curative remedies from pre-Hispanic eras. To this situation the strong environmental pressure is added by the disturbance of their habitat, what has carried a decrease in numerical abundance. The objective of this work was determined the optimum cultivation conditions with respect to the load capacity and diet in the growth of *P. digueti* in intensive production systems. The controlled production of this specie will reduce the fishing pressure and it will be able to serve to repopulate the sites where may have been decline the natural population.

The situation in México is not an exception; the expansion of aquaculture has been accompa‐ nied by degradation of the natural environment, especially on marine aquaculture [5]. As it

It is clear that current food productions techniques in aquaculture are good just under financial point of view but always leave aside the environment aspects. The relationship between aquaculture and environment is complex specifically the biodiversity topic. Many examples of positive and negative impacts have been documented, however until now there is no solution which allows the development of a relationship between food production and the environment. This solution must be adopting a new paradigm based in ecological concepts of extreme resource efficiency and the closing of nutrient and waste cycles, resource-use optimi‐ zation [6]. As can be seen, this is not an easy task since it requires the creation of multidisci‐ plinary teams which can see the problem holistically and try to give a solution that benefits all parties involved in the process. The efforts and the perception of the environment are different between countries, but ultimately the problem to be addressed holistically. However, studies on fish typically focus on species that currently have commercial value, causing species that lack such market value to be ignored. This is the case of several freshwater native species, which can be founded in central and South America. Some attempts to cultivate native species have occurred mainly in areas or rural communities, where in addition to enhance the conservation of species protein contributes to the diet of the community [7]. One of the most interesting case studies in Mexico is growing "white fish" (*Chirostoma estor*) with the aim repopulate some areas where the introduction of their populations has been declined [8]. Most documented is that of the native Central American cichlid (*Cichlasoma urophthalmus*), of which there have been many studies to support its culture [9]. In southern region some attempts to grow some silversides in Argentina (*Odontestes Basilichthys*), some Characidae family members have been grown in Brazil and more recently three species of carnivorous cichlids aquarium purposes. In Peru it has favored the cultivation of called piracucu (*Arapaima gigas*), one of the largest fish of fresh water. Possibly the Cichlidae family members are those that show the

The main purpose of this chapter is to show the experience of three studies with native species; one refers to a small native species located in the state of Querétaro and with a great ecological importance, *Girardinichthys multiradiatus* [12]. The study of this fish focused on the description of its habitat throughout a hydrologic cycle in which ecophysiological responses were

happens in the world directly impacts of fisheries and aquaculture are:

**•** Introduction of nonnative fish species:

**•** Introduction of exogenous parasites:

**•** Overcollection of wild seed stock:

**•** Increase of interspecific competition:

greatest potential for cultivation [10, 11].

**•** Nutrient pollution:

**•** Habitat modification:

68 Sustainable Aquaculture Techniques

**•** Changes of food webs

To successfully achieve the cultivation of a native species, compared to the technological advantages offered by more exotic trading requires knowledge of the biology, ecology and aquaculture potential (ability to live at high densities, accept food encapsulation, and with‐ stand high environmental variations) of each species. If aquaculture potential studies are performed with ecophysiological and bioenergetics approach may be developed predictive models of how to develop a population under different environmental factors, and even develop experimentally testable hypotheses [13].

#### **2. The experience with Girardinichthys multiradiatus**

Studies on the biological aspects of fish typically focus on species that currently have com‐ mercial value, causing species that lack such market value to be ignored. This is the case of several freshwater fish, specifically of several members of the Goodeidae family. This is a diversified and small family of cyprinodontoid fish, confined to the central plateau of Mexico where its dispersion center lies in the well-isolated Lerma basin. Four species of the Godeidae family have been reported in Querétaro: three species are distributed widely in the Lerma basin (*Goodea atripinis, Xenotoca variata, Goodea gracilis*), and one species (*Girardinichthys multiradiatus*) can only be found in one body of water in the municipality of Amealco [14]. Scientific knowledge about it focuses on sexual dimorphism, peculiar courtship rituals, and viviparity [15], taxonomic aspects [16, 17], ethology [18], biology [19], and trophic ecology [20].

#### **2.1. Environmental conditions**

*G. multiradiatus* was founded on San Martín Dam, located at 60 km south of Queretaro city, near to Amealco municipality (100° 09' 43'' W; 20° 15' 02'' N), at 2600 meters above sea level. The climate is subhumid with summer rains (Cw1) with an average temperature of 15.1°C, the months of May and June are those with the highest temperatures. The average annual rainfall is 659.5 mm, occurring mainly during the summer [21]. The main contribution to the dam water is from rain. Sampling was made over a full hydrological cycle (one year, beginning in February) in which the *G. multiradiatus* population was monitored once every two months, at the same time physical factors were measure (T°, pH, dissolved O2, turbidity, depth). The physicochemical parameters of water showed stable behavior during the studied hydrological cycle (pH = 7 to 9; dissolved oxygen = 6.5 to 7 ppm). On the other hand, the temperature showed significant variation, with the highest temperatures (20-25°C) recorded between April and August, with the lowest (10-18°C) recorded between October to February. Also, due to seasonal differences in water usage, the water level of the dam was low from April to August and high from October to March (Fig. 1).

calpique population of San Martín. The numbers in parentheses indicate the percentage of each size class of the total population obtained through a year. Two of these size classes were found only in laboratory studies due to their small sizes; these sizes were smaller than what the nets

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**Figure 2.** General structure of the population of San Martín mexcalpique. The numbers in parentheses indicate the

Figure 3 shows the bimonthly structure of the population of *G. multiradiatus* in San Martín and the seasonal pattern of population growth, demonstrated in Von Bertalanffy equation with L∞ = 47; K= 0.8870 and, t0 = -0.2103. The variations throughout the year are present in both, in the structure of the population and its growth rate, with the shorter pattern cohorts having a

To assess the daily feeding activity of the *G. multiraditus* in San Martín Dam samples were collected with spoon nets every four hours during a period of 24 hours (10:00, 14:00, 18:00, 22:00, 02:00 and, 06:00 hours). These catches allowed determining the feeding ecology of the species (feeding time, type of diet at different times of day, food components). The relative density in activity was measured using the catch per unit effort method (CPUE) based on the number of individuals caught by dragging. The fish were fixed in 70% alcohol and then transported to the laboratory (Nielsen et al., 1983). From 1022 stomachs analyzed, (1022), 18 food components were identified. The most abundant component found were insects (47%), especially the Diptera order, followed by detritus (24.0%) and Cladocera (17.5%), with the remaining components accounting for 10.7%. Unusual food components (less than 10% of the total), were only found at a specific times of the hydrological cycle, Table 1. The benthic review showed 20 components and trophic index was calculated indicating that *G. multiradiatus* is a

higher growth rate and no increase in length during the period of February to June.

percentage of each size class of the total population obtained through a year.

in situ could catch.

**2.3. Feeding habits**

**Figure 1.** Environmental parameters during a hydrological cycle in San Martín Dam.

#### **2.2. Population ecology**

According to the Cassie method, the population of *G. multiradiatus* consists of 12 classes, ranging from 8 to 48 mm standard length. Figure 2 shows the general structure of the mex‐ calpique population of San Martín. The numbers in parentheses indicate the percentage of each size class of the total population obtained through a year. Two of these size classes were found only in laboratory studies due to their small sizes; these sizes were smaller than what the nets in situ could catch.

**Figure 2.** General structure of the population of San Martín mexcalpique. The numbers in parentheses indicate the percentage of each size class of the total population obtained through a year.

Figure 3 shows the bimonthly structure of the population of *G. multiradiatus* in San Martín and the seasonal pattern of population growth, demonstrated in Von Bertalanffy equation with L∞ = 47; K= 0.8870 and, t0 = -0.2103. The variations throughout the year are present in both, in the structure of the population and its growth rate, with the shorter pattern cohorts having a higher growth rate and no increase in length during the period of February to June.

#### **2.3. Feeding habits**

**2.1. Environmental conditions**

70 Sustainable Aquaculture Techniques

from October to March (Fig. 1).

**2.2. Population ecology**

**Figure 1.** Environmental parameters during a hydrological cycle in San Martín Dam.

According to the Cassie method, the population of *G. multiradiatus* consists of 12 classes, ranging from 8 to 48 mm standard length. Figure 2 shows the general structure of the mex‐

*G. multiradiatus* was founded on San Martín Dam, located at 60 km south of Queretaro city, near to Amealco municipality (100° 09' 43'' W; 20° 15' 02'' N), at 2600 meters above sea level. The climate is subhumid with summer rains (Cw1) with an average temperature of 15.1°C, the months of May and June are those with the highest temperatures. The average annual rainfall is 659.5 mm, occurring mainly during the summer [21]. The main contribution to the dam water is from rain. Sampling was made over a full hydrological cycle (one year, beginning in February) in which the *G. multiradiatus* population was monitored once every two months, at the same time physical factors were measure (T°, pH, dissolved O2, turbidity, depth). The physicochemical parameters of water showed stable behavior during the studied hydrological cycle (pH = 7 to 9; dissolved oxygen = 6.5 to 7 ppm). On the other hand, the temperature showed significant variation, with the highest temperatures (20-25°C) recorded between April and August, with the lowest (10-18°C) recorded between October to February. Also, due to seasonal differences in water usage, the water level of the dam was low from April to August and high

> To assess the daily feeding activity of the *G. multiraditus* in San Martín Dam samples were collected with spoon nets every four hours during a period of 24 hours (10:00, 14:00, 18:00, 22:00, 02:00 and, 06:00 hours). These catches allowed determining the feeding ecology of the species (feeding time, type of diet at different times of day, food components). The relative density in activity was measured using the catch per unit effort method (CPUE) based on the number of individuals caught by dragging. The fish were fixed in 70% alcohol and then transported to the laboratory (Nielsen et al., 1983). From 1022 stomachs analyzed, (1022), 18 food components were identified. The most abundant component found were insects (47%), especially the Diptera order, followed by detritus (24.0%) and Cladocera (17.5%), with the remaining components accounting for 10.7%. Unusual food components (less than 10% of the total), were only found at a specific times of the hydrological cycle, Table 1. The benthic review showed 20 components and trophic index was calculated indicating that *G. multiradiatus* is a

**Figure 3.** Bimonthly structure of the population of G. multiradiatus in San Martin and the curves of growth with the von Bertalanffy model for highly seasonal cycles. Upon reaching the asymptotic curve determines the final class of each age cohort.

polytrophic specie (H ≠ 0). The maximum numbers of categories found in their stomachs were eight while minimum was two. Circadian sampling showed that this specie is polytrophic with two daily feeding periods (5:00 to 8:00 and 14:00 to 18:00 hours).

energy lost as nitrogenous and other waste compounds excreted in the urine, and F is the unabsorbed energy voided with the faeces (Bolduc et al., 2002; Bradshaw, 2003). All variables expressed in calories per gram of dry weight (cal/g).The ratio used to transform measured aerobic metabolism into calories was the standard oxycaloric coefficient for fish which mainly excrete N-NH4 (Qox = 3.20 cal mg-1 O2). Nitrogen excretion was estimated using literary references, taking into consideration the type of fish, size, feeding habits, and physiological

**Table 1.** Occurrence of food components (N = number sampled, n = number of organisms that have the category, %

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Physiological experiments showed higher energy expenditures in August with values of 2500 cal/g and minimal values for December with 200 cal/g. The increased energy expenditure was found in the early hours of the day (daylight hours) and then declined, reaching minimum values at night, with the exception of October, which displayed an inverse pattern. Calori‐ metric analysis did not show statistically significant difference between the energy provided by sex (p> 0.05). Main food energy intake was 4.8 ± 0.3 Kcal g-1 of dry weight, with the total weight of the mexcalpique consisting of, on average, 85.49 ± 2.49% organic matter, and 14.50 ± 2.49% mineral matter. By replacing the caloric values in the energy balance equation, was determined that *G. multiradiatus* uses approximately 81% of the energy consumed in the production of tissue and gametes (P and G), respiration process spent 5.7% (ER) and the rest 13.3% is invested in maintenance (EU and F). Multivariate analysis of environmental factors on the metabolism, showed no significant differences, however the temperature showed the

status [24].

occurrence rate) by sex.

lowest value of significance (p = 0.08).

#### **2.4. Bioenergetic**

To quantify the aerobic metabolism and nitrogen excretion, animals were placed in a semi closed system with (0.5L) respirometric chambers, using a method which assumes that the reduction of oxygen and the increase of nitrogen in the chamber depend on the weight of the animal, the volume of water, the period of time in which no water circulated in the chamber and the ambient temperature [22]. After each cycle, sample was oven-dried in an electric oven between 70-80°C until the samples had constant weight. From each composite sample 2 g were measured and taken as analytical sample; the samples were digested with concentrated nitric acid. The determination of the percentage proximate composition was chemically analyzed according to the method of analysis described by the Association of Official Analytical Chemist [23]. While other 2 g sample tissue were combusted in a Parr bomb calorimeter to obtain oxycalorific measurements. The flow of energy that was used to determine the energy efficiency and assimilation is show in the next equation:

C = P + G +ER + EU + F

Where; C is the total energy content of food consumed, P and G are the energy equivalents of somatic and gonadal growth respectively, ER is the energy utilized in respiration, EU is the Development of Freshwater Native Species with Aquacultural Potential http://dx.doi.org/10.5772/57215 73


**Table 1.** Occurrence of food components (N = number sampled, n = number of organisms that have the category, % occurrence rate) by sex.

polytrophic specie (H ≠ 0). The maximum numbers of categories found in their stomachs were eight while minimum was two. Circadian sampling showed that this specie is polytrophic with

**Figure 3.** Bimonthly structure of the population of G. multiradiatus in San Martin and the curves of growth with the von Bertalanffy model for highly seasonal cycles. Upon reaching the asymptotic curve determines the final class of

To quantify the aerobic metabolism and nitrogen excretion, animals were placed in a semi closed system with (0.5L) respirometric chambers, using a method which assumes that the reduction of oxygen and the increase of nitrogen in the chamber depend on the weight of the animal, the volume of water, the period of time in which no water circulated in the chamber and the ambient temperature [22]. After each cycle, sample was oven-dried in an electric oven between 70-80°C until the samples had constant weight. From each composite sample 2 g were measured and taken as analytical sample; the samples were digested with concentrated nitric acid. The determination of the percentage proximate composition was chemically analyzed according to the method of analysis described by the Association of Official Analytical Chemist [23]. While other 2 g sample tissue were combusted in a Parr bomb calorimeter to obtain oxycalorific measurements. The flow of energy that was used to determine the energy

Where; C is the total energy content of food consumed, P and G are the energy equivalents of somatic and gonadal growth respectively, ER is the energy utilized in respiration, EU is the

two daily feeding periods (5:00 to 8:00 and 14:00 to 18:00 hours).

efficiency and assimilation is show in the next equation:

**2.4. Bioenergetic**

each age cohort.

72 Sustainable Aquaculture Techniques

C = P + G +ER + EU + F

energy lost as nitrogenous and other waste compounds excreted in the urine, and F is the unabsorbed energy voided with the faeces (Bolduc et al., 2002; Bradshaw, 2003). All variables expressed in calories per gram of dry weight (cal/g).The ratio used to transform measured aerobic metabolism into calories was the standard oxycaloric coefficient for fish which mainly excrete N-NH4 (Qox = 3.20 cal mg-1 O2). Nitrogen excretion was estimated using literary references, taking into consideration the type of fish, size, feeding habits, and physiological status [24].

Physiological experiments showed higher energy expenditures in August with values of 2500 cal/g and minimal values for December with 200 cal/g. The increased energy expenditure was found in the early hours of the day (daylight hours) and then declined, reaching minimum values at night, with the exception of October, which displayed an inverse pattern. Calori‐ metric analysis did not show statistically significant difference between the energy provided by sex (p> 0.05). Main food energy intake was 4.8 ± 0.3 Kcal g-1 of dry weight, with the total weight of the mexcalpique consisting of, on average, 85.49 ± 2.49% organic matter, and 14.50 ± 2.49% mineral matter. By replacing the caloric values in the energy balance equation, was determined that *G. multiradiatus* uses approximately 81% of the energy consumed in the production of tissue and gametes (P and G), respiration process spent 5.7% (ER) and the rest 13.3% is invested in maintenance (EU and F). Multivariate analysis of environmental factors on the metabolism, showed no significant differences, however the temperature showed the lowest value of significance (p = 0.08).

#### **3.** *Herinchthys cyanogutattus*

Texas Cichlids were formerly given the scientific name of *Cichlasoma cyanoguttatum*, but are now known by the name *Herichthys cyanoguttatus*. The genus *Herichthys* has been through several changes, and currently consists of nine species, native to lakes and rivers in south Texas and northern Mexico, making them the most northern naturally occurring species of cichlid in the world. It's the only native cichlid in the US and amongst the first cichlids imported to Europe, having first been imported in 1912. This species has also been introduced into areas they are not indigenous to, sometimes on purpose, but often by aquarium owners desperate to divest themselves of a fish the can no longer take care of. The areas of non-indigenous populations range from northern Texas to Florida, where it has become a popular game fish. This is due to having a tasty flavor similar to that of their distant relative, Tilapia.

In Mexico this species is called "Mojarra del norte" and It could be distinguished by a coupled of dark spots and a tiny blue circles on its sides. Adults show a olivaceus iridescent spots when viewed in the sun, there are also lines of the same color on the head, body and fins. During reproduction it is possible to see white region in the front part and a dark in the back especially in females, while males develop a prominent hump.

**Figure 4.** Environmental parameters tendency during an hydrologic cycle in Taxhido river.

determination and other group for an optimal density experiment.

Organisms were collected in Taxhido and then transport to laboratory and maintained for acclimation during a month. After this time a group was used to optimal temperature

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The fish were placed in 15 rectangular glass tanks distributed using a Latin square scheme in order to avoid spatial effects. The tanks´ dimensions were of 0.4.5 m depth, 0.8 m wide and 0.3 m long, with a water storage capacity of 100 L. Five triplicated treatments with 15 organisms were applied using environmental temperature as a medium value, so the treatments were; 24, 26, 28, 30, and 32°C. The handling of tanks involves, the feces removal and partial water change (30%) weekly. The fish were feeding with a commercial diet for Tilapia (Api-Tilapia 1, maltaCleyton® with 50% protein, 12% lipid, 13% ash, 3% fiber, 12 moisture) throughout the experiment. Feeding frequency was adjusted to three provisions offered three times daily starting at 8 AM, 1 PM and 6 PM. The results show that 28°C., is the best temperature for *H.*

Once the temperature was determined a similar experiment was carry out, but in this case the variable was the density. Five densities were probed, T1= 5, T2=10, T3=15, T4=20 ind/per aquarium. It is important to consider that control temperature was implemented in each aquarium in order to avoid an effect for spatial distribution. The results show that 15 individ‐

**3.3. Laboratory studies**

*3.3.1. Optimal temperature*

*cyanoguttatus*, fig. 5.

*3.3.2. Optimal density*

uals is the best density for *H. cyanoguttatus*, table 2.

#### **3.1. Biology**

This fish could live in a wide range of temperature, between 5° and 30°C., [25, 26]. Trophic spectrum show variations between each population according to the region but in general is consider an omnivorous fish [27]. Many studies have described aspects of reproduction; the most relevant aspect is the monogamous behavior, when a male select a coupled it becomes aggressive and territorial [28].

#### **3.2. Environmental conditions**

The first step in this research was to looking-for a population in order to do the ecological description of its habitat. H. *cyanoguttatus* was found in several places around Queretaro State, but only one was selected due to accessibility. This place is called Taxhido river and is located at 70km E, from the Queretaro capital 20° 35' 18''O and 99° 40' 47''N, the climate is subhumid with summer rains (Cw1) with an average temperature of 15.1°C, the months of May and June are those with the highest temperatures. The average annual rainfall is 659.5 mm, occurring mainly during the summer and the main contribution to the dam water is from a spring. Sampling was made over a full hydrological cycle (one year, beginning in February) in which the *H. cyanoguttatus* population was monitored once every two months, at the same time physical factors were measure (T°, pH, dissolved O2, turbidity, depth). The physicochemical parameters of water showed stable behavior during the studied hydrological cycle (pH = 7.4 to 8.2; dissolved oxygen = 4.5 to 8.3 ppm). On the other hand, the temperature was constant between 29 and 31°C., Fig. 4.

**Figure 4.** Environmental parameters tendency during an hydrologic cycle in Taxhido river.

#### **3.3. Laboratory studies**

**3.** *Herinchthys cyanogutattus*

74 Sustainable Aquaculture Techniques

Texas Cichlids were formerly given the scientific name of *Cichlasoma cyanoguttatum*, but are now known by the name *Herichthys cyanoguttatus*. The genus *Herichthys* has been through several changes, and currently consists of nine species, native to lakes and rivers in south Texas and northern Mexico, making them the most northern naturally occurring species of cichlid in the world. It's the only native cichlid in the US and amongst the first cichlids imported to Europe, having first been imported in 1912. This species has also been introduced into areas they are not indigenous to, sometimes on purpose, but often by aquarium owners desperate to divest themselves of a fish the can no longer take care of. The areas of non-indigenous populations range from northern Texas to Florida, where it has become a popular game fish.

This is due to having a tasty flavor similar to that of their distant relative, Tilapia.

in females, while males develop a prominent hump.

**3.1. Biology**

aggressive and territorial [28].

**3.2. Environmental conditions**

between 29 and 31°C., Fig. 4.

In Mexico this species is called "Mojarra del norte" and It could be distinguished by a coupled of dark spots and a tiny blue circles on its sides. Adults show a olivaceus iridescent spots when viewed in the sun, there are also lines of the same color on the head, body and fins. During reproduction it is possible to see white region in the front part and a dark in the back especially

This fish could live in a wide range of temperature, between 5° and 30°C., [25, 26]. Trophic spectrum show variations between each population according to the region but in general is consider an omnivorous fish [27]. Many studies have described aspects of reproduction; the most relevant aspect is the monogamous behavior, when a male select a coupled it becomes

The first step in this research was to looking-for a population in order to do the ecological description of its habitat. H. *cyanoguttatus* was found in several places around Queretaro State, but only one was selected due to accessibility. This place is called Taxhido river and is located at 70km E, from the Queretaro capital 20° 35' 18''O and 99° 40' 47''N, the climate is subhumid with summer rains (Cw1) with an average temperature of 15.1°C, the months of May and June are those with the highest temperatures. The average annual rainfall is 659.5 mm, occurring mainly during the summer and the main contribution to the dam water is from a spring. Sampling was made over a full hydrological cycle (one year, beginning in February) in which the *H. cyanoguttatus* population was monitored once every two months, at the same time physical factors were measure (T°, pH, dissolved O2, turbidity, depth). The physicochemical parameters of water showed stable behavior during the studied hydrological cycle (pH = 7.4 to 8.2; dissolved oxygen = 4.5 to 8.3 ppm). On the other hand, the temperature was constant

Organisms were collected in Taxhido and then transport to laboratory and maintained for acclimation during a month. After this time a group was used to optimal temperature determination and other group for an optimal density experiment.

#### *3.3.1. Optimal temperature*

The fish were placed in 15 rectangular glass tanks distributed using a Latin square scheme in order to avoid spatial effects. The tanks´ dimensions were of 0.4.5 m depth, 0.8 m wide and 0.3 m long, with a water storage capacity of 100 L. Five triplicated treatments with 15 organisms were applied using environmental temperature as a medium value, so the treatments were; 24, 26, 28, 30, and 32°C. The handling of tanks involves, the feces removal and partial water change (30%) weekly. The fish were feeding with a commercial diet for Tilapia (Api-Tilapia 1, maltaCleyton® with 50% protein, 12% lipid, 13% ash, 3% fiber, 12 moisture) throughout the experiment. Feeding frequency was adjusted to three provisions offered three times daily starting at 8 AM, 1 PM and 6 PM. The results show that 28°C., is the best temperature for *H. cyanoguttatus*, fig. 5.

#### *3.3.2. Optimal density*

Once the temperature was determined a similar experiment was carry out, but in this case the variable was the density. Five densities were probed, T1= 5, T2=10, T3=15, T4=20 ind/per aquarium. It is important to consider that control temperature was implemented in each aquarium in order to avoid an effect for spatial distribution. The results show that 15 individ‐ uals is the best density for *H. cyanoguttatus*, table 2.

**Figure 6.** Oxygen consumption in natural condition for *H. cyanogutattus*

**Figure 7.** Oxygen consumption under laboratory condition for *H. cyanogutattus*

**Figure 8.** Oxygen consumption for each temperature treatment at the end of the experiment.

founded at T3= 30° minimal at T2 =26° treatments.

consumption.

After three weeks in laboratory condition (acclimatization) oxygen consumption was meas‐ ured to know if a metabolism was changed. The results show that higher consumption was found at 15:00 and minimal during the morning so the fish did not show modification in oxygen

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Finally, oxygen consumption was measured for each of the temperature treatments in order to know in which an alteration occurs. The results show that maximum values for oxygen were

**Figure 5.** Humid weight behavior for the different temperature treatments


**Table 2.** add caption

#### *3.3.3. Bioenergetics*

Aerobic metabolism were determine in natural conditions with a semi closed system with (0.5L) respirometric chambers, using a method which assumes that the reduction of oxygen and the increase of nitrogen in the chamber depend on the weight of the animal, the volume of water, the period of time in which no water circulated in the chamber and the ambient temperature [22]. After each cycle, sample was oven-dried in an electric oven between 70-80°C until the samples had constant weight. From each composite sample 2 g were measured and taken as analytical sample; the samples were digested with concentrated nitric acid. The determination of the percentage proximate composition was chemically analyzed according to the method of analysis described by the Association of Official Analytical Chemist [23].

Physiological experiments showed higher oxygen consume at 15:00 hrs, while a minimum consumption was founded during the morning, Fig. 6.

**Figure 6.** Oxygen consumption in natural condition for *H. cyanogutattus*

**Performance parameters T1= 5 ind T2=10 ind T3=15 ind T4=20 ind**

Aerobic metabolism were determine in natural conditions with a semi closed system with (0.5L) respirometric chambers, using a method which assumes that the reduction of oxygen and the increase of nitrogen in the chamber depend on the weight of the animal, the volume of water, the period of time in which no water circulated in the chamber and the ambient temperature [22]. After each cycle, sample was oven-dried in an electric oven between 70-80°C until the samples had constant weight. From each composite sample 2 g were measured and taken as analytical sample; the samples were digested with concentrated nitric acid. The determination of the percentage proximate composition was chemically analyzed according to the method of analysis described by the Association of Official Analytical Chemist [23].

Physiological experiments showed higher oxygen consume at 15:00 hrs, while a minimum

consumption was founded during the morning, Fig. 6.

Initial number (n) 5 10 14 19 Final average number (n) 1 6 9 7 Survival rate (%) 26.66 56.66 61.7 38.88 Initial Total weight (g) 2.16 2.84 4.28 16.92 Initial individual average weight (g) 0.43 0.28 0.29 0.91 Final Total weight (g) 2.36 9.26 14.05 23.81 Final individual average weight (g) 0.59 1.09 1.49 2.05 Weight gain (%) 95.16 293.44 400.59 94.86

**Figure 5.** Humid weight behavior for the different temperature treatments

**Table 2.** add caption

76 Sustainable Aquaculture Techniques

*3.3.3. Bioenergetics*

After three weeks in laboratory condition (acclimatization) oxygen consumption was meas‐ ured to know if a metabolism was changed. The results show that higher consumption was found at 15:00 and minimal during the morning so the fish did not show modification in oxygen consumption.

**Figure 7.** Oxygen consumption under laboratory condition for *H. cyanogutattus*

Finally, oxygen consumption was measured for each of the temperature treatments in order to know in which an alteration occurs. The results show that maximum values for oxygen were founded at T3= 30° minimal at T2 =26° treatments.

**Figure 8.** Oxygen consumption for each temperature treatment at the end of the experiment.

#### **4.** *Procambarus diguetti*

The cambarids, known in Mexico as acociles (in Náhuatl), makaxil (in Mayan), chapos (in Purépecha), or freshwater crayfish, according to the region, are well known, and were regularly consumed by the Aztecs and other ethnic groups based around the Valle de Mexico already during prehispanic times [29]*. Procambarus digueti* is endemic to the Mexican Central-Occidental Plateau and is found only in certain parts of the Duero and Camécuaro rivers. The Duero River is 10 km long, whist the river Camécuaro is just 2 km long. The two rivers meet at Las Adjuntas. Furthermore, this species is known to occur in Lake Chapala, though samples were collected 40 to 50 years, so is believed to have naturally disappeared from some locations, though these local extinctions may in fact be unnatural This species is threatened by overexploitation, habitat destruction and degradation, and the introduction of exotic species.These processes have already resulted in reduction in abundance of this species, and the extinction of some populations. Much of the natural habitat of this species has been altered by chemical pollution or by human activities such as canalization, clearing, dredging and embanking of rivers, construction of reservoirs, and the regulation of water levels and stream flows. Furthermore, this species is also threatened by the introduction of exotic crayfish such as *Procambarus clarkii* and *Cherax* species from Australia, which competes for food resources and refuges, and also alters the total production of the native ecosystems (Gutiérrez-Yurrita and Latournerié-Cervera 1999). In addition to over explosion of population, a cultural pressure exists, purepecha people attributes curative properties at *Procambarus* [30].

probed T1= Trucha initial; T2= Camaronina, and T3=Tilapia initical, table 3. The handling of tanks involves, the feces removal and partial water change (30%) weekly. Feeding frequency

Multiple condition factor (K) was calculate for each treatment, with this factor is possible to

**Camaronina (35:8)**

**Tilapia Iniciador**

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**(32:4)**

Development of Freshwater Native Species with Aquacultural Potential

was adjusted to two provisions offered three times daily starting at 8 AM and 6 PM.

**Trucha Iniciador**

Protein (%) 50 35 32 Humidity (%) 12 12 12 Grass (%) 15 8 4 Crude fiber (%) 4 5 10 Ash (%) 12 10 10

**(50:15)**

Calcium (%) 2 1.4 Phosphorous (%) 1.2 0.9 E. L. N. 7 30

**Table 3.** Proximal Chemical Composition of the diets tested for growth

The type of growth was determine for the Ricker equation [32];

know the relative health for organisms [31].

*K* =(102∗*W* )/ *L <sup>b</sup>*

K= Multiple condition factor

b= exponent from W = KLb

Where;

W= Weight

L= Length

*W* =*aL <sup>b</sup>*

Where;

W=weight

a = intercept

As can be seen in

b= slope

**Diet Compounds**

#### **4.1. Study area**

The first part of the experiment was carry out in the national park of Camecuaro lake, which is found in Michoacan State over the municipality called Tangancícuaro, 19°54´10"N;102°12 ´20"O, at 1,700 meters above sea level. The national park has a spring called Camecuaro lake which is the main contribution for Camecuaro river, the depth is between 1.5 a 1.8 m; temper‐ ature 17.7 y 21°C; dissolved oxygen 7.3 y 7.5 mg/ L; visibility of 100%; hardness 138.8 y 145.5 mg/L CaCO3. A handled extraction was practice in order to have a desirable sample size for the laboratory work. The organisms were transported in plastic bags with a supplemented oxygen and ice to avoid the over heat.

#### **4.2. Laboratory studies**

Acclimatization of organisms was carrying out during a month in glass aquariums considering environmental conditions. The principal problems for the maintenance of the organism were the feed and the density, so in this case these two experiments were carry out.

#### *4.2.1. Establishing the diet*

The organism were placed in 15 rectangular glass tanks distributed using a Latin square scheme in order to avoid spatial effects. The tanks´ dimensions were of 0.45 m depth, 0.8 m wide and 0.3 m long, with a water storage capacity of 100 L. Three commercial diets were


probed T1= Trucha initial; T2= Camaronina, and T3=Tilapia initical, table 3. The handling of tanks involves, the feces removal and partial water change (30%) weekly. Feeding frequency was adjusted to two provisions offered three times daily starting at 8 AM and 6 PM.

**Table 3.** Proximal Chemical Composition of the diets tested for growth

Multiple condition factor (K) was calculate for each treatment, with this factor is possible to know the relative health for organisms [31].

*K* =(102∗*W* )/ *L <sup>b</sup>*

Where;

**4.** *Procambarus diguetti*

78 Sustainable Aquaculture Techniques

**4.1. Study area**

oxygen and ice to avoid the over heat.

**4.2. Laboratory studies**

*4.2.1. Establishing the diet*

The cambarids, known in Mexico as acociles (in Náhuatl), makaxil (in Mayan), chapos (in Purépecha), or freshwater crayfish, according to the region, are well known, and were regularly consumed by the Aztecs and other ethnic groups based around the Valle de Mexico already during prehispanic times [29]*. Procambarus digueti* is endemic to the Mexican Central-Occidental Plateau and is found only in certain parts of the Duero and Camécuaro rivers. The Duero River is 10 km long, whist the river Camécuaro is just 2 km long. The two rivers meet at Las Adjuntas. Furthermore, this species is known to occur in Lake Chapala, though samples were collected 40 to 50 years, so is believed to have naturally disappeared from some locations, though these local extinctions may in fact be unnatural This species is threatened by overexploitation, habitat destruction and degradation, and the introduction of exotic species.These processes have already resulted in reduction in abundance of this species, and the extinction of some populations. Much of the natural habitat of this species has been altered by chemical pollution or by human activities such as canalization, clearing, dredging and embanking of rivers, construction of reservoirs, and the regulation of water levels and stream flows. Furthermore, this species is also threatened by the introduction of exotic crayfish such as *Procambarus clarkii* and *Cherax* species from Australia, which competes for food resources and refuges, and also alters the total production of the native ecosystems (Gutiérrez-Yurrita and Latournerié-Cervera 1999). In addition to over explosion of population, a cultural pressure

exists, purepecha people attributes curative properties at *Procambarus* [30].

The first part of the experiment was carry out in the national park of Camecuaro lake, which is found in Michoacan State over the municipality called Tangancícuaro, 19°54´10"N;102°12 ´20"O, at 1,700 meters above sea level. The national park has a spring called Camecuaro lake which is the main contribution for Camecuaro river, the depth is between 1.5 a 1.8 m; temper‐ ature 17.7 y 21°C; dissolved oxygen 7.3 y 7.5 mg/ L; visibility of 100%; hardness 138.8 y 145.5 mg/L CaCO3. A handled extraction was practice in order to have a desirable sample size for the laboratory work. The organisms were transported in plastic bags with a supplemented

Acclimatization of organisms was carrying out during a month in glass aquariums considering environmental conditions. The principal problems for the maintenance of the organism were

The organism were placed in 15 rectangular glass tanks distributed using a Latin square scheme in order to avoid spatial effects. The tanks´ dimensions were of 0.45 m depth, 0.8 m wide and 0.3 m long, with a water storage capacity of 100 L. Three commercial diets were

the feed and the density, so in this case these two experiments were carry out.

K= Multiple condition factor

W= Weight

L= Length

b= exponent from W = KLb

The type of growth was determine for the Ricker equation [32];

*W* =*aL <sup>b</sup>*

Where;

W=weight

a = intercept

b= slope

As can be seen in

b As

Phosphorous (%) 1.2 0.9 E. L. N. 7 30

**Tabla 3**. Proximal Chemical Composition of the diets tested for growth

Protein (%) 50 35 32 Humidity (%) 12 12 12 Grass (%) 15 8 4 Crude fiber (%) 4 5 10 Ash (%) 12 10 10

**Diet** Trucha Iniciador Camaronina Tilapia Iniciador

 Aerobic metabolism were determine in natural conditions with a semi closed system with (0.5L) respirometric chambers, using a method which assumes that the reduction of oxygen and the increase of nitrogen in the chamber depend on the weight of the animal, the volume of water, the period of time in which no water circulated in the chamber and the ambient temperature (22). After each cycle, sample was oven-dried in an electric oven between 70-80°C until the samples had constant weight. After three weeks in laboratory under the diets treatment, oxygen consumption was measured to know if a metabolism was changed. The results show that higher consumption was found at 15:00 and minimal during the morning so

T1

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Development of Freshwater Native Species with Aquacultural Potential

T2

T3

At the end production of total biomass was estimated, the results show that T1 is the best feed for *Procambarus digueti*, and

14:00 19:00 00:00 04:00 05:00

Hours

**Figure 10.‐ Oxygen consumption for each diet treatment at the end of the experiment**

At the end production of total biomass was estimated, the results show that T1 is the best feed

The organism were placed in 15 rectangular glass tanks distributed using a Latin square scheme in order to avoid spatial effects. The tanks´ dimensions were of 0.4.5 m depth, 0.8 m wide and 0.3 m long, with a water storage capacity of 100 L. Five densities were probed, T1= 5, T2=10, T3=15, T4=20 ind/per aquarium. The handling of tanks involves, the feces removal

the fish did not show modification in oxygen consumption, Fig. 10.

0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8

0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8

QO2g-1

h


0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8

**Figure 10.** Oxygen consumption for each diet treatment at the end of the experiment

**Figure 11.** Biomass production at the end of experiment for each of the treatments

for *Procambarus digueti*, and T3 is the diet with a minor biomass production.

T3 is the diet with a minor biomass production.

*4.2.2. Establish an optimal density*

Length (mm)

**Figure 9.‐ Regression for each one of treatments, values for the equation W=KLb**

**Figure 9.** Regression for each one of treatments, values for the equation W=KLb

 Aerobic metabolism were determine in natural conditions with a semi closed system with (0.5L) respirometric chambers, using a method which assumes that the reduction of oxygen and the increase of nitrogen in the chamber depend on the weight of the animal, the volume of water, the period of time in which no water circulated in the chamber and the ambient Aerobic metabolism were determine in natural conditions with a semi closed system with (0.5L) respirometric chambers, using a method which assumes that the reduction of oxygen and the increase of nitrogen in the chamber depend on the weight of the animal, the volume of water, the period of time in which no water circulated in the chamber and the ambient temperature [22]. After each cycle, sample was oven-dried in an electric oven between 70-80°C until the samples had constant weight. After three weeks in laboratory under the diets treatment, oxygen consumption was measured to know if a metabolism was changed. The results show that higher consumption was found at 15:00 and minimal during the morning so the fish did not show modification in oxygen consumption, Fig. 10.

 Aerobic metabolism were determine in natural conditions with a semi closed system with (0.5L) respirometric chambers, using a method which assumes that the reduction of oxygen and the increase of nitrogen in the chamber depend on the

metabolism was changed. The results show that higher consumption was found at 15:00 and minimal during the morning so

**Figure 10.‐ Oxygen consumption for each diet treatment at the end of the experiment Figure 10.** Oxygen consumption for each diet treatment at the end of the experiment

the fish did not show modification in oxygen consumption, Fig. 10.

At the end production of total biomass was estimated, the results show that T1 is the best feed for *Procambarus digueti*, and T3 is the diet with a minor biomass production. At the end production of total biomass was estimated, the results show that T1 is the best feed for *Procambarus digueti*, and T3 is the diet with a minor biomass production.

**Figure 11.** Biomass production at the end of experiment for each of the treatments

#### *4.2.2. Establish an optimal density*

**Tabla 3**. Proximal Chemical Composition of the diets tested for growth

Protein (%) 50 35 32 Humidity (%) 12 12 12 Grass (%) 15 8 4 Crude fiber (%) 4 5 10 Ash (%) 12 10 10

Calcium (%) 2 1.4 Phosphorous (%) 1.2 0.9 E. L. N. 7 30

0 10 20 30 40 50 60 70

T2

T3

0 10 20 30 40 50 60 70

**Figure 9.‐ Regression for each one of treatments, values for the equation W=KLb**

Aerobic metabolism were determine in natural conditions with a semi closed system with (0.5L) respirometric chambers, using a method which assumes that the reduction of oxygen and the increase of nitrogen in the chamber depend on the weight of the animal, the volume of water, the period of time in which no water circulated in the chamber and the ambient temperature [22]. After each cycle, sample was oven-dried in an electric oven between 70-80°C until the samples had constant weight. After three weeks in laboratory under the diets treatment, oxygen consumption was measured to know if a metabolism was changed. The results show that higher consumption was found at 15:00 and minimal during the morning so

Length (mm)

b As

Weight (g)

0

8

0

2

4

6

2

4

r 2 = 89.55

r 2 = 89.46

r 2

6

80 Sustainable Aquaculture Techniques

8 T1 Weigth = 0.00004\*L^2.9 Correlation coeff. = 0.9

Standar error = 0.09

Weigth = 0.00005\*Lt^2.8 Correlation coeff = 0.9

Standar error = 0.1

Weigth = 0.00006\*Lt^2.7 Correlation coeff = 0.9

**Figure 9.** Regression for each one of treatments, values for the equation W=KLb

the fish did not show modification in oxygen consumption, Fig. 10.

 = 87.83 percent Standar error = 0.09

**Diet** Trucha Iniciador Camaronina Tilapia Iniciador

 Aerobic metabolism were determine in natural conditions with a semi closed system with (0.5L) respirometric chambers, using a method which assumes that the reduction of oxygen and the increase of nitrogen in the chamber depend on the weight of the animal, the volume of water, the period of time in which no water circulated in the chamber and the ambient The organism were placed in 15 rectangular glass tanks distributed using a Latin square scheme in order to avoid spatial effects. The tanks´ dimensions were of 0.4.5 m depth, 0.8 m wide and 0.3 m long, with a water storage capacity of 100 L. Five densities were probed, T1= 5, T2=10, T3=15, T4=20 ind/per aquarium. The handling of tanks involves, the feces removal and partial water change (30%) weekly. The fish were feeding with a commercial diet for trucha (50% protein, 10% humidity, 12% lipid, 12% ash, 4% fiber, 12% moisture) throughout the experiment. Feeding frequency was adjusted to three provisions offered two times daily at 8 AM, and 6 PM. The results show that a density of 15 organisms is optimal for *Procambarus* growth, table 4.

**5. Conclusion**

species.

the experience and improve existing technology.

*Herinchthys cyanogutattus.*

bioenergetics approach.

parameters is possible to start the research.

Aquaculture has been supporting human demands for fish products for centuries and is an important industry worldwide. Global production from aquaculture has been increasing steadily, having more than doubled in the last decade; aquaculture now supplies one third of seafood consumed worldwide. With the massive increase in world aquaculture production in 1990s, the current aquaculture industry is one of the fastest growing sectors in world food production. However, the expansion of aquaculture has been accompanied by degradation of the natural environment, especially on marine aquaculture. Directly impacts of fisheries and aquaculture are habitat modification, collection of wild seedstock, changes of food webs, introduction of nonnative fish species and diseases that harm wild fish populations, and nutrient pollution. According to the FAO, major issues that need to be addressed are problems with access to proper technology and financial resources, together with environmental impacts and diseases. Another argues that further increases in aquaculture production will come mainly from further investment in biotechnology. The development of new strategies or technologies does not imply that the old one disappears; to the contrary the main idea is to use

Development of Freshwater Native Species with Aquacultural Potential

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83

These three experiences and review of similar cases that have been developed in Mexico allow us to establish a general methodology in order to know the aquaculture potential for native

**1.** Knowledge.- The first step consist in to know and get the information above the specie. In the case of *G. multiradiatus* the knowledge practically doesn't exists so the research was oriented to the basic biology and ecology aspects. For example, with *G. multiradiatus* the main objective was to obtain reproduction but to reach these aspects it is required the maintenance under laboratory conditions and for this the knowing of food habits are essential. In the case of *H. cyanogutattus* the main problem was its taxonomic status, so the principal problem to obtain the basic knowledge is that some aspect were publish under the scientific name *Cichlasoma cyanoguttatum* and others aspects with the actual name

**2.** Environmental prospections.- It is necessary to know the basic physicochemical parame‐ ters (T°, pH, DO2) in order to establish the strategy for transportation and laboratory maintenance. Field observations and ecological description is necessary in order to know the feeding habits, interspecific competence and the disposition of resources. With these

**3.** Feed.- Under laboratory conditions feeding is the main problem in order to continue so the proofs needed is the acceptance of commercial food. The three species show an acceptance for commercial food but the problem here is the metabolism aspects such as assimilation and performance growth. This kind of problems could be solved with a

**4.** Bioenergetics.- Ecophysiological basis of species should take into consideration the physiological characteristics and ecological role of the organism in question. Physiological


**Table 4.** Performance growth for the densities treatment in *Procambarus digueti*

#### *4.2.3. Bioenergetics*

The flow of energy that was used to determine the energy efficiency and assimilation is show in the next equation:

#### C = P + G +ER + EU + F

Where; C is the total energy content of food consumed, P and G are the energy equivalents of somatic and gonadal growth respectively, ER is the energy utilized in respiration, EU is the energy lost as nitrogenous and other waste compounds excreted (50% protein) is the best food for *Procambarus digueti.* The energy balance is show in the table 5.


**Table 5.** Energetic balance for *Procambarus digueti*

#### **5. Conclusion**

and partial water change (30%) weekly. The fish were feeding with a commercial diet for trucha (50% protein, 10% humidity, 12% lipid, 12% ash, 4% fiber, 12% moisture) throughout the experiment. Feeding frequency was adjusted to three provisions offered two times daily at 8 AM, and 6 PM. The results show that a density of 15 organisms is optimal for *Procambarus*

The flow of energy that was used to determine the energy efficiency and assimilation is show

Where; C is the total energy content of food consumed, P and G are the energy equivalents of somatic and gonadal growth respectively, ER is the energy utilized in respiration, EU is the energy lost as nitrogenous and other waste compounds excreted (50% protein) is the best food

**Diet C P R U F**

**Oxygen cal/mg**

**Nitrogen cal/mg**

**Feces g**

**Biomass cal/mg**

**Tilapia (32:4)** 5423.44 3.664 1.309 0.450 0.014 **Camaronina (34:8)** 5545.03 3.845 1.175 0.525 0.009 **Trucha (50:15)** 5706.273 3.873 1.264 0.569 0.006

Treatment 5 10 15 20 Initial number (n) 5 10 15 20 Final average number (n) 5 8 9 6 Survival rate (%) 100 80 60 30 Initial individual average weight (g) 4.8 5.23 5.53 5.18 Final individual average weight (g) 7.12 5.67 6.36 2.82 SGR (%/día) 1.94 1.71 1.83 1.018 Weight gain (%) 612.9 467.2 536 182 Production 0.302 0.158 0.091 0.063

**Table 4.** Performance growth for the densities treatment in *Procambarus digueti*

for *Procambarus digueti.* The energy balance is show in the table 5.

**Consume cal/mg**

**Table 5.** Energetic balance for *Procambarus digueti*

growth, table 4.

82 Sustainable Aquaculture Techniques

*4.2.3. Bioenergetics*

in the next equation:

C = P + G +ER + EU + F

Aquaculture has been supporting human demands for fish products for centuries and is an important industry worldwide. Global production from aquaculture has been increasing steadily, having more than doubled in the last decade; aquaculture now supplies one third of seafood consumed worldwide. With the massive increase in world aquaculture production in 1990s, the current aquaculture industry is one of the fastest growing sectors in world food production. However, the expansion of aquaculture has been accompanied by degradation of the natural environment, especially on marine aquaculture. Directly impacts of fisheries and aquaculture are habitat modification, collection of wild seedstock, changes of food webs, introduction of nonnative fish species and diseases that harm wild fish populations, and nutrient pollution. According to the FAO, major issues that need to be addressed are problems with access to proper technology and financial resources, together with environmental impacts and diseases. Another argues that further increases in aquaculture production will come mainly from further investment in biotechnology. The development of new strategies or technologies does not imply that the old one disappears; to the contrary the main idea is to use the experience and improve existing technology.

These three experiences and review of similar cases that have been developed in Mexico allow us to establish a general methodology in order to know the aquaculture potential for native species.


analysis will reflect the conditions which affect population characteristics, such as population growth, intraspecific competition, and functional and numerical responses. These studies can do more than being simply descriptive, since they enable the develop‐ ment of scenarios that can be tested either through strictly controlled laboratory experi‐ ments or field experiments.

[6] García-Trejo F, Soto- Zarazúa GM. La nueva ecología, una perspectiva integradora

Development of Freshwater Native Species with Aquacultural Potential

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[11] Martinez-Palacios CA, Ross LG. The reproductive biology and growth of the Central American cichlid Cichlasoma urophthalmus (Günther) Journal of Applied Ichthyolo‐

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The new aquaculture research must be consider to add native species, this work is an effort to get the basic information in order to development of biotechnology and a link between the basic and applied science.

#### **Acknowledgements**

This work was partially finance by CONACYT.

#### **Author details**

Fernando Garcia-Trejo1 , Silvia Hurtado-Gonzalez1 , Genaro M. Soto-Zarazua1 and P. J Gutierrez-Yurrita2

1 División de Estudios de Posgrado Facultad de Ingeniería, Universidad Autónoma de Querétaro, C.U. Cerro de las Campanas, Qro, México

2 Centro Interdisciplinario de Investigaciones y Estudios sobre Medio Ambiente y Desarrol‐ lo (CIIEMAD), Instituto Politécnico Nacional, México

#### **References**


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analysis will reflect the conditions which affect population characteristics, such as population growth, intraspecific competition, and functional and numerical responses. These studies can do more than being simply descriptive, since they enable the develop‐ ment of scenarios that can be tested either through strictly controlled laboratory experi‐

The new aquaculture research must be consider to add native species, this work is an effort to get the basic information in order to development of biotechnology and a link between the

1 División de Estudios de Posgrado Facultad de Ingeniería, Universidad Autónoma de

2 Centro Interdisciplinario de Investigaciones y Estudios sobre Medio Ambiente y Desarrol‐

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[4] Costa-Pierce B. Ecological Aquaculture: the evolution of the Blue Revolution second

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, Silvia Hurtado-Gonzalez1

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**Acknowledgements**

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Fernando Garcia-Trejo1

P. J Gutierrez-Yurrita2

**References**

FAO.

2004.


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**Chapter 3**

**Biofloc, a Technical Alternative for Culturing Malaysian**

Aquaculture is a major food- producing activity that is growing steadily, coupled with growing population density and land use needs of other industries. To maintain growth, aquaculture must shift to intensive or semi-intensive practices, effective and sustainable use of resources, and sustainable environmental stewardship. This often requires application of technologies that increase production efficiency and avoids competition for space and resources with other activities, such as agriculture and ranching. Aquacultural practices must be sustainable and minimally destructive to the environment, maintain quality and safety standards, and enable efficient use of space and natural resources and possibilities for expansion. Technology alternatives that reduce environmental impact and are efficient without affecting the health and growth of stock organisms must be incorporated into current practices. One option is to apply biofloc technology. Biofloc forms naturally in pond water as aggregates of nitrifying bacteria, organic material, inorganic flocculants, and suspended algae. These ingredients serve as food for the stock under cultivation and promote direct use of nitrogenous compounds in feces, urine, and food waste. Activity of nitrifying bacteria increases with addition of carbon sources and constant aeration, which maintains or significantly improves water quality during cultivation. Thus, the large volume of water required in intensive aquafarming is greatly reduced [1, 2, 3]. An example is using biofloc during cultivation of the Malaysian river prawn *Macrobrachium rosenbergii*. The approach led to major savings of water, without affecting the

Biofloc culture is a system where, after adding a carbon source and providing constant aeration, biofloc bacteria maintain water quality during cultivation of freshwater shrimp. The

> © 2014 Pérez-Rostro et al.; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use,

distribution, and reproduction in any medium, provided the original work is properly cited.

**Prawn** *Macrobrachium rosenbergii*

Carlos I. Pérez-Rostro, Jorge A. Pérez-Fuentes and

Additional information is available at the end of the chapter

Martha P. Hernández-Vergara

http://dx.doi.org/10.5772/57501

**1. Introduction**

quality of the prawns.

**1.1. What is biofloc?**


## **Biofloc, a Technical Alternative for Culturing Malaysian Prawn** *Macrobrachium rosenbergii*

Carlos I. Pérez-Rostro, Jorge A. Pérez-Fuentes and Martha P. Hernández-Vergara

Additional information is available at the end of the chapter

http://dx.doi.org/10.5772/57501

#### **1. Introduction**

[20] Trujillo-Jiménez P, Viveros EE. La ecología alimentaria del pez endémico Girardi‐ nichthys multiradiatus (Cyprinidontiformes: Goodeidae), en el Parque Nacional La‐

[21] García E. Modificaciones al Sistema de Clasificación Climática de Koppen. México:

[22] Steffensen JF. Some errors in respirometry of aquatic breathers: how to avoid and

[23] AOAC. Official Methods of Analysis of AOAC International,. sixteen ed. Gaithers‐

[24] Klekowsky RZ, Duncan A. Physiological approach to ecological energetics. In: Grod‐ zinzky H, Groves TDD, editors. Methods for ecological bioenergetics. Oxford: Blac‐

[25] Hubbs CT, Lucier GP, Garrett RJ, Edwards SM, Dean E, Marsh E, et al. Survival and abundance of introduced fishes near San Antonio, Texas. Texas Journal of Science.

[26] Shafland PL, Pestrak JM. Lower lethal temperatures for fourteen non-native fishes in

[27] Lee DS, Gilbert CR, Hocutt CH, Jen RE. Atlas of North American freshwater fishes.

[28] Itzkowitz M, Nyby J. Field Observations of Parental Behavior of the Texas Cichlid Ci‐ chlasoma cyanoguttatum. American Midland Naturalist. 1982;2[108]:364-8.

[29] Gutierrez-Yurrita PJ, Morales-ortiz A, Oviedo A, Ramirez-Perez C. Distribution, spread, habitat characterisation and conservation of the crayfish species (Cambari‐

[30] Gutiérrez-Yurrita PJ, R LCJ, editors. Preliminary studies on exploitation of two na‐ tive crayfish species of the genus Procambarus (CRUSTACEA: DECAPODA) by purépecha people in Michoacán, México. Proceedings of the III International Con‐

[31] Kuri-Nivon E. Manual para la producción de trucha y salmón.. Idaho: Universidad de Idaho; 1976. Manual para la producción de trucha y salmón. Universidad de Ida‐

[32] Richter JB. Anfangsgründen der Stöchiometrie oder Messkunst chemischer Elemente (Foundations of stoichiometry or surveying chemical elements). Breslau1792.

Raleigh, NC: North Carolina State Museum of Natural History; 1980.

dae) in Querétaro (central México). Freshwater Crayfish. 2001;13:349-58.

gunas de Zempoala, México. Revista de Biología Tropical 2006;54 1247-55.

correct for them Fish Physiology and Biochemistry. 1989;6:49-59.

Enriqueta García; 1988.

86 Sustainable Aquaculture Techniques

1978;4[30]:369-76.

gress of Ethnobiology; 1992.

ho.

burg, MD, USA.: AOAC; 1998.

well Scientific Publication; 1975. p. 227-61.

Florida. Environmental Biology of Fishes 1982(7):149–56.

Aquaculture is a major food- producing activity that is growing steadily, coupled with growing population density and land use needs of other industries. To maintain growth, aquaculture must shift to intensive or semi-intensive practices, effective and sustainable use of resources, and sustainable environmental stewardship. This often requires application of technologies that increase production efficiency and avoids competition for space and resources with other activities, such as agriculture and ranching. Aquacultural practices must be sustainable and minimally destructive to the environment, maintain quality and safety standards, and enable efficient use of space and natural resources and possibilities for expansion. Technology alternatives that reduce environmental impact and are efficient without affecting the health and growth of stock organisms must be incorporated into current practices. One option is to apply biofloc technology. Biofloc forms naturally in pond water as aggregates of nitrifying bacteria, organic material, inorganic flocculants, and suspended algae. These ingredients serve as food for the stock under cultivation and promote direct use of nitrogenous compounds in feces, urine, and food waste. Activity of nitrifying bacteria increases with addition of carbon sources and constant aeration, which maintains or significantly improves water quality during cultivation. Thus, the large volume of water required in intensive aquafarming is greatly reduced [1, 2, 3]. An example is using biofloc during cultivation of the Malaysian river prawn *Macrobrachium rosenbergii*. The approach led to major savings of water, without affecting the quality of the prawns.

#### **1.1. What is biofloc?**

Biofloc culture is a system where, after adding a carbon source and providing constant aeration, biofloc bacteria maintain water quality during cultivation of freshwater shrimp. The

© 2014 Pérez-Rostro et al.; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

metabolic processes and biochemical transformations take place directly in the water column, which promotes overall balance of the system and the health of the farmed shrimp. The biofloc forms in the pond water naturally as aggregates of nitrifying bacteria, organic material, inorganic flocculants, and suspended algae. The algae serves as food for the pond stock and the bacterial promotes direct conversion nitrogenous waste to simpler compounds. The selfcycling process maintains or greatly improves the quality of the pond water during cultivation. Improvement in water quality drastically reduces the need to cycle large volumes of additional water in the farm pond system. This leads to a sustainable activity that is in balance with the environment and reduces the cost of water and feed for the pond stock [1, 2, 3] (Fig. 1).

composed of algae. The importance of this is that, in both cases, the microorganisms present in the bioflocs maintain water quality because they decrease nitrogen compounds and are also nutrients for the bacterial and algae. It is important to understand that, depending on the nature of the biofloc microorganisms, their nutritional quality can vary. This affects the supply

Biofloc, a Technical Alternative for Culturing Malaysian Prawn *Macrobrachium rosenbergii*

http://dx.doi.org/10.5772/57501

89

**Biofloc of bacteria Biofloc of algae Biofloc of bacteria-algae Figure 2.** Types of biofloc, based on predominant species. The microorganisms that populate biofloc systems typically inhabit natural aquatic systems. Their presence depends directly on two environmental variables: intensity of solar energy absorbed by the system and the concentration of organic matter and carbon sources that enter the system. In a biofloc system, colonies of bacteria depend mostly on organic matter present in the system for survival and proliferation, and, to a lesser degree, on the intensity of sunlight. Bacteria are also directly dependent on the system to supply constant aeration because the bacteria consume large volumes of oxygen, which is, in turn, directly related to the bacteria consuming carbon from the system. The carbon is a source of power for growth and proliferation. The concentration of carbon in the system must be maintained at a C/N ratio appropriate for maintaining reproduction of bacteria with inorganic nitrogen to a maximum concentration of 200 mg L–1 [6]. This level is an indicator that the system is effectively and economically controling nitrogen. High concentrations of nitrogen will usually upset the balance

The microorganisms that populate biofloc systems typically inhabit natural aquatic systems. Their presence depends directly on two environmental variables: intensity of solar energy absorbed by the system and the concentration of organic matter and carbon sources that enter the system. In a biofloc system, colonies of bacteria depend mostly on organic matter present in the system for survival and proliferation, and, to a lesser degree, on the intensity of sunlight. Bacteria are also directly dependent on the system to supply constant aeration because the bacteria consume large volumes of oxygen, which is, in turn, directly related to the bacteria consuming carbon from the system. The carbon is a source of power for growth and prolifer‐ ation. The concentration of carbon in the system must be maintained at a C/N ratio appropriate for maintaining reproduction of bacteria with inorganic nitrogen to a maximum concentration of 200 mg L–1 [6]. This level is an indicator that the system is effectively and economically controling nitrogen. High concentrations of nitrogen will usually upset the balance of the

In a biofloc system based on bacteria and algae, nitrogen compounds are removed as bacteria increased uptake of ammonium and better control the products of waste. This does not depend on the intensity of sunlight to run efficiently. In a microalgal biofloc system, productivity depends directly on sunlight; excess illumination can generate an excess of algae, which leads to low oxygen at midday. Hence, a system using microalgae and bacteria will be a more efficient alternative bioremediation because it is possible to maintain an efficient balance between nitrifying bacteria and algae to maintain a suitable level of nitrogen, a balanced C/N ratio, and sunlight. The diversity of live food available in ponds also increases in mixed biofloc systems, which brings benefits to the stock under cultivation. This includes reducing the amount of artificial feed necessary to meet nutrient requirements under semi-intensive and intensive pond farming. It also includes nutritients not present in synthetic diets. Not to be dismissed lightly is the great savings in costs of providing fresh water and handling

The microorganisms that form the biofloc and process nitrogen compounds that pollute fish pond water need a source of energy for metabolism. In aquatic biofloc systems, there are three likely energy sources, depending on the nature of the organisms present in the biofloc system (bacteria–algae aggregations). Most important is sunlight, which is the main source of energy for phototrophic microorganisms, such as algae and vascular plants. Solar reception can be controlled or semicontrolled to support the needs of the biofloc crop and promote any type of biofloc system. The second source of energy is the forms of inorganic compounds that are used by the microorganisms that oxidize reduced forms of simple compounds, especially nitrogen to obtain energy. In fish farming, by metabolizing organic nitrogen and ammonia, nitrogen is oxidized to nitrite and nitrate. The third source of energy is organic compounds that are transformed by microorganisms that derive

In a biofloc system based on bacteria and algae, nitrogen compounds are removed as bacteria increased uptake of ammonium and better control the products of waste. This does not depend on the intensity of sunlight to run efficiently. In a microalgal biofloc system, productivity depends directly on sunlight; excess illumination can generate an excess of algae, which leads to low oxygen at midday. Hence, a system using microalgae and bacteria will be a more efficient alternative bioremediation because it is possible to maintain an efficient balance between nitrifying bacteria and algae to maintain a suitable level of nitrogen, a balanced C/N ratio, and sunlight. The diversity of live food available in ponds also increases in mixed biofloc systems, which brings benefits to the stock under cultivation. This includes reducing the

Both chemothrophic and phototrophic microorganisms naturally consume and deplete nitrogen concentrations in the water because of the relatively large quantity of energy sources that are present, but also because this is an indispensable function

Systems for cleaning and wastewater bioremediation, using microalgae and bacteria, is a widely known technology; however, in aquaculture systems, they should be used with caution because, with microalgae, the efficiency of the system depends directly on solar energy and intensity, which in open systems can be a risk because there is no control over productivity [7,

of nutrients for the stock organisms in the ponds (Fig. 2).

of the system and affect the health of stock species, especially shrimp.

**Figure 2.** Types of biofloc, based on predominant species.

organic wastes in water discharge.

**1.2. Source of energy for bacteria and algae in biofloc** 

energy from the metabolic oxidation of organic carbon and transform it to carbon dioxide.

system and affect the health of stock species, especially shrimp.

of the microorganisms. Transformed energy is used to synthesis proteins from the nitrogen sources.

**Figure 1.** Biological processes in biofloc cultivation

In a biofloc system, the biological nitrification process occurs in three stages. In the first stage, bacteria of the genera *Nitrosomonas* and *Nitrosococcus* act on ammonia (NH3/NH4) generated by food scraps and feces and urine. The waste is oxidized to nitrite (NO2). In the second stage, the nitrite is converted to nitrate (NO3) by bacteria of the genera *Nitrobacter* and *Nitrospira*. The nitrate is reduced to nitrogen gas (anoxic denitrification) by bacteria mainly from the genera *Achromobacter* and *Pseudomonas* [4, 5].

Biofloc are of two main types. Classification is based on the amount and nature of organic matter and its component organisms, the latter can be bacterial or autotrophic, mainly composed of algae. The importance of this is that, in both cases, the microorganisms present in the bioflocs maintain water quality because they decrease nitrogen compounds and are also nutrients for the bacterial and algae. It is important to understand that, depending on the nature of the biofloc microorganisms, their nutritional quality can vary. This affects the supply of nutrients for the stock organisms in the ponds (Fig. 2).

metabolic processes and biochemical transformations take place directly in the water column, which promotes overall balance of the system and the health of the farmed shrimp. The biofloc forms in the pond water naturally as aggregates of nitrifying bacteria, organic material, inorganic flocculants, and suspended algae. The algae serves as food for the pond stock and the bacterial promotes direct conversion nitrogenous waste to simpler compounds. The selfcycling process maintains or greatly improves the quality of the pond water during cultivation. Improvement in water quality drastically reduces the need to cycle large volumes of additional water in the farm pond system. This leads to a sustainable activity that is in balance with the environment and reduces the cost of water and feed for the pond stock [1, 2, 3] (Fig. 1).

In a biofloc system, the biological nitrification process occurs in three stages. In the first stage, bacteria of the genera *Nitrosomonas* and *Nitrosococcus* act on ammonia (NH3/NH4) generated by food scraps and feces and urine. The waste is oxidized to nitrite (NO2). In the second stage, the nitrite is converted to nitrate (NO3) by bacteria of the genera *Nitrobacter* and *Nitrospira*. The nitrate is reduced to nitrogen gas (anoxic denitrification) by bacteria mainly from the genera

Biofloc are of two main types. Classification is based on the amount and nature of organic matter and its component organisms, the latter can be bacterial or autotrophic, mainly

**Figure 1.** Biological processes in biofloc cultivation

88 Sustainable Aquaculture Techniques

*Achromobacter* and *Pseudomonas* [4, 5].

on two environmental variables: intensity of solar energy absorbed by the system and the concentration of organic matter

**Biofloc of bacteria Biofloc of algae Biofloc of bacteria-algae** 

**Figure 2.** Types of biofloc, based on predominant species. The microorganisms that populate biofloc systems typically inhabit natural aquatic systems. Their presence depends directly **Figure 2.** Types of biofloc, based on predominant species.

and carbon sources that enter the system. In a biofloc system, colonies of bacteria depend mostly on organic matter present in the system for survival and proliferation, and, to a lesser degree, on the intensity of sunlight. Bacteria are also directly dependent on the system to supply constant aeration because the bacteria consume large volumes of oxygen, which is, in turn, directly related to the bacteria consuming carbon from the system. The carbon is a source of power for growth and proliferation. The concentration of carbon in the system must be maintained at a C/N ratio appropriate for maintaining reproduction of bacteria with inorganic nitrogen to a maximum concentration of 200 mg L–1 [6]. This level is an indicator that the system is effectively and economically controling nitrogen. High concentrations of nitrogen will usually upset the balance of the system and affect the health of stock species, especially shrimp. In a biofloc system based on bacteria and algae, nitrogen compounds are removed as bacteria increased uptake of ammonium and better control the products of waste. This does not depend on the intensity of sunlight to run efficiently. In a microalgal biofloc system, productivity depends directly on sunlight; excess illumination can generate an excess of algae, which leads to low oxygen at midday. Hence, a system using microalgae and bacteria will be a more efficient alternative bioremediation because it is possible to maintain an efficient balance between nitrifying bacteria and algae to maintain a suitable level of nitrogen, a balanced C/N ratio, and sunlight. The diversity of live food available in ponds also increases in mixed biofloc systems, which brings benefits to the stock under cultivation. This includes reducing the amount of artificial feed necessary to meet nutrient requirements under semi-intensive and intensive pond farming. It also includes nutritients not present in synthetic diets. Not to be dismissed lightly is the great savings in costs of providing fresh water and handling organic wastes in water discharge. The microorganisms that populate biofloc systems typically inhabit natural aquatic systems. Their presence depends directly on two environmental variables: intensity of solar energy absorbed by the system and the concentration of organic matter and carbon sources that enter the system. In a biofloc system, colonies of bacteria depend mostly on organic matter present in the system for survival and proliferation, and, to a lesser degree, on the intensity of sunlight. Bacteria are also directly dependent on the system to supply constant aeration because the bacteria consume large volumes of oxygen, which is, in turn, directly related to the bacteria consuming carbon from the system. The carbon is a source of power for growth and prolifer‐ ation. The concentration of carbon in the system must be maintained at a C/N ratio appropriate for maintaining reproduction of bacteria with inorganic nitrogen to a maximum concentration of 200 mg L–1 [6]. This level is an indicator that the system is effectively and economically controling nitrogen. High concentrations of nitrogen will usually upset the balance of the system and affect the health of stock species, especially shrimp.

**1.2. Source of energy for bacteria and algae in biofloc**  The microorganisms that form the biofloc and process nitrogen compounds that pollute fish pond water need a source of energy for metabolism. In aquatic biofloc systems, there are three likely energy sources, depending on the nature of the organisms present in the biofloc system (bacteria–algae aggregations). Most important is sunlight, which is the main source of energy for phototrophic microorganisms, such as algae and vascular plants. Solar reception can be controlled or semicontrolled to support the needs of the biofloc crop and promote any type of biofloc system. The second source of energy is the forms of inorganic compounds that are used by the microorganisms that oxidize reduced forms of simple compounds, especially nitrogen to obtain energy. In fish farming, by metabolizing organic nitrogen and ammonia, nitrogen is oxidized to nitrite and nitrate. The third source of energy is organic compounds that are transformed by microorganisms that derive energy from the metabolic oxidation of organic carbon and transform it to carbon dioxide. Both chemothrophic and phototrophic microorganisms naturally consume and deplete nitrogen concentrations in the water In a biofloc system based on bacteria and algae, nitrogen compounds are removed as bacteria increased uptake of ammonium and better control the products of waste. This does not depend on the intensity of sunlight to run efficiently. In a microalgal biofloc system, productivity depends directly on sunlight; excess illumination can generate an excess of algae, which leads to low oxygen at midday. Hence, a system using microalgae and bacteria will be a more efficient alternative bioremediation because it is possible to maintain an efficient balance between nitrifying bacteria and algae to maintain a suitable level of nitrogen, a balanced C/N ratio, and sunlight. The diversity of live food available in ponds also increases in mixed biofloc systems, which brings benefits to the stock under cultivation. This includes reducing the

because of the relatively large quantity of energy sources that are present, but also because this is an indispensable function

Systems for cleaning and wastewater bioremediation, using microalgae and bacteria, is a widely known technology; however, in aquaculture systems, they should be used with caution because, with microalgae, the efficiency of the system depends directly on solar energy and intensity, which in open systems can be a risk because there is no control over productivity [7,

of the microorganisms. Transformed energy is used to synthesis proteins from the nitrogen sources.

amount of artificial feed necessary to meet nutrient requirements under semi-intensive and intensive pond farming. It also includes nutritients not present in synthetic diets. Not to be dismissed lightly is the great savings in costs of providing fresh water and handling organic wastes in water discharge.

the production cycle and needs additional water only to replace water lost by evaporation, leakage, or to remove organic material during production. The biofloc microorganisms serve as natural food, depending on the eating habits of the stock species. This will reduce con‐ sumption of artificial food and lead to more efficient conversion of food. Biofloc is more than a supplemental source of nutrients in aquatic systems. It brings economic benefits during production and enables more efficient use of resources, given that the main source of protein during production is fish meal. Fish meal often comes from overharvesting of fisheries. Considering the rapid growth of pond farming, biofloc can directly contribute to reduced

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91

Efficient operations with biofloc aquaculture systems depend on maintaining water physico‐ chemical parameters within the range of tolerance of cultivated stock because this affects yield per unit volume. This is important because biofloc pond farming is a form of simple and complete synthetic ecosystems, based on three components that interact in the same space: (1) Stock of one or more commercial species; (2) Microalgae interact and function as biofiltrates that also have oxygen demand and, like commercial stock, produce metabolites; and (3) Bacteria responsible for transforming nitrogenous metabolites that are used by the planktonic microalgae. The purpose of a complex pond ecosystem with a biofloc cultivation system is the comprehensive use of energy and biotransformed products that maintain water quality and provide natural nutrients that promote the health and quality of a commercial animal crop

Water quality in aquatic systems is directly related to biological and chemical processes that

Oxygen in aquatic systems should be >5 mg L–1. In a biofloc pond system, the bacteria and algae that form the biofloc also have oxygen demand, so competition can occur in the pond. It is recommended that dissolved oxygen be maintained at 7–8 mg L–1 to ensure proper

pH should range from 6.5 to 9, depending on the cultivated stock. Aslo, pH <6 and >8.5 usually affects the efficiency of the biofloc components, as well as growth and survival of the cultivated stock. In a biofloc system, pH varies during the day as concentration of carbon dioxide build up from the respiration of the stock. We recommend a range of pH 7.0–8.5, which favors functioning of biological cycles in the system. To maintain the pH balance, low pH can be adjusted with calcium hydroxide, potassium hydroxide, sodium carbonate, or sodium bicarbonate. High pH can be adjusted with carbonic acid, hydrochloric acid, sulfuric acid,

pressure on fisheries.

*1.4.1. Dissolved oxygen*

functioning of the system.

phosphoric acid, or their salts.

*1.4.2. pH*

**1.4. Physical-chemical parameters of water in the biofloc**

without negative impacts on adjacent water bodies.

occur in the aquatic environment and depend on several factors.

#### **1.2. Source of energy for bacteria and algae in biofloc**

The microorganisms that form the biofloc and process nitrogen compounds that pollute fish pond water need a source of energy for metabolism. In aquatic biofloc systems, there are three likely energy sources, depending on the nature of the organisms present in the biofloc system (bacteria–algae aggregations). Most important is sunlight, which is the main source of energy for phototrophic microorganisms, such as algae and vascular plants. Solar reception can be controlled or semi-controlled to support the needs of the biofloc crop and promote any type of biofloc system. The second source of energy is the forms of inorganic compounds that are used by the microorganisms that oxidize reduced forms of simple compounds, especially nitrogen to obtain energy. In fish farming, by metabolizing organic nitrogen and ammonia, nitrogen is oxidized to nitrite and nitrate. The third source of energy is organic compounds that are transformed by microorganisms that derive energy from the metabolic oxidation of organic carbon and transform it to carbon dioxide.

Both chemothrophic and phototrophic microorganisms naturally consume and deplete nitrogen concentrations in the water because of the relatively large quantity of energy sources that are present, but also because this is an indispensable function of the microorganisms. Transformed energy is used to synthesis proteins from the nitrogen sources.

Systems for cleaning and wastewater bioremediation, using microalgae and bacteria, is a widely known technology; however, in aquaculture systems, they should be used with caution because, with microalgae, the efficiency of the system depends directly on solar energy and intensity, which in open systems can be a risk because there is no control over productivity [7, 8]. An excess of primary production leads to constant consumption of oxygen during the night. On cloudy days, productivity will reduce water quality.

Biofloc or nitrifying colonies of bacteria in aquaculture requires incorporation of additional carbon sources into the system to adequately reproduce biofloc and maintain high density because carbohydrates in the system may be insufficient. Some of the main sources of carbon that can be used in aquaculture crops are: glycerol and sodium acetate, sugar, tapioca flour, wheat flour, and molasses [9, 10, 11, 12, 13, 14]. Use depends directly on the local costs of these products. For a biofloc system to operate efficiently, it is best to maintain a C/N ratio between 10:1 and 20:1 [15, 1, 16, 17, 10]. The amount of carbon depends on several factors, including: water quality, physiology and growing body density of the stock, quality and quantity of food to be cultivated, and solubility of the carbon source. The carbon additive must be continuously monitored to ensure that the system is functioning properly.

#### **1.3. Ecological importance of using biofloc in aquaculture**

Biofloc technology provides more efficient and sustainable aquaculture by reducing environ‐ mental impacts. One major advantage is reducing the volume of water required by the system during cultivation. Biofloc in the cultivation system uses the initial water volume throughout the production cycle and needs additional water only to replace water lost by evaporation, leakage, or to remove organic material during production. The biofloc microorganisms serve as natural food, depending on the eating habits of the stock species. This will reduce con‐ sumption of artificial food and lead to more efficient conversion of food. Biofloc is more than a supplemental source of nutrients in aquatic systems. It brings economic benefits during production and enables more efficient use of resources, given that the main source of protein during production is fish meal. Fish meal often comes from overharvesting of fisheries. Considering the rapid growth of pond farming, biofloc can directly contribute to reduced pressure on fisheries.

#### **1.4. Physical-chemical parameters of water in the biofloc**

Efficient operations with biofloc aquaculture systems depend on maintaining water physico‐ chemical parameters within the range of tolerance of cultivated stock because this affects yield per unit volume. This is important because biofloc pond farming is a form of simple and complete synthetic ecosystems, based on three components that interact in the same space: (1) Stock of one or more commercial species; (2) Microalgae interact and function as biofiltrates that also have oxygen demand and, like commercial stock, produce metabolites; and (3) Bacteria responsible for transforming nitrogenous metabolites that are used by the planktonic microalgae. The purpose of a complex pond ecosystem with a biofloc cultivation system is the comprehensive use of energy and biotransformed products that maintain water quality and provide natural nutrients that promote the health and quality of a commercial animal crop without negative impacts on adjacent water bodies.

Water quality in aquatic systems is directly related to biological and chemical processes that occur in the aquatic environment and depend on several factors.

#### *1.4.1. Dissolved oxygen*

Oxygen in aquatic systems should be >5 mg L–1. In a biofloc pond system, the bacteria and algae that form the biofloc also have oxygen demand, so competition can occur in the pond. It is recommended that dissolved oxygen be maintained at 7–8 mg L–1 to ensure proper functioning of the system.

#### *1.4.2. pH*

amount of artificial feed necessary to meet nutrient requirements under semi-intensive and intensive pond farming. It also includes nutritients not present in synthetic diets. Not to be dismissed lightly is the great savings in costs of providing fresh water and handling organic

The microorganisms that form the biofloc and process nitrogen compounds that pollute fish pond water need a source of energy for metabolism. In aquatic biofloc systems, there are three likely energy sources, depending on the nature of the organisms present in the biofloc system (bacteria–algae aggregations). Most important is sunlight, which is the main source of energy for phototrophic microorganisms, such as algae and vascular plants. Solar reception can be controlled or semi-controlled to support the needs of the biofloc crop and promote any type of biofloc system. The second source of energy is the forms of inorganic compounds that are used by the microorganisms that oxidize reduced forms of simple compounds, especially nitrogen to obtain energy. In fish farming, by metabolizing organic nitrogen and ammonia, nitrogen is oxidized to nitrite and nitrate. The third source of energy is organic compounds that are transformed by microorganisms that derive energy from the metabolic oxidation of

Both chemothrophic and phototrophic microorganisms naturally consume and deplete nitrogen concentrations in the water because of the relatively large quantity of energy sources that are present, but also because this is an indispensable function of the microorganisms.

Systems for cleaning and wastewater bioremediation, using microalgae and bacteria, is a widely known technology; however, in aquaculture systems, they should be used with caution because, with microalgae, the efficiency of the system depends directly on solar energy and intensity, which in open systems can be a risk because there is no control over productivity [7, 8]. An excess of primary production leads to constant consumption of oxygen during the night.

Biofloc or nitrifying colonies of bacteria in aquaculture requires incorporation of additional carbon sources into the system to adequately reproduce biofloc and maintain high density because carbohydrates in the system may be insufficient. Some of the main sources of carbon that can be used in aquaculture crops are: glycerol and sodium acetate, sugar, tapioca flour, wheat flour, and molasses [9, 10, 11, 12, 13, 14]. Use depends directly on the local costs of these products. For a biofloc system to operate efficiently, it is best to maintain a C/N ratio between 10:1 and 20:1 [15, 1, 16, 17, 10]. The amount of carbon depends on several factors, including: water quality, physiology and growing body density of the stock, quality and quantity of food to be cultivated, and solubility of the carbon source. The carbon additive must be continuously

Biofloc technology provides more efficient and sustainable aquaculture by reducing environ‐ mental impacts. One major advantage is reducing the volume of water required by the system during cultivation. Biofloc in the cultivation system uses the initial water volume throughout

Transformed energy is used to synthesis proteins from the nitrogen sources.

wastes in water discharge.

90 Sustainable Aquaculture Techniques

**1.2. Source of energy for bacteria and algae in biofloc**

organic carbon and transform it to carbon dioxide.

On cloudy days, productivity will reduce water quality.

monitored to ensure that the system is functioning properly.

**1.3. Ecological importance of using biofloc in aquaculture**

pH should range from 6.5 to 9, depending on the cultivated stock. Aslo, pH <6 and >8.5 usually affects the efficiency of the biofloc components, as well as growth and survival of the cultivated stock. In a biofloc system, pH varies during the day as concentration of carbon dioxide build up from the respiration of the stock. We recommend a range of pH 7.0–8.5, which favors functioning of biological cycles in the system. To maintain the pH balance, low pH can be adjusted with calcium hydroxide, potassium hydroxide, sodium carbonate, or sodium bicarbonate. High pH can be adjusted with carbonic acid, hydrochloric acid, sulfuric acid, phosphoric acid, or their salts.

transparency or turbidity. Using the Secchi disk, turbidity of 35–40 cm is acceptable. Turbidity produced by plankton in pond water should be >30 cm [29]. Higher cocentrations of plankton can increase oxygen demand of the fish stock during the night, when the same plankton communitythatcontributes totheturbidityanddissolvedoxygenduringthedaycompeteswith thefishstockatnight.Lowoxygennotonlydamagesthestock,butalsoaffectsthebioflocbacteria and plankton. Oxygen demand may increase up to 300% overnight. A simple method for maintaining the concentration of suspended matter at optimal levels is by sedimentation, using

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Temperature is one of the most influential parameters in fish pond systems because it affects the metabolic rate of cold-blooded fish and microorganisms, oxygen consumption, pH, and concentrations of ionized and un-ionized ammonia during cultivation. The temperature range will depend on the stock species and the bacteria adapted to the system temperature, as well as environmental and seasonal variations. This is important because biofloc systems are more efficient when water temperature is between 28 and 30 °C. [20] Reports that nitrifying bacteria can support a range from 8–30 °C, but efficiency is reduced by 50% at 16 °C and by 80% at 10 °C.

tanks with conical bottoms to remove solid waste in the recycling systems [19].

*1.4.5. Temperature*

#### *1.4.3. Dissolved solids and volatiles*

Bacteria depend on suspended solids as a substrate for adhesion and as a source of energy from carbon. We maintained concentrations of suspended matter in the range of 250–450 mg L–1, which ensures efficient bacterial activity. An excess of suspended matter can affect breathing processes in the stock species, lead to stress, or, in extreme cases, lead to death by clogging gills. Cultivation of Litopenaeus vannamei, in one biofloc system contained 453.0 ± 50.0 mg L–1 total suspended solids and 256.0 ± 106 mg L–1 volatile solids, which improved shrimp production and provided efficient exchange of oxygen [18].

#### *1.4.4. Turbidity*

In aquaculture systems, transparency is directly affected by the amount of organic and inorgan‐ ic matter in suspension (suspended solids, phytoplankton, zooplankton, and bacteria). Turbid‐ ityismeasuredwithaturbidimeterornephelometer,whichusesabeamoflightpassingthrough a water sample. In aquaculture, a Secchi disk is frequently used because turbidity is measured by the depth when the disk cannot be seen. Solar heating of the water is also affected by

transparency or turbidity. Using the Secchi disk, turbidity of 35–40 cm is acceptable. Turbidity produced by plankton in pond water should be >30 cm [29]. Higher cocentrations of plankton can increase oxygen demand of the fish stock during the night, when the same plankton communitythatcontributes totheturbidityanddissolvedoxygenduringthedaycompeteswith thefishstockatnight.Lowoxygennotonlydamagesthestock,butalsoaffectsthebioflocbacteria and plankton. Oxygen demand may increase up to 300% overnight. A simple method for maintaining the concentration of suspended matter at optimal levels is by sedimentation, using tanks with conical bottoms to remove solid waste in the recycling systems [19].

#### *1.4.5. Temperature*

*1.4.3. Dissolved solids and volatiles*

92 Sustainable Aquaculture Techniques

*1.4.4. Turbidity*

Bacteria depend on suspended solids as a substrate for adhesion and as a source of energy from carbon. We maintained concentrations of suspended matter in the range of 250–450 mg L–1, which ensures efficient bacterial activity. An excess of suspended matter can affect breathing processes in the stock species, lead to stress, or, in extreme cases, lead to death by clogging gills. Cultivation of Litopenaeus vannamei, in one biofloc system contained 453.0 ± 50.0 mg L–1 total suspended solids and 256.0 ± 106 mg L–1 volatile solids, which improved

In aquaculture systems, transparency is directly affected by the amount of organic and inorgan‐ ic matter in suspension (suspended solids, phytoplankton, zooplankton, and bacteria). Turbid‐ ityismeasuredwithaturbidimeterornephelometer,whichusesabeamoflightpassingthrough a water sample. In aquaculture, a Secchi disk is frequently used because turbidity is measured by the depth when the disk cannot be seen. Solar heating of the water is also affected by

shrimp production and provided efficient exchange of oxygen [18].

Temperature is one of the most influential parameters in fish pond systems because it affects the metabolic rate of cold-blooded fish and microorganisms, oxygen consumption, pH, and concentrations of ionized and un-ionized ammonia during cultivation. The temperature range will depend on the stock species and the bacteria adapted to the system temperature, as well as environmental and seasonal variations. This is important because biofloc systems are more efficient when water temperature is between 28 and 30 °C. [20] Reports that nitrifying bacteria can support a range from 8–30 °C, but efficiency is reduced by 50% at 16 °C and by 80% at 10 °C.

#### *1.4.6. Total Ammona-nitrogen*

Total Ammona-nitrogen is the excretion product of feces and urine of fish, uneaten food and matter in descomposition, phytoplankton and zooplankton. Ammonia-nitrogen toxicity on aquatic organisms has been attributed to ammonia or non-ionized ammonia (NH3) (gaseous), while the ionized ammonia or ammonium ion (NH4) is considered not significantly toxic or less toxic [42].

The reaction that occurs is as follows.


Ammonia-nitrogen toxicity in the unionized form (NH3), increases with a low oxygen concentration, high pH (alkaline) and a high temperature. With a low pH (acid) is less toxic. A high concentration of ammonia-nitrogen in the water has effects on the cultured organisms, causing blockage of the metabolism, affecting the balance of salts in the osmoregulation, which produces gill internal organ damage, immunosuppression and susceptibility to diseases, reduced growth and survival. In cultured crustacean as Litopenaeus vannamei, ammonianitrogen concentrations should be less than 1.2 and 6.5 mg / L in post-larvae and juveniles [36, 37]. The recommended concentrations less than 1.5 mg / L in cultures with biofloc.

#### *1.4.7. Nitrite-nitrogen*

They are a vital parameter for its high toxicity and for being a pollutant. The transformation process to ammonia-nitrogen to nitrite-nitrogen and their toxicity form depends on the amount of chlorides, temperature and oxygen concentration in the water. The main toxic effects of NO2 are those who have a direct effect of transport of oxygen, oxidation of important compounds and tissue damage. Nitrite-nitrogen in the larvae of M. rosenbergii tolerate concentrations of 2 mg / L, increasing their tolerance as they grow, and can support up to 16 mg / L of nitratenitrogen, however reduce its growth rate and culd cause their mortality [38]. Recommending nitrite-nitrogen concentration less than 2 mg / L in cultures with biofloc.

*1.4.8. Nitrate-nitrogen*

should not exceed 10.0 mg / L in biofloc culture.

Nitrate-nitrogen is the end product of aerobic nitrification [32], are considered the less toxic inorganic nitrogen compounds, but can be a potential problem when its levels increase and accumulate. The toxicity of these compounds is due to its effects on osmoregulation and possibly on oxygen transport [40]. For the specie M. rosenbergii, nitrate concentrations in brackish water must be less than 20 mg / L [41]. Recommending that nitrate concentrations

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Biofloc, a Technical Alternative for Culturing Malaysian Prawn *Macrobrachium rosenbergii* http://dx.doi.org/10.5772/57501 95

#### *1.4.8. Nitrate-nitrogen*

*1.4.6. Total Ammona-nitrogen*

94 Sustainable Aquaculture Techniques

The reaction that occurs is as follows.

Nonionized form Nontoxic form

*1.4.7. Nitrite-nitrogen*

less toxic [42].

Total Ammona-nitrogen is the excretion product of feces and urine of fish, uneaten food and matter in descomposition, phytoplankton and zooplankton. Ammonia-nitrogen toxicity on aquatic organisms has been attributed to ammonia or non-ionized ammonia (NH3) (gaseous), while the ionized ammonia or ammonium ion (NH4) is considered not significantly toxic or

**NH3 + H2O → NH4OH → NH+ 4 + OH-**

Its rate of conjugation with water depends of pH

37]. The recommended concentrations less than 1.5 mg / L in cultures with biofloc.

nitrite-nitrogen concentration less than 2 mg / L in cultures with biofloc.

Ammonia-nitrogen toxicity in the unionized form (NH3), increases with a low oxygen concentration, high pH (alkaline) and a high temperature. With a low pH (acid) is less toxic. A high concentration of ammonia-nitrogen in the water has effects on the cultured organisms, causing blockage of the metabolism, affecting the balance of salts in the osmoregulation, which produces gill internal organ damage, immunosuppression and susceptibility to diseases, reduced growth and survival. In cultured crustacean as Litopenaeus vannamei, ammonianitrogen concentrations should be less than 1.2 and 6.5 mg / L in post-larvae and juveniles [36,

They are a vital parameter for its high toxicity and for being a pollutant. The transformation process to ammonia-nitrogen to nitrite-nitrogen and their toxicity form depends on the amount of chlorides, temperature and oxygen concentration in the water. The main toxic effects of NO2 are those who have a direct effect of transport of oxygen, oxidation of important compounds and tissue damage. Nitrite-nitrogen in the larvae of M. rosenbergii tolerate concentrations of 2 mg / L, increasing their tolerance as they grow, and can support up to 16 mg / L of nitratenitrogen, however reduce its growth rate and culd cause their mortality [38]. Recommending

Ionized form Nontoxic form.

> Nitrate-nitrogen is the end product of aerobic nitrification [32], are considered the less toxic inorganic nitrogen compounds, but can be a potential problem when its levels increase and accumulate. The toxicity of these compounds is due to its effects on osmoregulation and possibly on oxygen transport [40]. For the specie M. rosenbergii, nitrate concentrations in brackish water must be less than 20 mg / L [41]. Recommending that nitrate concentrations should not exceed 10.0 mg / L in biofloc culture.

production of aquatic organisms under biofloc technology are apparent, so it is necessary to develop cultivation with omnivorous species in a scheme of sustainability and ecological

Biofloc, a Technical Alternative for Culturing Malaysian Prawn *Macrobrachium rosenbergii*

Among economically important crustaceans in aquaculture having omnivorous eating habits, the Malaysian prawn (*Macrobrachium rosenbergii*) has successfully adapted to farming condi‐ tions, thanks to their physical endurance, fast growth, and high survival rate. This species is widely distributed in tropical and subtropical areas and, compared with similar wild shrimp [27], are a suitable candidate for biofloc practices. Despite this, there are few attempts to cultivate this shrimp in a biofloc system, making it difficult to validate the technology for

At the laboratory facilities of the breeding and production technology institute at Boca del Rio, Veracruz, Mexico, cultivation of Malaysian prawns was undertaked for six months in rectan‐

with shade cloth providing 90% reduction of sunlight. During cultivation, a continuous air supply was provided by a 2 hp blower connected to a 1.5 inch PVC pipe at the bottom of the ponds. Placed in the pond were four clay bricks per m2 with 3 holes in each one. These served as dens for the prawns.The study measured the growth performance of the prawns under two conditions: biofloc shrimp farming and traditional farming, including standard water ex‐ changes in the latter treatment. During the study the prawns were fed twice daily (9:00 and 18:00 h) with a commercial shrimp diet (El Pedregal Silver Cup with 35% protein), by an estimated 20% of the initial biomass for the first month of cultivation. Subsequently adjusted percentage monthly food supplied in connection with the consumption and increased biomass (Table 1). To promote training and biofloc production, molasses added daily diluted in water as a carbon source in ponds, in a ratio of 20:1 C: N, according to the recommendations of [10],

**Month % Biomass (biofloc) % Biomass (traditional) Food per day (g) Molasses per day (g)**

During cultivation, physicochemical parameters were similar among treatments and within the tolerance range for growing Malaysian shrimp [28]. The average temperature was 25.90 ± 0.78 °C, dissolved oxygen 5.8 ± 0.55 mg L–1, pH 8.77 ± 0.18. Transparency in both treatments was within the range recommended by [29] for aquaculture crops (minimum visibility of 30

to 40 cm). If turbidity is greater, there is a substantial increase in oxygen demand.

Start 20 20 3.78 7.42 5 7.54 30.81 60.38 5 6.13 92.00 180.33 5 7.67 237.59 465.67 3 3.18 167.75 328.79 3 3.19 228.33 447.52

**Table 1.** Percentage of biomass per month to provide same amount of food in two treatments.

**2.1. Physicochemical parameters of water during cultivation**

, which were inside a shadehouse

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balance to obtain the best performance with the least environmental impact.

gular ponds 10 m × 2 m × 1.20 m high, with a capacity of 20 m3

application on commercial farms.

considering feed rate.

#### **1.5. Economic benefits of crops biofloc**

The economic advantages of biofloc systems to traditional pond farming are generally reflected in the profit margin, based largely on savings in feed, faster growth rates, and increased biomass during cultivation, which is related to high survival rates. However, biofloc systems have increased operating costs of the aeration system, which can be 10–40%, depending on the concentration of oxygen in ponds have to be maintained at 7–8 mg L–1, costs for the carbon source added to the system. Despite the foregoing, [21] reports savings of 14% in a shrimp biofloc system compared to traditional methods.

In our laboratory in one study, Malaysian prawn Macrobrachium rosenbergii raised in a biofloc system achieved a 13.27% saving in operating expenses. In a second study, tilapia Oreochromis niloticus raised in a biofloc system achieved a 12.90% savings in operating expenses compared with the costs in traditional pond farming of both species. The major savings in our study led to less pumping time for maintaining water quality in the system, an increase in survival from 10 to 30%, and an increase in final biomass average content from 20 to 45%. [22] report that, Nile tilapia (Oreochromis niloticus), net production was 45% higher in the biofloc tanks than in tanks without biofloc, where there was also a significant improvement in feed conversion. [23] indicates that the cultivation of Litopenaeus vannamei in biofloc systems led to a 30% decrease in the use of a commercial feed. In tilapia cultivation, producers can expect to reduce commercial feed by up to 20% [24]. Natural food produced by microalgae and bacteria in biofloc systems have high nutritional value.

#### **2. Biofloc cultivation of Malaysian prawn** *Macrobrachium rosenbergii*

Biofloc technology has been successfully applied mainly in shrimp farming [9]. Despite the positive results, few fish farms use this technique [25, 26]. The benefits associated with the production of aquatic organisms under biofloc technology are apparent, so it is necessary to develop cultivation with omnivorous species in a scheme of sustainability and ecological balance to obtain the best performance with the least environmental impact.

Among economically important crustaceans in aquaculture having omnivorous eating habits, the Malaysian prawn (*Macrobrachium rosenbergii*) has successfully adapted to farming condi‐ tions, thanks to their physical endurance, fast growth, and high survival rate. This species is widely distributed in tropical and subtropical areas and, compared with similar wild shrimp [27], are a suitable candidate for biofloc practices. Despite this, there are few attempts to cultivate this shrimp in a biofloc system, making it difficult to validate the technology for application on commercial farms.

At the laboratory facilities of the breeding and production technology institute at Boca del Rio, Veracruz, Mexico, cultivation of Malaysian prawns was undertaked for six months in rectan‐ gular ponds 10 m × 2 m × 1.20 m high, with a capacity of 20 m3 , which were inside a shadehouse with shade cloth providing 90% reduction of sunlight. During cultivation, a continuous air supply was provided by a 2 hp blower connected to a 1.5 inch PVC pipe at the bottom of the ponds. Placed in the pond were four clay bricks per m2 with 3 holes in each one. These served as dens for the prawns.The study measured the growth performance of the prawns under two conditions: biofloc shrimp farming and traditional farming, including standard water ex‐ changes in the latter treatment. During the study the prawns were fed twice daily (9:00 and 18:00 h) with a commercial shrimp diet (El Pedregal Silver Cup with 35% protein), by an estimated 20% of the initial biomass for the first month of cultivation. Subsequently adjusted percentage monthly food supplied in connection with the consumption and increased biomass (Table 1). To promote training and biofloc production, molasses added daily diluted in water as a carbon source in ponds, in a ratio of 20:1 C: N, according to the recommendations of [10], considering feed rate.


**Table 1.** Percentage of biomass per month to provide same amount of food in two treatments.

#### **2.1. Physicochemical parameters of water during cultivation**

**1.5. Economic benefits of crops biofloc**

96 Sustainable Aquaculture Techniques

biofloc system compared to traditional methods.

biofloc systems have high nutritional value.

The economic advantages of biofloc systems to traditional pond farming are generally reflected in the profit margin, based largely on savings in feed, faster growth rates, and increased biomass during cultivation, which is related to high survival rates. However, biofloc systems have increased operating costs of the aeration system, which can be 10–40%, depending on the concentration of oxygen in ponds have to be maintained at 7–8 mg L–1, costs for the carbon source added to the system. Despite the foregoing, [21] reports savings of 14% in a shrimp

In our laboratory in one study, Malaysian prawn Macrobrachium rosenbergii raised in a biofloc system achieved a 13.27% saving in operating expenses. In a second study, tilapia Oreochromis niloticus raised in a biofloc system achieved a 12.90% savings in operating expenses compared with the costs in traditional pond farming of both species. The major savings in our study led to less pumping time for maintaining water quality in the system, an increase in survival from 10 to 30%, and an increase in final biomass average content from 20 to 45%. [22] report that, Nile tilapia (Oreochromis niloticus), net production was 45% higher in the biofloc tanks than in tanks without biofloc, where there was also a significant improvement in feed conversion. [23] indicates that the cultivation of Litopenaeus vannamei in biofloc systems led to a 30% decrease in the use of a commercial feed. In tilapia cultivation, producers can expect to reduce commercial feed by up to 20% [24]. Natural food produced by microalgae and bacteria in

**2. Biofloc cultivation of Malaysian prawn** *Macrobrachium rosenbergii*

Biofloc technology has been successfully applied mainly in shrimp farming [9]. Despite the positive results, few fish farms use this technique [25, 26]. The benefits associated with the During cultivation, physicochemical parameters were similar among treatments and within the tolerance range for growing Malaysian shrimp [28]. The average temperature was 25.90 ± 0.78 °C, dissolved oxygen 5.8 ± 0.55 mg L–1, pH 8.77 ± 0.18. Transparency in both treatments was within the range recommended by [29] for aquaculture crops (minimum visibility of 30 to 40 cm). If turbidity is greater, there is a substantial increase in oxygen demand.

The average concentration of ammonia during the study remained at 0.1 mg L–1, N-nitrite was 0.5 mg L–1, and N-nitrate was 10 mg L–1 in both treatments, concentrations below what is considered toxic. Stability of the parameters in the biofloc system results from bacterial activity, which according to several authors, transform bacteria metabolites to the advantage of the shrimp because they are nutrients, as well as prevent accumulation of toxic products in the production system [1, 10]. By nitrification, where ammonia-nitrogen (N-NH3/N-NH4) is transformed by oxidation to nitrite-nitrogen (N-NO2) by bacteria of the genera Nitrosomonas and Nitrosococcus, and others. Nitrite-nitrogen is converted to nitrate-nitrogen (N-NO3) for nitrite-oxidizing bacteria of the genera *Nitrobacter* and *Nitrospira*. Ultimately, nitrate-nitrogen is reduced to nitrogen gas (denitrification) by bacteria of the genera *Pseudomonas* and *Achro‐ mobacter* and others [4, 5]. Unlike biofloc systems, water quality in traditional systems is maintained by continuous dilution of metabolites by influx of fresh water.

[30] raised Malaysian prawns for 182 days at a density of 10 prawns m–2, obtaining an average weight gain similar to our biofloc system; however, we raised 37 prawns m–2, and used organic and inorganic fertilized during they study. Prawns in biofloc showed a feed conversion rate that was significantly lower (2.27 ± 0.99), compared to traditional cultivation (2.74 ± 0.91), indicating that the biofloc system with the increased contact area and holes, can increase production of shrimp, along with a saving in consumption of commercial feed, which accord‐ ing to [24] comes from biofloc microorganisms that have high nutritional value and promote

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One of the major advantages of biofloc systems is reducing the volume of water required for maintaining good water quality. The biofloc system only recycles the water. It does not replace water with fresh water. Only losses from evaporation need replacement. In traditional treatments, 30% of the water is replaced every third day and 60% every two weeks (Table 2)

Initial fill 20 m3 Initial fill 20 m3 6 top-offs at 20% 24 m3 84 replacements at 30% 504 m3

Additional water to maintain biofloc water quality was 24 m3, while water to maintain traditional cultivation was 636 m3. The biofloc system saved about 96% of the water needed to maintain nontoxic conditions during production. An additional large saving in electrical expenses was achieved, estimated at about 96% during production time. This is similar to the

The potential of biofloc technology applied to shrimp farming to promote good aquaculture practices is manifold resource sustainability and environmental care and in reduction in energy consumption. This is important if we expect to maintain current growth rates of aquaculture. Aquaculture is now competing for space and water with other food-producing activities, so that properly designed and improved systems to maintain high biological load in a relatively small space is essential. Intensive biofloc system is a strategy that will promote

11 replacements at 60% 132 m3

**Total 44 m3 Total 656m3**

growth because the microorganisms contain up to 49% protein [31].

**Cultivation with biofloc Traditional cultivation**

**2.3. Saving water during biofloc cultivation**

to maintain water quality during cultivation.

**Table 2.** Water consumption in prawn cultivation.

the growth of aquaculture [32, 33].

findings of [1, 2, 3].

**3. Conclusion**

#### **2.2. Response variables**

Survival of the prawns in the two contrasting treatments, at the end of the study, was similar (85%) and is largely attributed to maintaining water quality. In the biofloc system, there was an increase of the contact surface for bacteria, which allows increased prawn density, com‐ pared to the traditional density (8–10 org m–2) and dens that increased the area of protection during molting (Pineda, 2005). High survival further suggests that the biofloc does not affect the health of the prawn. Prawns grown in the biofloc system reached a higher weight (15.17 ± 8.2 g) than prawns rose by the traditional method (12.57 ± 7.89 g; Fig. 3).

**Figure 3.** Weight gain of prawns raised under biofloc conditions (red) and traditional conditions (blue). The latter re‐ quired large inputs of fresh water.

[30] raised Malaysian prawns for 182 days at a density of 10 prawns m–2, obtaining an average weight gain similar to our biofloc system; however, we raised 37 prawns m–2, and used organic and inorganic fertilized during they study. Prawns in biofloc showed a feed conversion rate that was significantly lower (2.27 ± 0.99), compared to traditional cultivation (2.74 ± 0.91), indicating that the biofloc system with the increased contact area and holes, can increase production of shrimp, along with a saving in consumption of commercial feed, which accord‐ ing to [24] comes from biofloc microorganisms that have high nutritional value and promote growth because the microorganisms contain up to 49% protein [31].

#### **2.3. Saving water during biofloc cultivation**

The average concentration of ammonia during the study remained at 0.1 mg L–1, N-nitrite was 0.5 mg L–1, and N-nitrate was 10 mg L–1 in both treatments, concentrations below what is considered toxic. Stability of the parameters in the biofloc system results from bacterial activity, which according to several authors, transform bacteria metabolites to the advantage of the shrimp because they are nutrients, as well as prevent accumulation of toxic products in the production system [1, 10]. By nitrification, where ammonia-nitrogen (N-NH3/N-NH4) is transformed by oxidation to nitrite-nitrogen (N-NO2) by bacteria of the genera Nitrosomonas and Nitrosococcus, and others. Nitrite-nitrogen is converted to nitrate-nitrogen (N-NO3) for nitrite-oxidizing bacteria of the genera *Nitrobacter* and *Nitrospira*. Ultimately, nitrate-nitrogen is reduced to nitrogen gas (denitrification) by bacteria of the genera *Pseudomonas* and *Achro‐ mobacter* and others [4, 5]. Unlike biofloc systems, water quality in traditional systems is

Survival of the prawns in the two contrasting treatments, at the end of the study, was similar (85%) and is largely attributed to maintaining water quality. In the biofloc system, there was an increase of the contact surface for bacteria, which allows increased prawn density, com‐ pared to the traditional density (8–10 org m–2) and dens that increased the area of protection during molting (Pineda, 2005). High survival further suggests that the biofloc does not affect the health of the prawn. Prawns grown in the biofloc system reached a higher weight (15.17 ±

> 1 2 3 4 5 6 Mes

Period (month)

**Figure 3.** Weight gain of prawns raised under biofloc conditions (red) and traditional conditions (blue). The latter re‐

**= Traditional treat = Biofloc treat**

maintained by continuous dilution of metabolites by influx of fresh water.

8.2 g) than prawns rose by the traditional method (12.57 ± 7.89 g; Fig. 3).

**2.2. Response variables**

98 Sustainable Aquaculture Techniques

quired large inputs of fresh water.

Peso (gr)

Growht gain (g)

One of the major advantages of biofloc systems is reducing the volume of water required for maintaining good water quality. The biofloc system only recycles the water. It does not replace water with fresh water. Only losses from evaporation need replacement. In traditional treatments, 30% of the water is replaced every third day and 60% every two weeks (Table 2) to maintain water quality during cultivation.


**Table 2.** Water consumption in prawn cultivation.

Additional water to maintain biofloc water quality was 24 m3, while water to maintain traditional cultivation was 636 m3. The biofloc system saved about 96% of the water needed to maintain nontoxic conditions during production. An additional large saving in electrical expenses was achieved, estimated at about 96% during production time. This is similar to the findings of [1, 2, 3].

#### **3. Conclusion**

The potential of biofloc technology applied to shrimp farming to promote good aquaculture practices is manifold resource sustainability and environmental care and in reduction in energy consumption. This is important if we expect to maintain current growth rates of aquaculture. Aquaculture is now competing for space and water with other food-producing activities, so that properly designed and improved systems to maintain high biological load in a relatively small space is essential. Intensive biofloc system is a strategy that will promote the growth of aquaculture [32, 33].

Expanding systems of semi-intensive and intensive production aquatic animals will ead to increasing volumes of waste nitrogen and solids that foul the water [35]. Therefore, reducing effluents and effluent pollution to near zero can only benefit the downstream quality of water in rivers, estuaries, lagoons, and nearshore environments [35].

gradient in a nitrifying bioreactor: quantification by in situ hybridization and the use

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101

of microsensors. Applied and Environmental Microbiology 199; 65: 3690-3696.

lencia, Spain, 2007. Pp.184.

280: 117–123.

SessionAbstracts.aspx

400-401:105-110.

10.1111/j.1365-2109.2011.02848.x

phy 1987; 32 (6), 1239–1252.

[5] Ferrer, J., Seco A. Tratamientos Biológicos de Aguas Residuales. Editorial UPV. Va‐

[6] Shan H., Obbard J. Ammonia removal from prawn aquaculture water using immobi‐

[7] Avnimelech Y., Kochva M., Diab S. Development of controlled intensive aquaculture systems with a limited water exchange and adjusted carbon to nitrogen ratio. Israel

[8] Chamberlain G., Avnimalech Y., Mcintosh RP., Velasco M. Advantages of aerated microbial reuse systems with balanced C/N. In: Nutrient transformation and water

[9] Burford MA., Thompson PJ., McIntosh PR., Bauman RH., Pearson DC. The contribu‐ tion of flocculated material to shrimp *(Litopenaeus vannamei*) nutrition in a high-inten‐

[10] Asaduzzaman M., Wahab MA., Verdegem MCJ., Huque S., Salam MA., Azim M. C/N ratio control and substrate addition for periphyton development jointly enhance freshwater prawn *Macrobrachium rosenbergii* production in ponds. Aquaculture 2008;

[11] Kurup BM., Prajiht KK. Application of biofloc technology in the semi intensive cul‐ ture system of giant prawn *Macrobrachium rosenbergii*. World Aquaculture Society: Aquaculture 2010 San Diego, California 2010. https://www.was.org/.../meetings/

[12] Megahed, ME. The Effect of Microbial Biofloc on Water Quality, Survival and Growth of the Green Tiger Shrimp (*Penaeus Semisulcatus*) Fed with Different crude Protein Levels. Arabian Journal of the Aquaculture 2010; Vol.5 No. 2, p. 119-142. [13] Emerenciano M., Ballester ELC., Cavalli RO., Wasielesky, W. Biofloc technology ap‐ plication as a food source in a limited water exchanger nursery system for pink shrimp *Farfantepenaeus brasiliensis* (Latreille, 1817) 2011. Aquaculture Research,doi:

[14] Pérez-Fuentes JA., Pérez-Rostro CI., Hernández-Vergara MP. Pond-reared Malaysian prawn *Macrobrachium rosenbergii* with the biofloc system. Aquaculture 2013;

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sity, zeroexchangesystem. Aquaculture 2004; 232: 525–537.

While closed recirculation systems increase the costs of installation of equipment and opera‐ tion of a farm (pumps, clarifiers, biological filters), nitrifying bacteria to maintain water quality and reduce environmental impact of biofloc systems lead to a large increase the density of the fish and shrimp and their final biomass, which more than compensates for the initial invest‐ ment. In a closed, recirculating system, the biological treatment is within the water. Despite being efficient, recirculating systems require auxiliary equipment (pumps, filters, settlers) that increase installation costs, may limit production volumes, and increases operating costs resulting from continous pumping during the crop cycle.

Biofloc, as a culture, is a closed system that works in the same cultivations tanks to largely natural maintainance of the quality of water. In turn, the environmental impact is greatly reduced. Another advantage of biofloc systems is that the naturally occurring organisms in the system are used as complementary food, which reduces consumption of commercial feed, which usually contain products from marine fisheries. This helps to reduce the pressure on fisheries to provide ingredients for diets used in aquaculture.

#### **Author details**

Carlos I. Pérez-Rostro1 , Jorge A. Pérez-Fuentes1 and Martha P. Hernández-Vergara2

1 Laboratory of Genetic Improvement and Aquaculture Production, Technological Institute of Boca del Río, Veracruz, Mexico

2 Laboratory of Native Crustacean Aquaculture, Technological Institute of Boca del Río, Bo‐ ca del Río, Veracruz, Mexico

#### **References**


gradient in a nitrifying bioreactor: quantification by in situ hybridization and the use of microsensors. Applied and Environmental Microbiology 199; 65: 3690-3696.

[5] Ferrer, J., Seco A. Tratamientos Biológicos de Aguas Residuales. Editorial UPV. Va‐ lencia, Spain, 2007. Pp.184.

Expanding systems of semi-intensive and intensive production aquatic animals will ead to increasing volumes of waste nitrogen and solids that foul the water [35]. Therefore, reducing effluents and effluent pollution to near zero can only benefit the downstream quality of water

While closed recirculation systems increase the costs of installation of equipment and opera‐ tion of a farm (pumps, clarifiers, biological filters), nitrifying bacteria to maintain water quality and reduce environmental impact of biofloc systems lead to a large increase the density of the fish and shrimp and their final biomass, which more than compensates for the initial invest‐ ment. In a closed, recirculating system, the biological treatment is within the water. Despite being efficient, recirculating systems require auxiliary equipment (pumps, filters, settlers) that increase installation costs, may limit production volumes, and increases operating costs

Biofloc, as a culture, is a closed system that works in the same cultivations tanks to largely natural maintainance of the quality of water. In turn, the environmental impact is greatly reduced. Another advantage of biofloc systems is that the naturally occurring organisms in the system are used as complementary food, which reduces consumption of commercial feed, which usually contain products from marine fisheries. This helps to reduce the pressure on

1 Laboratory of Genetic Improvement and Aquaculture Production, Technological Institute

2 Laboratory of Native Crustacean Aquaculture, Technological Institute of Boca del Río, Bo‐

[1] Avnimelech Y., Lacher M. Carbon/nitrogen ratio as a control element in aquaculture

[2] Crab R., Defoirdt T., Bossier P., Verstraete W. Nitrogen removal techniques in aqua‐

[3] Schryver P., Crab R., Defoirdt T., Boon N., Verstraete W. The basics of bio-flocs tech‐

[4] Schramm A., D. de Beer A., Van den Heuvel S., Ottengraf S. Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp. along a macroscale

nology: The added valuefor aquaculture. Aquaculture 2008; 277: 125-137.

culture for a sustainable production. Aquaculture 2007; 270: 1-14.

and Martha P. Hernández-Vergara2

in rivers, estuaries, lagoons, and nearshore environments [35].

resulting from continous pumping during the crop cycle.

fisheries to provide ingredients for diets used in aquaculture.

systems. Aquaculture 1999; 176: 227–235.

, Jorge A. Pérez-Fuentes1

**Author details**

**References**

Carlos I. Pérez-Rostro1

100 Sustainable Aquaculture Techniques

of Boca del Río, Veracruz, Mexico

ca del Río, Veracruz, Mexico


[16] Avnimelech Y., Panjaitan P. Effects of carbon:nitrogen ratio control on water quality and shrimp growth in zero water exchange microcosms. Abstracts. World Aquacul‐ ture, Florence, Italy; 2006.

[28] New, M.B., Singholka, S. Cultivo de camarón de agua dulce. Manual para el cultivo

Biofloc, a Technical Alternative for Culturing Malaysian Prawn *Macrobrachium rosenbergii*

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[29] Arboleda-Obregón DA. Limnología aplicada a la acuicultura. Revista Electrónica de Veterinaria 2006, Vol. VII, No. 11. http://www.veterinaria.org/revistas/redvet/

[30] García-Rodríguez J., Granados-Ramírez JG., Quiroz-Castelán H., Molina-Astudillo FI., Díaz-Vargas M. Utilización de fertilizantes y desechos agrícolas para el creci‐ miento del langostino *Macrobrachium rosenbergii* (de man), en estanques rústicos. REDVET Revista electrónica de Veterinaria 2005; Vol. VI, Núm. 8, agosto-sin mes,

[31] Kuhn DD., Boardman GD., Lawrence AL., Marsh L., Flick-Junior GJ. Microbial floc meal as a replacement ingredient for fish meal and soybean protein in shrimp feed.

[32] Twarowska JG., Westerman PW., Losordo TM. Water treatment and waste character‐ ization of an intensive recirculating fish production system. Aquacult. Eng. 1997; 16:

[33] Thoman ES., Ingal ED., Davis DA., Arnold CR. A nitrogen budget for a closed, recir‐ culating mariculture system. Aquacultural Engeneering 2001; 24: 195-211.

[34] Goddar S. Feed Management in Intensive Aquaculture. Chapman & Hall,N.J.;1996. p.

[35] Páez-Osuna F. Retos y perspectivas de la camaronicultura en la zona costera. Revista

[36] Frías-Espericueta MG., Harfush-Meléndez M., Osuna-López JI., Páez-Osuna F. Acute toxicity of ammonia to juvenile shrimp *Penaeus vannamei* Boone. Bulletin of Environ‐

[37] Frías-Espericueta MG., Harfush-Meléndez M., Páez-Osuna F.Effects of ammonia on mortality and feeding of postlarvae shrimp *Litopenaeus vannamei*. Bulletin ofEnviron‐

[38] Mallasen M., Valenti WC. Effect of nitrite on larval development of giant river prawn Macrobrachium rosenbergii Centro Avançado do Pescado Continental, Instituto de Pesca, Caixa Postal 1052, 15025-970, São José do Rio Preto, SP, Brazilb São Paulo State University, Aquaculture Center (CAUNESP) and College of Agriculture and Veteri‐ narian Sciences,14884-900, Jaboticabal, SP, Brazil. Aquaculture 2006; 261:1292–1298. http://www.caunesp.unesp.br/publicacoes/artigos/valenti/RP\_MALLASEN\_Effect

[39] Pierce RH., Weeks JM. Nitrate toxicity to five species of marine fish. Journal of the World Aquaculture Society 1993; 24: 105-107. Colt JE., Armstrong DA. Nitrogen tox‐ icity to crustaceans, fish and molluscs. Proceedings of the Bio-Engineering Symposi‐

Latinoamericana de Recursos Naturales 2005; 1: 21-31.

mental Contamination and Toxicology 1999; 62: 646-652.

mental Contamination and Toxicology 2000; 65: 98-103.

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de *Macrobrachium rosenbergii*. FAO, Doc. Tec. Pesca 1984; (225): 118 pp.

n111106.html. 23/05/2010.

Aquaculture 2009; 296:51-57.

pp. 1-10.

133–147.

189.


[28] New, M.B., Singholka, S. Cultivo de camarón de agua dulce. Manual para el cultivo de *Macrobrachium rosenbergii*. FAO, Doc. Tec. Pesca 1984; (225): 118 pp.

[16] Avnimelech Y., Panjaitan P. Effects of carbon:nitrogen ratio control on water quality and shrimp growth in zero water exchange microcosms. Abstracts. World Aquacul‐

[17] Hargreaves JA. Photosynthetic suspended-growth systems in aquaculture. Aquac.

[18] Ray JA., Lewis LB., Browdy LC., Leffler WJ. Suspended solids removal to improve shrimp (Litopenaeus vannamei) production and an evaluation of a plant-based feed in minimal-exchange, superintensive culture systems. Aquaculture 2010; 299:89-98.

[19] Rakocy JE. Tank Culture of Tilapia. Southern Regional Aquaculture Center (SRAC) 1989. Publication Number 282. Texas Agricultural Extension Service, Texas A&M

[20] Gerardi M. Nitrification and denitrification in the activated sludge process 2002; Wi‐

[21] Hanson TR., Posadas BC., Samocha, T.M., Stokes AD., Losordo TM., Browdy, C.L. Economic factors critical to the profitability of suer-intensive biofloc recirculating shrimp production system for marine shrimp Litopeneus vannamei. Pages 267-283 in C.L. Browndy and D.E. Jory, eds. The resing Tide,Proceedings of the Special Session on Sustainable Shrimp Farmin, World Aquaculture 2009.The World Aquaculture So‐

[22] Azim ME., Little, DC. The biofloc technology (BFT) in indoor tanks: Water quality, biofloc composition, and growth and welfare of Nile tilapia (*Oreochromis niloticus*).

[23] Avnimelech Y. Biofloc Tecnology – A practical guide book, 2nd edition. The World

[24] Ekasari J., Crab, R., Verstraete W. Primary Nutritional Content of Bio-flocs Cultured with Different Organic Carbon Sources and Salinity. *HAYATI Journal of Biosciences*

[25] Milstein A., Avnimelech Y., Zoran, M., Josep D. Growth performance of hybrid bass and hybrid tilapia in conventional and active suspension intensive ponds. Israeli

[26] Serfling SA. Microbial flocs. Natural treatment method supports freshwater, June 2006, marine species in recirculating systems. Global Aquaculture Advocate 2006;

[27] Martínez-Córdova LR., Porchas-Cornejo MA., Villarreal-Colmenares H., Calderon-Perez JA. Winter culture of yellow leg shrimp *Penaeus californiensis* in aerated ponds with low water exchange. *Journal of the World Aquaculture Society* 1998; 29(1): 120-124.

ture, Florence, Italy; 2006.

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Eng. 2006; 34: 344–363.

University, College Station, Texas, USA. Pp. 4.

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34–36.


um for Fish Culture. Fish Culture Section of the American Fisheries Society 1981; (FCS Publ. 1): 34-47.

**Chapter 4**

**Sustainable Technique for Selected Live Feed Culture**

Sustainability in the aquaculture industry depends on several factors including the minimum production cost in comparison to the yield, unexpected environmental conditions which affect the farm and practices in the farm management itself. These factors are inter-connected and always incur a synergistic effect on the issue of sustainability. Live feeds as the fundamental needs for larval rearing and fry production have to be prioritised for sustainable farming activity. Dependency on imported sources of live feeds or inert feed will increase the produc‐ tion cost. Thus, the continued activity of screening, stocking and maintaining some local

Live feeds are an important basic diet for newly-hatched fish and shrimp larvae as they still have an incomplete digestive system and are lacking in enzymes. They are still at a very young stage to generate their own required nutrients or convert them from any pre-cursor obtained from a diet. They need a ready-made diet with readily available nutrient to be absorbed through their digestive system. There have been many species suggested or tested for their potential as live feed. All test animals were mostly zooplankton in nature and must meet the requirement as live feed. They must be in a compatible size with the mouth size or gape of the larvae predator, or they cannot be swallowed. Since larvae are still weak to track down the food, the wave created by the prey will be a great help, thus 'active' swimming prey is preferred. The most important role of a prey is the ability to supply energy and other nutrients which are essential for the larval survival and growth. Live feeds, as the starter diet in larval rearing and fry production must be continuous in supply. Good, nutritious and compatiblesize prey must be able to reproduce fast to meet the requirement and adaptable to a simple

> © 2014 Kassim et al.; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

species as an option for live feed production is economically necessary.

Zaleha Kassim, Akbar John, Lim Keng Chin,

Additional information is available at the end of the chapter

http://dx.doi.org/10.5772/57212

mass-production technique.

**1. Introduction**

Nur Farahiyah Zakaria and Nur Hidayah Asgnari


## **Sustainable Technique for Selected Live Feed Culture**

Zaleha Kassim, Akbar John, Lim Keng Chin, Nur Farahiyah Zakaria and Nur Hidayah Asgnari

Additional information is available at the end of the chapter

http://dx.doi.org/10.5772/57212

#### **1. Introduction**

um for Fish Culture. Fish Culture Section of the American Fisheries Society 1981;

[40] New MB. Farming freshwater prawns: a manual for the culture of the giant river prawn (*Macrobrachium rosenbergii*). FAO Fisheries Technical Paper No. 428. FAO,

[41] Emerson K, Russo RC., Lund RE., Thurston RV. (1975). Aqueous ammonia equilibri‐ um calculations: effect of pH and temperature. Journal of the Fisheries Research

(FCS Publ. 1): 34-47.

104 Sustainable Aquaculture Techniques

Rome, Italy, 2002. 212p.

Board of Canada 1975; 32: 2379-2383.

Sustainability in the aquaculture industry depends on several factors including the minimum production cost in comparison to the yield, unexpected environmental conditions which affect the farm and practices in the farm management itself. These factors are inter-connected and always incur a synergistic effect on the issue of sustainability. Live feeds as the fundamental needs for larval rearing and fry production have to be prioritised for sustainable farming activity. Dependency on imported sources of live feeds or inert feed will increase the produc‐ tion cost. Thus, the continued activity of screening, stocking and maintaining some local species as an option for live feed production is economically necessary.

Live feeds are an important basic diet for newly-hatched fish and shrimp larvae as they still have an incomplete digestive system and are lacking in enzymes. They are still at a very young stage to generate their own required nutrients or convert them from any pre-cursor obtained from a diet. They need a ready-made diet with readily available nutrient to be absorbed through their digestive system. There have been many species suggested or tested for their potential as live feed. All test animals were mostly zooplankton in nature and must meet the requirement as live feed. They must be in a compatible size with the mouth size or gape of the larvae predator, or they cannot be swallowed. Since larvae are still weak to track down the food, the wave created by the prey will be a great help, thus 'active' swimming prey is preferred. The most important role of a prey is the ability to supply energy and other nutrients which are essential for the larval survival and growth. Live feeds, as the starter diet in larval rearing and fry production must be continuous in supply. Good, nutritious and compatiblesize prey must be able to reproduce fast to meet the requirement and adaptable to a simple mass-production technique.

© 2014 Kassim et al.; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

#### **1.1. Copepods as live feeds**

The conventional live feed, brine shrimp and rotifers, are considered unsuitable as live feed if compared to copepods in term of nutritional value. *Artemia* sp. is deficient in polyunsaturated fatty acids (PUFAs), thus it needs to be enriched before feeding [1, 2]. Similarly, rotifer have poor nutritional value and are small in size [3]. On the other hand, copepod diets were proven to increase the growth of larval marine fish compared to diet of rotifers *Brachionus plicatilis*, [4, 5] or *Artemia* [4]. The potential use of copepods as live feed due to their excellent fatty acid content has been highlighted by using an example, a paracalanid [6]. They improved the quality of the cultured organism, particularly the larval stages. The superiority of copepods over other live feed such as brine shrimp and rotifers was further confirmed [7]. They have the appropriate ratio of docosahexaenoic acid (DHA) to eicosapentaenoic acid (EPA) which will improve the growth and survival of fish larvae if compared to the conventional live feeds [8]. Nonetheless, it is reminded that copepods could be better used as supplement rather than a sole diet in larval rearing, unless they are used for some high-valued commercial reef fish due to the high operation cost [9]. The possibility of using copepods, particularly the harpac‐ ticoids as alternative live feed in fish larval rearing has been stressed [10] and it is confirmed that the nutritional quality of harpacticoid copepods as live feed is extremely high [11,12]. *Macrosetella gracilis*, a planktonic harpacticoid copepod, is also reported to have better diet quality when compared to *Artemia* [13].

**1.2. Microalgae**

algae would scale down the operational cost.

Microalgae are a diverse group of unicellular autotrophs inhabiting almost all aquatic water bodies. Microalgae are rich in many specific and attractive compounds [22] and their nutri‐ tional values for aquaculture had been highlighted [23]. Production of microalgae is manda‐ tory in the hatchery as it is a basic and nutritious diet for live feed, specifically the zooplankton. However, its mass production is generally costly due to huge manpower, space requirements and operation which usually related to the cost of the energy used. A good strategy in manipulating the culture environment, particularly during the production process of micro‐

Sustainable Technique for Selected Live Feed Culture

http://dx.doi.org/10.5772/57212

107

Light plays a fundamental role in the development of microalgae through photosynthesis. It is one of the major environmental factors which control the performance of microalgae phototrophic growth and productivity [24, 25, 26]. Light may either be natural or supplied by fluorescent tubes giving the maximum effective radiation which can be absorbed by the pigments of the microalgae. Light intensity plays a vital role, but the requirements vary with the culture depth or volume as well as the density of the algae in the culture. At a higher volume, light intensity must be increased to enable it to penetrate through the culture. However, an extreme light intensity may result in photo-inhibition which reduces the photosynthetic rates and growth [27,28]. Furthermore, overheating due to artificial or natural illumination should be avoided in microalgal culture. The most often employed light intensity is 1000 lux which is suitable for Erlenmeyer flasks but 5000-10000 lux is needed for a greater volume of microalgal culture [29, 30]. The duration of illumination can be varied where photosynthesis of microalgae can be enhanced or increased in the light/dark (LD) cycle (usually 12:12 or 14:10 LD, maximum 16:8 LD). For some microalgae, photosynthesis rate could also be increased exponentially with increasing light/dark frequencies where a longer period of dark in relation to the light period can further increase photosynthetic efficiencies but not vice versa

[31]. The illuminations also affect the nutrient utilisation in the culture vessel [32].

stored at 2-4ºC for 1-8 weeks with good shelf life [39].

A cost-effective and nutritionally-adequate alternative to costly maintenance of live microal‐ gae is the production of moist-microalgae concentrates. It is seen to simplify hatchery proce‐ dures and has shown promising potential in the aquaculture industry [33,34].The storing of microalgae concentrates in moist form under low temperature can preserve their high nutrient composition and excellent cell viability [35,33]. Juvenile pacific oyster (*Crassostrea gigas*) fed with different algal pastes had shown significant improvement in growth rate than oyster fed with other diets [36]. Concentrates of *Chaetoceros muelleri* and *Tetraselmis pseudonana* refriger‐ ated for 6 weeks at 4°C were found to promote similar survival rates of the tiger prawn *Penaeus monodon* larvae fed with live microalgae [37]. Supplementation of microalgae concentrates to bivalves, oysters and scallops have also recorded the same extent of growth rates as live microalgae [38,34]. It has been documented that most of the demand for mariculture feed in Japan is supplied with live and fresh microalgae which is thickly concentrated and readily

Preparation of concentrated condition of microalgae usually involves centrifugation techni‐ que. Nonetheless, although this technique has been successfully applied and utilised for preparing microalgae concentrates, it poses some limitations. First, the process involves

Despite these positive findings, rotifers and *Artemia* continue to be the live feeds of choice in commercial hatcheries, because copepods are not currently cultured at sufficient densities to be economically efficient on a commercial scale [14, 15, 16]. In term of culture condition, it was found that the optimum condition for the high production of a tropical harpacticoid copepod, *Pararobertsonia* sp., was at salinity 35psu and temperature of 25o C [17]. The fluctuation in salinity, pH and temperature in the culture vessel would definitely influence the reproduction and population growth of copepods such as the harpacticoids if kept in small containers [18]. Nonetheless, a strategy to produce harpacticoid in large quantities for hatchery use by using a tray-culture method has been suggested [19].

Another copepod group, a Cyclopoida, *Apocyclops dengizicus* was found to increase the survival and growth of *Panaeus monodon* postlarvae when used as live feed [20]. Cyclopoids are omnivorous, and can be fed a mixture of feeds, mainly phytoplankton or a combination of phytoplankton, yeast or other feeds [7]. As for *Apocyclops panamensis*, there is a report on a successful technique for outdoor ponds [15]. Information on the use of copepods in aquacul‐ ture, particularly from the tropical *Apocyclops* sp., is still scarce. The species reported in abundance and potentially exploited as live feeds for shrimp post-larvae in Malaysia for example is *A*. *dengizicus*. A new species, *Apocyclopsramkhamhaengi*, has been described [21] and added to the present report of 3 species of *Apocyclops* recognised from Asia: *A*. *dengizicus* (Lepeshkin), *A*. *royi* (Lindberg), and *A*. *borneonensis* (Lindberg). This new species is found in abundance in eastern Thailand water and has yet to be determined for its potential in aqua‐ culture. Planktonic copepods such as cyclopoids feed on other plankton including planktonic microalgae. To maintain planktonic copepods in the hatchery or aquaculture ponds, a continuous supply of their diet, particularly the microalgae, will definitely be required.

#### **1.2. Microalgae**

**1.1. Copepods as live feeds**

106 Sustainable Aquaculture Techniques

quality when compared to *Artemia* [13].

a tray-culture method has been suggested [19].

The conventional live feed, brine shrimp and rotifers, are considered unsuitable as live feed if compared to copepods in term of nutritional value. *Artemia* sp. is deficient in polyunsaturated fatty acids (PUFAs), thus it needs to be enriched before feeding [1, 2]. Similarly, rotifer have poor nutritional value and are small in size [3]. On the other hand, copepod diets were proven to increase the growth of larval marine fish compared to diet of rotifers *Brachionus plicatilis*, [4, 5] or *Artemia* [4]. The potential use of copepods as live feed due to their excellent fatty acid content has been highlighted by using an example, a paracalanid [6]. They improved the quality of the cultured organism, particularly the larval stages. The superiority of copepods over other live feed such as brine shrimp and rotifers was further confirmed [7]. They have the appropriate ratio of docosahexaenoic acid (DHA) to eicosapentaenoic acid (EPA) which will improve the growth and survival of fish larvae if compared to the conventional live feeds [8]. Nonetheless, it is reminded that copepods could be better used as supplement rather than a sole diet in larval rearing, unless they are used for some high-valued commercial reef fish due to the high operation cost [9]. The possibility of using copepods, particularly the harpac‐ ticoids as alternative live feed in fish larval rearing has been stressed [10] and it is confirmed that the nutritional quality of harpacticoid copepods as live feed is extremely high [11,12]. *Macrosetella gracilis*, a planktonic harpacticoid copepod, is also reported to have better diet

Despite these positive findings, rotifers and *Artemia* continue to be the live feeds of choice in commercial hatcheries, because copepods are not currently cultured at sufficient densities to be economically efficient on a commercial scale [14, 15, 16]. In term of culture condition, it was found that the optimum condition for the high production of a tropical harpacticoid copepod,

salinity, pH and temperature in the culture vessel would definitely influence the reproduction and population growth of copepods such as the harpacticoids if kept in small containers [18]. Nonetheless, a strategy to produce harpacticoid in large quantities for hatchery use by using

Another copepod group, a Cyclopoida, *Apocyclops dengizicus* was found to increase the survival and growth of *Panaeus monodon* postlarvae when used as live feed [20]. Cyclopoids are omnivorous, and can be fed a mixture of feeds, mainly phytoplankton or a combination of phytoplankton, yeast or other feeds [7]. As for *Apocyclops panamensis*, there is a report on a successful technique for outdoor ponds [15]. Information on the use of copepods in aquacul‐ ture, particularly from the tropical *Apocyclops* sp., is still scarce. The species reported in abundance and potentially exploited as live feeds for shrimp post-larvae in Malaysia for example is *A*. *dengizicus*. A new species, *Apocyclopsramkhamhaengi*, has been described [21] and added to the present report of 3 species of *Apocyclops* recognised from Asia: *A*. *dengizicus* (Lepeshkin), *A*. *royi* (Lindberg), and *A*. *borneonensis* (Lindberg). This new species is found in abundance in eastern Thailand water and has yet to be determined for its potential in aqua‐ culture. Planktonic copepods such as cyclopoids feed on other plankton including planktonic microalgae. To maintain planktonic copepods in the hatchery or aquaculture ponds, a continuous supply of their diet, particularly the microalgae, will definitely be required.

C [17]. The fluctuation in

*Pararobertsonia* sp., was at salinity 35psu and temperature of 25o

Microalgae are a diverse group of unicellular autotrophs inhabiting almost all aquatic water bodies. Microalgae are rich in many specific and attractive compounds [22] and their nutri‐ tional values for aquaculture had been highlighted [23]. Production of microalgae is manda‐ tory in the hatchery as it is a basic and nutritious diet for live feed, specifically the zooplankton. However, its mass production is generally costly due to huge manpower, space requirements and operation which usually related to the cost of the energy used. A good strategy in manipulating the culture environment, particularly during the production process of micro‐ algae would scale down the operational cost.

Light plays a fundamental role in the development of microalgae through photosynthesis. It is one of the major environmental factors which control the performance of microalgae phototrophic growth and productivity [24, 25, 26]. Light may either be natural or supplied by fluorescent tubes giving the maximum effective radiation which can be absorbed by the pigments of the microalgae. Light intensity plays a vital role, but the requirements vary with the culture depth or volume as well as the density of the algae in the culture. At a higher volume, light intensity must be increased to enable it to penetrate through the culture. However, an extreme light intensity may result in photo-inhibition which reduces the photosynthetic rates and growth [27,28]. Furthermore, overheating due to artificial or natural illumination should be avoided in microalgal culture. The most often employed light intensity is 1000 lux which is suitable for Erlenmeyer flasks but 5000-10000 lux is needed for a greater volume of microalgal culture [29, 30]. The duration of illumination can be varied where photosynthesis of microalgae can be enhanced or increased in the light/dark (LD) cycle (usually 12:12 or 14:10 LD, maximum 16:8 LD). For some microalgae, photosynthesis rate could also be increased exponentially with increasing light/dark frequencies where a longer period of dark in relation to the light period can further increase photosynthetic efficiencies but not vice versa [31]. The illuminations also affect the nutrient utilisation in the culture vessel [32].

A cost-effective and nutritionally-adequate alternative to costly maintenance of live microal‐ gae is the production of moist-microalgae concentrates. It is seen to simplify hatchery proce‐ dures and has shown promising potential in the aquaculture industry [33,34].The storing of microalgae concentrates in moist form under low temperature can preserve their high nutrient composition and excellent cell viability [35,33]. Juvenile pacific oyster (*Crassostrea gigas*) fed with different algal pastes had shown significant improvement in growth rate than oyster fed with other diets [36]. Concentrates of *Chaetoceros muelleri* and *Tetraselmis pseudonana* refriger‐ ated for 6 weeks at 4°C were found to promote similar survival rates of the tiger prawn *Penaeus monodon* larvae fed with live microalgae [37]. Supplementation of microalgae concentrates to bivalves, oysters and scallops have also recorded the same extent of growth rates as live microalgae [38,34]. It has been documented that most of the demand for mariculture feed in Japan is supplied with live and fresh microalgae which is thickly concentrated and readily stored at 2-4ºC for 1-8 weeks with good shelf life [39].

Preparation of concentrated condition of microalgae usually involves centrifugation techni‐ que. Nonetheless, although this technique has been successfully applied and utilised for preparing microalgae concentrates, it poses some limitations. First, the process involves exposure of cells to high gravitational and shear forces deteriorating the cell structure with the leaking of nutritional contents. Second, centrifuging large volumes of cultures is timeconsuming and requires expensive equipments. Several alternative procedures, less damaging to the cells, which can be applied are filtration [40], foam fractionation [41] and flocculation [33, 34, 38]. Previous studies have observed the excellence of ultrafiltration technique in preserving and retaining the cellular structure and properties of fragile algal cells with little loss of material [42, 43].

avoid biasing results. Cell biovolume was calculated as assumed round-shape volume with

Specific growth rate was calculated from the expression as proposed [45] which is shown

Where, μ = specific growth rate, F1= biomass at time harvest, t1 and F0= biomass at time zero, t0. Doubling time was computed based on the formula as proposed [45] which is shown below:

All microalgae cultures were grown to late-logarithmic phase for the preparation of concen‐ trates via ultrafiltration technique. The concentrated aqueous suspensions of microalgae were filtered through a membrane filter (0.1μm pore size) to remove access water from the suspen‐ sion without rupturing the microalgae, thereby obtaining the microalgae concentrate or paste. Cell viabilities of microalgae concentrates were assessed using Eosin dye as a viability assay on the basis of its penetration into non viable-cells based on the expression as proposed [46]:

The harvesting efficiency or percentage recovery (%) was evaluated by comparing the remaining total number of cells in the concentrate with the total number of cells before filtration

Where, CB = total number of cells before filtration, CA = total number of cells after filtration Microalgal concentrates were compared to live cultures of the same algae as food for marine copepods. Copepods were obtained from existing culture in UMT's laboratory. Two different sets of cultures were done using a Petri dish where each of them was fed with live and

( ) Harvesting efficiency Percentage recovery % = C C x 100 B A (5)

Doubling time l 2ò og ( ) = ( )

p

( ) ( ) 10 10 Specific growth rate μ = ln F /F t -t (2)

m

( ) Viable cells x 100 Cell viability % = Total cells (4)

(1)

Sustainable Technique for Selected Live Feed Culture

http://dx.doi.org/10.5772/57212

109

(3)

<sup>3</sup> Cell volume = 4 3 R

the following formula proposed by Sun and Liu [44]:

Where, T = doubling time, μ = specific growth rate.

Where, π= 3.142, R= radius of cell

with the following expression:

below:

The level of natural resources exploitation for aquaculture purposes is commonly high. Coastal land and mangroves forests always become the target area for brackish-water aquaculture ponds. The water source of this area, which is always from the nearby river estuary and lagoon, is also used as the live feeds (zooplankton and microalgae) source. Nonetheless, the supply is always seasonal and could become unavailable unexpectedly due to many factors and natural phenomena. This chapter aims to discuss the possible ways to produce local live feeds, a marine microalgae species and a planktonic copepod, sustainably using a simple technique for larvalrearing purposes. Maintaining local species is hypothesised to be more economical and practical. The usage of the microalgae as an enrichment element for live feed copepods will be proved.

#### **2. Methodology**

#### **Experiment 1: Production of** *Chlorella vulgaris* **Concentrate Isolated from Bidong Island and Assessment as Copepod Diet**

Seawater samples were obtained from Bidong Island, Terengganu. The collection was made by lowering a Niskin water sampler to a required depth, following the light-penetration depth. Concentrated water samples were then transferred into chilled, white-plastic containers and brought back to the laboratory for microalgae isolation process. Successive plating out on agar plates was performed in order to select the desired marine *Chlorella* colonies. Monospecific colonies were then transferred into trial culture tubes before scaling up into larger volumes of Erlenmeyer flasks.

The microalgae was then cultured for the preparation of moist concentrates in the temperature controlled room (20±2°C) using the standard batch culture method. Triplicate of activelygrowing starter cultures were inoculated into 30 litres acrylic tanks enriched with Conway medium under constant illumination (cool-white type; 110 watts). All cultures were started with an initial inoculum of 2x106 cells mL-1. Cultures were aerated continuously using humidified filtered air. Evaporation in the culturing tanks was kept to a minimum by covering the top of the tanks. Cellular density of microalgae cultures was monitored daily using a Neubauer haemocytometer [29]. Scanning electron microscopic observation was also done to determine the ultra structure of the cell. Measurement of radius and height of the target microalgae cells was done under the advanced research microscope (Model Nikon Eclipse 80 i, Japan) and twenty individual cells were measured for the calculation of cell biovolume to avoid biasing results. Cell biovolume was calculated as assumed round-shape volume with the following formula proposed by Sun and Liu [44]:

$$\text{Cell volume} = 4 \text{\textdegree } \pi \,\text{R}^3\tag{1}$$

Where, π= 3.142, R= radius of cell

exposure of cells to high gravitational and shear forces deteriorating the cell structure with the leaking of nutritional contents. Second, centrifuging large volumes of cultures is timeconsuming and requires expensive equipments. Several alternative procedures, less damaging to the cells, which can be applied are filtration [40], foam fractionation [41] and flocculation [33, 34, 38]. Previous studies have observed the excellence of ultrafiltration technique in preserving and retaining the cellular structure and properties of fragile algal cells with little

The level of natural resources exploitation for aquaculture purposes is commonly high. Coastal land and mangroves forests always become the target area for brackish-water aquaculture ponds. The water source of this area, which is always from the nearby river estuary and lagoon, is also used as the live feeds (zooplankton and microalgae) source. Nonetheless, the supply is always seasonal and could become unavailable unexpectedly due to many factors and natural phenomena. This chapter aims to discuss the possible ways to produce local live feeds, a marine microalgae species and a planktonic copepod, sustainably using a simple technique for larvalrearing purposes. Maintaining local species is hypothesised to be more economical and practical. The usage of the microalgae as an enrichment element for live feed copepods will be

**Experiment 1: Production of** *Chlorella vulgaris* **Concentrate Isolated from Bidong Island**

Seawater samples were obtained from Bidong Island, Terengganu. The collection was made by lowering a Niskin water sampler to a required depth, following the light-penetration depth. Concentrated water samples were then transferred into chilled, white-plastic containers and brought back to the laboratory for microalgae isolation process. Successive plating out on agar plates was performed in order to select the desired marine *Chlorella* colonies. Monospecific colonies were then transferred into trial culture tubes before scaling up into larger volumes of

The microalgae was then cultured for the preparation of moist concentrates in the temperature controlled room (20±2°C) using the standard batch culture method. Triplicate of activelygrowing starter cultures were inoculated into 30 litres acrylic tanks enriched with Conway medium under constant illumination (cool-white type; 110 watts). All cultures were started

humidified filtered air. Evaporation in the culturing tanks was kept to a minimum by covering the top of the tanks. Cellular density of microalgae cultures was monitored daily using a Neubauer haemocytometer [29]. Scanning electron microscopic observation was also done to determine the ultra structure of the cell. Measurement of radius and height of the target microalgae cells was done under the advanced research microscope (Model Nikon Eclipse 80 i, Japan) and twenty individual cells were measured for the calculation of cell biovolume to

cells mL-1. Cultures were aerated continuously using

loss of material [42, 43].

108 Sustainable Aquaculture Techniques

proved.

**2. Methodology**

Erlenmeyer flasks.

**and Assessment as Copepod Diet**

with an initial inoculum of 2x106

Specific growth rate was calculated from the expression as proposed [45] which is shown below:

$$\text{Specific growth rate } \left(\mu\right) = \ln\left(\text{F}\_1/\text{F}\_0\right) / \text{t}\_1 \text{-t}\_0 \tag{2}$$

Where, μ = specific growth rate, F1= biomass at time harvest, t1 and F0= biomass at time zero, t0. Doubling time was computed based on the formula as proposed [45] which is shown below:

$$\text{Doubling time} \left( \text{ò} \right) = \log \left( 2 \right) / \mu \tag{3}$$

Where, T = doubling time, μ = specific growth rate.

All microalgae cultures were grown to late-logarithmic phase for the preparation of concen‐ trates via ultrafiltration technique. The concentrated aqueous suspensions of microalgae were filtered through a membrane filter (0.1μm pore size) to remove access water from the suspen‐ sion without rupturing the microalgae, thereby obtaining the microalgae concentrate or paste. Cell viabilities of microalgae concentrates were assessed using Eosin dye as a viability assay on the basis of its penetration into non viable-cells based on the expression as proposed [46]:

$$\text{Cell viability} \left( \% \right) = \frac{\text{Yield cells} \times 100}{\text{Total cells}} \tag{4}$$

The harvesting efficiency or percentage recovery (%) was evaluated by comparing the remaining total number of cells in the concentrate with the total number of cells before filtration with the following expression:

$$\text{Harvesting efficiency} / \text{Percentage recovery} \left( \% \right) = \text{C}\_{\text{B}} / \text{C}\_{\text{A}} \times 100 \tag{5}$$

Where, CB = total number of cells before filtration, CA = total number of cells after filtration

Microalgal concentrates were compared to live cultures of the same algae as food for marine copepods. Copepods were obtained from existing culture in UMT's laboratory. Two different sets of cultures were done using a Petri dish where each of them was fed with live and microalgae concentrate respectively. Individual copepods were counted daily under the Leica stereo microscope before being fed (1 drop). The maximum specific growth rate (K) was calculated [47] as shown below:

$$\mathbf{K} = \ln \left( \mathbf{X}\_1 / \mathbf{X}\_0 \right) / \mathbf{t}\_1 \text{-t}\_0 \tag{6}$$

**Experiment 3: Low-Cost Commercial Fertiliser for Mass Culture of Marine** *Chlorella*

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111

An investigation was made to see the adaptability of the local marine *C. vulgaris* to the natural conditions in an aquaculture farm. This means that they need to adapt to different fertilisers other than Conway media, different salinity regimes and uncontrolled temperatures. Prepa‐ ration of NPK-based fertiliser was made by manipulating the ratio of nitrogen, phosphorus and potassium source as summarises in Table 1. Each of the different N:P:K ratio treatments

Culture containers were well-cleaned with bleach and rinsed thoroughly before filling up with 1L of the farm water (salinity of between 20-25ppt). The marine *C.vulgaris* concentrate was prepared and 1mL of it was inoculated into the container and 1mL of the fertilizer was added. The containers were vigorously aerated to provide required quantity of oxygen and to keep cells and media in suspension. The containers were kept in the open under 100% outdoor light

**N:P:K ratios Type and fertiliser used N P K Urea (g) P+ (mL) Potash+(g) 1 1 0.98 0.98 0.98** 15 15 14.7 14.7 14.7 8 2 7.84 7.84 1.96 8 6 15.68 7.84 5.88 6 4 11.76 5.88 3.92 8 4 11.76 7.84 3.92

Sampling of microalgae cells was done daily and counting was carried out using a Neubauer

The growth rate, divisions per day, and generation time or doubling time was calculated

( ) ( ) Growth rate; K' = Ln N /N / t – t to 21 (8)


( ) -1 Generation time days ; Gen't = 1 Div.day (10)

**Table 1.** Type and fertiliser used in N:P:K ratio for mass culture of marine *Chlorella vulgaris*

Hemocytometer covered with glass slide under a compound microscope.

was prepared in triplicate. Source of nitrogen was obtained by using urea fertiliser.

*vulgaris***: Manipulation of N:P:K Ratio**

exposure.

following [49]

Where, K = specific growth rate, X1= the number of copepods at harvest time, t1 and X2= the number of copepods at time zero, t0

The doubling time was computed as:

Doubling time l K (ò og 2 ) = ( ) (7)

Where, т = doubling time, K = specific growth rate.

#### **Experiment 2: Effects of Photoperiod and Culture Size on** *Chlorella vulgaris* **Stock Growth**

Pure strains of *Chaetoceros* sp. and *C.vulgaris* were obtained from the microalgae maintenance laboratory at Institute of Tropical Aquaculture, Universiti Malaysia Terengganu, Malaysia, while the pure strain of *Nannochloropsis* sp. was obtained from the Fisheries Research Centre, Pulau Sayak, Kedah, and was maintained in autotrophic conditions in liquid and semisolid agar with Conway media [48]. This axenic culture was stored at 25±20 C for 3 days which served as an inoculum for further experiments.

Microalgae were grown in autotrophic conditions as a monospecific axenic culture in different volumes (250mL, 500mL and 2000mL) containing Conway media. 25mL of pure strain with the cell density of ~2 x 106 cells mL-1 were transferred to each Erlenmeyer culture flask and kept at complete illumination provided by luminescent tubes (1000 Lux). Carbon source was provided by bubbling sterile 2% (v/v) CO2 in air through the cultures. Culture flasks were maintained at a constant temperature (22˚C± 1˚C) with the pH range of 7-8 and salinity of ~35ppt in an air-conditioned laboratory over 2-3 weeks. Daily cell count was calculated using a haemocytometer. To determine the effect of different photoperiods, microalgae cultured in a 2 litre flask containing Conway media was treated at different photoperiods (light/dark) (24:0, 12:12 and 8:16) in replicates and cell count was achieved as mentioned above. Growth curve for each species of algae was constructed and One-way ANOVA with Dunnett's post-test was performed using Graph-Pad Prism.

Mean cell count and specific growth rate were calculated using the formula Χ= Σχ<sup>i</sup> <sup>n</sup> and SGR= *Ln W*<sup>2</sup> / *W*<sup>1</sup> *<sup>t</sup>*<sup>2</sup> - *<sup>t</sup>*1 respectively (where, X = mean cell count; χі = total number of cells; 'n'= number of cell counts; SGR = specific growth rate; W1= Initial cell density, cell-1; W2= Cell density at late exponential phase, cell-1; t1 = Time at initial cell density, cell-1; t2 = Time at late exponential phase, cell-1).

#### **Experiment 3: Low-Cost Commercial Fertiliser for Mass Culture of Marine** *Chlorella vulgaris***: Manipulation of N:P:K Ratio**

microalgae concentrate respectively. Individual copepods were counted daily under the Leica stereo microscope before being fed (1 drop). The maximum specific growth rate (K) was

Where, K = specific growth rate, X1= the number of copepods at harvest time, t1 and X2= the

**Experiment 2: Effects of Photoperiod and Culture Size on** *Chlorella vulgaris* **Stock Growth**

Pure strains of *Chaetoceros* sp. and *C.vulgaris* were obtained from the microalgae maintenance laboratory at Institute of Tropical Aquaculture, Universiti Malaysia Terengganu, Malaysia, while the pure strain of *Nannochloropsis* sp. was obtained from the Fisheries Research Centre, Pulau Sayak, Kedah, and was maintained in autotrophic conditions in liquid and semisolid

Microalgae were grown in autotrophic conditions as a monospecific axenic culture in different volumes (250mL, 500mL and 2000mL) containing Conway media. 25mL of pure strain with

kept at complete illumination provided by luminescent tubes (1000 Lux). Carbon source was provided by bubbling sterile 2% (v/v) CO2 in air through the cultures. Culture flasks were maintained at a constant temperature (22˚C± 1˚C) with the pH range of 7-8 and salinity of ~35ppt in an air-conditioned laboratory over 2-3 weeks. Daily cell count was calculated using a haemocytometer. To determine the effect of different photoperiods, microalgae cultured in a 2 litre flask containing Conway media was treated at different photoperiods (light/dark) (24:0, 12:12 and 8:16) in replicates and cell count was achieved as mentioned above. Growth curve for each species of algae was constructed and One-way ANOVA with Dunnett's post-test was

Mean cell count and specific growth rate were calculated using the formula Χ=

number of cell counts; SGR = specific growth rate; W1= Initial cell density, cell-1; W2= Cell density at late exponential phase, cell-1; t1 = Time at initial cell density, cell-1; t2 = Time at late exponential

*<sup>t</sup>*<sup>2</sup> - *<sup>t</sup>*1 respectively (where, X = mean cell count; χі = total number of cells; 'n'=

( ) K=ln X X /t -t 1 0 10 (6)

Doubling time l K (ò og 2 ) = ( ) (7)

cells mL-1 were transferred to each Erlenmeyer culture flask and

C for 3 days which served

Σχ<sup>i</sup> <sup>n</sup> and

calculated [47] as shown below:

110 Sustainable Aquaculture Techniques

number of copepods at time zero, t0

The doubling time was computed as:

as an inoculum for further experiments.

performed using Graph-Pad Prism.

*W*<sup>2</sup> / *W*<sup>1</sup>

SGR= *Ln*

phase, cell-1).

the cell density of ~2 x 106

Where, т = doubling time, K = specific growth rate.

agar with Conway media [48]. This axenic culture was stored at 25±20

An investigation was made to see the adaptability of the local marine *C. vulgaris* to the natural conditions in an aquaculture farm. This means that they need to adapt to different fertilisers other than Conway media, different salinity regimes and uncontrolled temperatures. Prepa‐ ration of NPK-based fertiliser was made by manipulating the ratio of nitrogen, phosphorus and potassium source as summarises in Table 1. Each of the different N:P:K ratio treatments was prepared in triplicate. Source of nitrogen was obtained by using urea fertiliser.

Culture containers were well-cleaned with bleach and rinsed thoroughly before filling up with 1L of the farm water (salinity of between 20-25ppt). The marine *C.vulgaris* concentrate was prepared and 1mL of it was inoculated into the container and 1mL of the fertilizer was added. The containers were vigorously aerated to provide required quantity of oxygen and to keep cells and media in suspension. The containers were kept in the open under 100% outdoor light exposure.


**Table 1.** Type and fertiliser used in N:P:K ratio for mass culture of marine *Chlorella vulgaris*

Sampling of microalgae cells was done daily and counting was carried out using a Neubauer Hemocytometer covered with glass slide under a compound microscope.

The growth rate, divisions per day, and generation time or doubling time was calculated following [49]

$$\text{Growth rate; K'=Ln \left(N\_t/N\_o\right)/\left(t\_2 - t\_1\right)}\tag{8}$$

$$\text{Divisions per day; Div.day}^{-1} = \text{K}^{\prime}/\text{Ln}2\tag{9}$$

$$\text{Generation time} \left( \text{days} \right); \text{ Gen}'t = 1/\text{Div}. \text{day}^{-1} \tag{10}$$

$$\text{Generation time (hours): Gen't=24} \left( \text{[} \text{[} \text{Div.day}^{-1} \text{]} \text{]} \right. \tag{11}$$

Where, t is the culture days, No and Nt is the number of copepods at the initial and final selected time interval. The doubling time (Dt) was calculated by dividing loge2 by the population

Although cyclopoid copepods are known to suspend in water column, *A. ramkhamhaengi* showed its adaptability to swim on the near bottom of its culture vessel. The culture for this experiment was started by introducing a gravid female on the experimental petri dish. The adult was removed after the eggs hatched and the nauplii were monitored until they reached copepodite-v stage and were ready to mate. Adult females and males from the culture were prepared for the experiment. A pair of male and female was put into each set of glass Petri dish filled with 15mL sea water. The use of a Petri dish instead of a beaker eased the daily observation of different stages of the copepod in the population. The cultures were maintained

was done twice per day under a dissecting microscope (Leica ZOOM 2000) before feeding to avoid the disturbance of the diet materials during individual or population counting. The culture medium was changed approximately 80% daily, and culture containers were subse‐ quently changed every 4days. Daily feeding was done in the morning and evening by dropping

gravid was based on the observation recorded twice per day (morning/evening). Once the females become gravid, the male broodstocks were removed, and the female were left alone inside the Petri dish in order to determine the number of eggs per female from its first copulation. Observation on the development time from nauplii to adult, maturation time and generation time of *A. ramkhamhaengi* were recorded coupling with the numbers of offspring

**Experiment 1: Production of** *Chlorella vulgaris* **Concentrate Isolated from Bidong Island**

The ultra-structure of the *C.vulgaris* isolated and cultivated in this study is shown in Figure 1. The scanning electron micrographs displayed the characteristic features of green single cells with spherical shape and possession of rigid cell wall. There are some differences found in the present specimen if compared to some other established species. The outer shell is rough if compared to the latest SEM of *C.sorokiana* [51].The feature is almost the same as found in SEM of *C.vulgaris* [52]. In terms of size, the specimen was found to be in between the size of marine

*C.vulgaris* (2.1μm) and estuarine *C.vulgaris* (2.3μm) from Korean waters [53].

cells/ml *C.vulgaris* into the culture. The time taken for the females to become

<sup>K</sup> (13)

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113

C without additional oxygen supply or aeration. Observation

<sup>e</sup> log 2 Dt=

growth rate (K) of all stages of *A. ramkhamhaengi* in both diets given:

at room temperature of 25-27o

produced and percentage of hatching.

**3. Result and discussions**

**and Assessment as Copepod Diet**

1mL of 1 x 106

Where, No and Nt = final and initial populations at time t1 and time t2, respectively.

Since sample was collected daily, therefore, t2 – t1 = 1.

#### **Experiment 4: Egg Production, Growth and Development of** *Apocyclops ramkhamhaengi* **Fed on Marine** *Chlorella vulgaris*

Detailed observation on the reproduction performance of a zooplankton depending solely on a *C.vulgaris* diet was planned to prove the important role played by this local microalgae in live-feed production. Samples of copepods were collected from Sungai Semerak (N 05° 51.737, E 102° 30.809'), Tok Bali, Kelantan using a zooplankton net. This area receives sea water from the South China Sea, which is near to the Thailand coast where the copepod species was first identified and reported. Live copepods were maintained and adapted to the laboratory environment. Sand-filtered sea water from the Marine Hatchery, Universiti Malaysia Tereng‐ ganu was diluted with deionised water to be at salinity of 25ppt and was further filtered through a GFC membrane filter and then autoclaved at 121°C for 15 minutes [11]. Salinity was measured using a portable hand-refractometer (ATAGO, Japan). Microalgae diet for the copepod was prepared from the marine algae *C.vulgaris* stocked at the Marine Hatchery. The microalgae were cultured in 29-31ppt Conway medium with 24h-light, room temperature of 25-27o C and continuous aeration for 7days. The cell concentration in each 500ml conical flask was determined by using Neuber haemocytometer (0.25mm2 x 0.1 mm) under a compound microscope. The algal production was done weekly and supplied to *A. ramkhamhaengi* culture.

The investigation on the reproduction performance started with fifteen gravid females of *A. ramkhamhaengi* placed into two sets of triplicate of 250mL beakers. The diet constituted,1mL of Baker's yeast (0.02g/L) and 1mL of *C.vulgaris* at density 1x106 cells/mL which were intro‐ duced into both sets of the beakers and covered with parafilm layer to avoid contamination. Three subsamples (approximately 1mL) from each beaker of the cultures were observed daily. The number of the copepods at all stages, including nauplii, copepodite, adult and gravid female, were counted under a dissecting microscope (Leica ZOOM 2000) and then returned to the culture. Changing of approximately 80% of the culture medium was done every alternate day by passing the copepods culture through 100 and 40 microns nylon net which would retain all stages of copepods (the smallest size of 60 microns) but remove most of the waste.

The population growth of *A. ramkhamhaengi* was studied for 30 days. The specific growth rates (K) of all stages of the copepods in both diets given were calculated by using the formula [50]:

$$\mathbf{K} = \frac{\ln \mathbf{N} \mathbf{t} - \ln \mathbf{N} \mathbf{o}}{\mathbf{t}} \tag{12}$$

Where, t is the culture days, No and Nt is the number of copepods at the initial and final selected time interval. The doubling time (Dt) was calculated by dividing loge2 by the population growth rate (K) of all stages of *A. ramkhamhaengi* in both diets given:

$$\text{Dt} = \frac{\log\_e 2}{\text{K}} \tag{13}$$

Although cyclopoid copepods are known to suspend in water column, *A. ramkhamhaengi* showed its adaptability to swim on the near bottom of its culture vessel. The culture for this experiment was started by introducing a gravid female on the experimental petri dish. The adult was removed after the eggs hatched and the nauplii were monitored until they reached copepodite-v stage and were ready to mate. Adult females and males from the culture were prepared for the experiment. A pair of male and female was put into each set of glass Petri dish filled with 15mL sea water. The use of a Petri dish instead of a beaker eased the daily observation of different stages of the copepod in the population. The cultures were maintained at room temperature of 25-27o C without additional oxygen supply or aeration. Observation was done twice per day under a dissecting microscope (Leica ZOOM 2000) before feeding to avoid the disturbance of the diet materials during individual or population counting. The culture medium was changed approximately 80% daily, and culture containers were subse‐ quently changed every 4days. Daily feeding was done in the morning and evening by dropping 1mL of 1 x 106 cells/ml *C.vulgaris* into the culture. The time taken for the females to become gravid was based on the observation recorded twice per day (morning/evening). Once the females become gravid, the male broodstocks were removed, and the female were left alone inside the Petri dish in order to determine the number of eggs per female from its first copulation. Observation on the development time from nauplii to adult, maturation time and generation time of *A. ramkhamhaengi* were recorded coupling with the numbers of offspring produced and percentage of hatching.

#### **3. Result and discussions**

( ) ( ) -1 Generation time hours ; Gen't = 24 1 Div.day (11)

Where, No and Nt = final and initial populations at time t1 and time t2, respectively.

**Experiment 4: Egg Production, Growth and Development of** *Apocyclops ramkhamhaengi*

Detailed observation on the reproduction performance of a zooplankton depending solely on a *C.vulgaris* diet was planned to prove the important role played by this local microalgae in live-feed production. Samples of copepods were collected from Sungai Semerak (N 05° 51.737, E 102° 30.809'), Tok Bali, Kelantan using a zooplankton net. This area receives sea water from the South China Sea, which is near to the Thailand coast where the copepod species was first identified and reported. Live copepods were maintained and adapted to the laboratory environment. Sand-filtered sea water from the Marine Hatchery, Universiti Malaysia Tereng‐ ganu was diluted with deionised water to be at salinity of 25ppt and was further filtered through a GFC membrane filter and then autoclaved at 121°C for 15 minutes [11]. Salinity was measured using a portable hand-refractometer (ATAGO, Japan). Microalgae diet for the copepod was prepared from the marine algae *C.vulgaris* stocked at the Marine Hatchery. The microalgae were cultured in 29-31ppt Conway medium with 24h-light, room temperature of

C and continuous aeration for 7days. The cell concentration in each 500ml conical flask

microscope. The algal production was done weekly and supplied to *A. ramkhamhaengi* culture.

The investigation on the reproduction performance started with fifteen gravid females of *A. ramkhamhaengi* placed into two sets of triplicate of 250mL beakers. The diet constituted,1mL

duced into both sets of the beakers and covered with parafilm layer to avoid contamination. Three subsamples (approximately 1mL) from each beaker of the cultures were observed daily. The number of the copepods at all stages, including nauplii, copepodite, adult and gravid female, were counted under a dissecting microscope (Leica ZOOM 2000) and then returned to the culture. Changing of approximately 80% of the culture medium was done every alternate day by passing the copepods culture through 100 and 40 microns nylon net which would retain

all stages of copepods (the smallest size of 60 microns) but remove most of the waste.

ln Nt - K= ln No

The population growth of *A. ramkhamhaengi* was studied for 30 days. The specific growth rates (K) of all stages of the copepods in both diets given were calculated by using the formula [50]:

x 0.1 mm) under a compound

cells/mL which were intro‐

<sup>t</sup> (12)

Since sample was collected daily, therefore, t2 – t1 = 1.

was determined by using Neuber haemocytometer (0.25mm2

of Baker's yeast (0.02g/L) and 1mL of *C.vulgaris* at density 1x106

**Fed on Marine** *Chlorella vulgaris*

112 Sustainable Aquaculture Techniques

25-27o

#### **Experiment 1: Production of** *Chlorella vulgaris* **Concentrate Isolated from Bidong Island and Assessment as Copepod Diet**

The ultra-structure of the *C.vulgaris* isolated and cultivated in this study is shown in Figure 1. The scanning electron micrographs displayed the characteristic features of green single cells with spherical shape and possession of rigid cell wall. There are some differences found in the present specimen if compared to some other established species. The outer shell is rough if compared to the latest SEM of *C.sorokiana* [51].The feature is almost the same as found in SEM of *C.vulgaris* [52]. In terms of size, the specimen was found to be in between the size of marine *C.vulgaris* (2.1μm) and estuarine *C.vulgaris* (2.3μm) from Korean waters [53].

**iv.** Death phase (days 22-26).

*C.vulgaris* concentrate and live culture.

0.00

60

80

100

Cell Viability (%)

120

50.00

100.00

Cellular Density (x106

cells ml-1)

2

3

150.00

200.00

250.00

227.22±0.82 x106

*C.vulgaris* paste was successfully concentrated from the pure culture isolated from Bidong

still be inoculated after refrigeration for a duration of six weeks and exhibited similar growth characteristics as the live culture (Figure 2). The cells had very high viability even after 6 weeks of storage in chilling conditions (4ºC) as shown in Figure 3. It is interesting to note that the paste had recorded the highest cell viabilities of 99.51±0.57% and continued to display slow and steady decrement of cell viabilities to 83.28±0.58% on the sixth week of storage. Micro‐ scopic examination also indicated that the cells were in single forms without any aggregation occurring and can be readily dispersed in seawater medium as single suspension of cells upon inoculation (Figure 1A). The harvesting efficiency of the ultrafiltration technique using membrane filter had recorded a very high percentage recovery of 93.14±1.35% showing the effectiveness of this technique for harvesting and concentrating the microalgae biomass.

Copepod species, *Apocyclops* sp., showed a higher population density when fed with *C.vulga‐ ris* paste (60±4.36 individual mL-1) than with the live culture (14.33±0.58 individual mL-1) (Figure 4). In addition, the copepod populations fed with this concentrate exhibited a higher instantaneous growth rate, K=0.455±0.008 day-1 and faster doubling time (0.662±0.012 hour) than live culture which recorded an instantaneous growth rate of 0.296±0.005 day-1 and doubling time of 1.108±0.016 hour. Results from one-way ANOVA test has shown that there is a significant difference (P<0.005) between the copepod population densities fed with the

0 5 10 15 20 25 30

Time (days)

oratory conditions with Conway medium. Data are mean value and standard deviation of 3 repetitions.

**Figure 2.** Cellular densities of live *C.vulgaris* (30L) and concentrate/paste (after reinoculation in 5L) cultured under lab‐

y = -3.3394x + 104.36

01234567

Weeks

cells mL-1. The present result also showed that this *C.vulgaris* concentrate can

cells mL-1 -

115

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Live

Concentrate

Island. This concentrate contains cell density of approximately 58.46±2.44 x109

**Figure 1.** The scanning electron micrographs of *C.vulgaris* under different views and various magnifications. A, Cell aggregation. B, *C.vulgaris* cells under different magnification C. Cell divison in *C.vulgaris*. D, Single cell and cell wall structures.

The cell has an average cell biovolume of 5.26±0.87 μm3 . The cell densities changed following the culture period in both culture of concentrates (paste) and live condition (although they both started at the same density). Nonetheless, they followed more or less the same growth patten. The variation in cell densities during the experimental period is shown in Figure 2. Cell density of *C.vulgaris* increased rapidly to 227.22±0.87 x106 cells mL-1 prior to stationary phase. After that, the cell densities maintained at this point for ten days before decreasing significantly thereafter (Figure 2). The average specific growth rate (SGR, μ) achieved during the exponen‐ tial phase was 0.660±0.001 day-1 with the doubling time (T) of 0.580±0.004 hour which then decreased drastically to 0.126±0.001 day-1 during the retardation phase with the doubling time of 2.420±0.019 hour before the death phase. Based on cell density and growth rate observed, the following growth phase is described:


#### **iv.** Death phase (days 22-26).

60

80

100

Cell Viability (%)

120

2

**C D**

The cell has an average cell biovolume of 5.26±0.87 μm3

density of *C.vulgaris* increased rapidly to 227.22±0.87 x106

**ii.** Declining of relative growth rate phase (days 6-12),

the following growth phase is described:

**iii.** Stationary phase (days 12-22),

**i.** Exponential (log) phase (days 0-6),

**Figure 1.** The scanning electron micrographs of *C.vulgaris* under different views and various magnifications. A, Cell aggregation. B, *C.vulgaris* cells under different magnification C. Cell divison in *C.vulgaris*. D, Single cell and cell wall

the culture period in both culture of concentrates (paste) and live condition (although they both started at the same density). Nonetheless, they followed more or less the same growth patten. The variation in cell densities during the experimental period is shown in Figure 2. Cell

After that, the cell densities maintained at this point for ten days before decreasing significantly thereafter (Figure 2). The average specific growth rate (SGR, μ) achieved during the exponen‐ tial phase was 0.660±0.001 day-1 with the doubling time (T) of 0.580±0.004 hour which then decreased drastically to 0.126±0.001 day-1 during the retardation phase with the doubling time of 2.420±0.019 hour before the death phase. Based on cell density and growth rate observed,

. The cell densities changed following

cells mL-1 prior to stationary phase.

**A B**

Kingdom PLANTAE Phylum CHLOROPHYTA Class CHLOROPHYCEAE Order CHLORELLALES Family CHLORELLACEAE Genus *CHLORELLA*

114 Sustainable Aquaculture Techniques

structures.

*C.vulgaris* paste was successfully concentrated from the pure culture isolated from Bidong Island. This concentrate contains cell density of approximately 58.46±2.44 x109 cells mL-1 - 227.22±0.82 x106 cells mL-1. The present result also showed that this *C.vulgaris* concentrate can still be inoculated after refrigeration for a duration of six weeks and exhibited similar growth characteristics as the live culture (Figure 2). The cells had very high viability even after 6 weeks of storage in chilling conditions (4ºC) as shown in Figure 3. It is interesting to note that the paste had recorded the highest cell viabilities of 99.51±0.57% and continued to display slow and steady decrement of cell viabilities to 83.28±0.58% on the sixth week of storage. Micro‐ scopic examination also indicated that the cells were in single forms without any aggregation occurring and can be readily dispersed in seawater medium as single suspension of cells upon inoculation (Figure 1A). The harvesting efficiency of the ultrafiltration technique using membrane filter had recorded a very high percentage recovery of 93.14±1.35% showing the effectiveness of this technique for harvesting and concentrating the microalgae biomass.

Copepod species, *Apocyclops* sp., showed a higher population density when fed with *C.vulga‐ ris* paste (60±4.36 individual mL-1) than with the live culture (14.33±0.58 individual mL-1) (Figure 4). In addition, the copepod populations fed with this concentrate exhibited a higher instantaneous growth rate, K=0.455±0.008 day-1 and faster doubling time (0.662±0.012 hour) than live culture which recorded an instantaneous growth rate of 0.296±0.005 day-1 and doubling time of 1.108±0.016 hour. Results from one-way ANOVA test has shown that there is a significant difference (P<0.005) between the copepod population densities fed with the *C.vulgaris* concentrate and live culture.

3 **Figure 2.** Cellular densities of live *C.vulgaris* (30L) and concentrate/paste (after reinoculation in 5L) cultured under lab‐ oratory conditions with Conway medium. Data are mean value and standard deviation of 3 repetitions.

y = -3.3394x + 104.36

01234567

Weeks

4

6

Density

0.00

50.00

100.00

Cellular Density (x106

cells ml-1)

2

150.00

200.00

250.00

0 5 10 15 20 25 30

Live

Concentrate

33.49 μm3

is no contamination in the culture [30].

microalgae concentrates on site.

) [54]. Small size species of microalgae grow faster with a rapid growth rate. This is

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117

due to the reason that the greater surface-to-volume ratio of smaller size cells facilitates assimilation of nutrients at a relatively faster rate. In addition, the smaller size cells may achieve high density because they occupy less space. Apart from that, it was also cultured with optimal values for all environmental factors in the laboratory, thus promoting favourable environ‐ mental conditions for the cells to grow to extremely high density. In this high-density culture, the possibilities of contamination were excluded. The sudden collapse in the growth rate after day six could be mainly the result of the depletion of the nutrient in the culture. Growth rate declines and growth of microalgae ceases when the nutrient in shortest supply relative to the metabolic needs of algal population [27,55]. The populations of *C.vulgaris* cells then entered the stationary phase of the growth cycle and collapsed after day twenty two. The long stationary phase of this culture might indicate that contamination was absent during the culture period. It has been reported that this stationary phase can last for several weeks if there

The ultrafiltration technique which was used to concentrate the *C.vulgaris* cells in this study can be applied to concentrate a range of other microalgae species used as aquaculture feeds. Concentrating and storing the microalgae concentrate in moist form preserves its high nutritional value through maintaining excellent cell viability [33, 35]. The cells were readily re-suspended upon dilution in sea water with high cell viability which was proven by their ability to be inoculated even after storage for a duration of 6 weeks. The efficiency of ultrafil‐ tration through this study was ≥90% which is very comparable to the reported efficiency of ≥80% for flocculation technique by Knuckey *et al*. [34]. There has been no comparative assessment of concentrates prepared by ultrafiltration with those prepared by centrifugation. However, from a practical and theoretical point of view, it is proven that the centrifugation method possesses some disadvantages due to its exertion of shear gravitational forces rupturing the microalgae cell structure during harvesting procedure. This reduces their nutritional values due to leaking of nutritional contents. On the other hand, microalgae concentrates prepared by ultrafiltration are not subjected to the same gravitational forces during harvesting. As reported earlier [38], the major production cost of centrifuged concen‐ trates may exceed US\$10,000 (RM32,620) which is unaffordable for small-scale hatcheries and is likely to be limited to larger hatcheries with specialised equipments or facilities specifically set up to produce microalgae concentrates to hatcheries. Advantages of the ultrafiltration technique used in this study is that it is a relatively simple, inexpensive and volume-inde‐ pendent process which can be readily adopted by small-scale hatcheries to prepare their own

The use of *C.vulgaris* concentrate as diet for cyclopoid copepods increases population density, instantaneous growth rate as well as doubling time and it was proven as a better diet than the *C.vulgaris* live cultures. This might be possibly due to the significantly higher cellular density of the microalgae concentrates. The rates of ingestion and egg production in copepods are dependent on the quantity of the provided microalgae [56, 57] implying that quantity of food is the most important factor regulating the productivity of copepod culture. Other studies have also demonstrated that the rate of egg production of calanoid copepod, *Acartia tonsa,* increases

Time (days)

**Figure 3.** Variations in the cell viabilities of *C.vulgaris* microalgae concentrate over 6 weeks of storage in chilling condi‐ tion at 4º C. Data are mean value and standard deviation of 10 repetitions.

Data are mean value and standard deviation of 3 repetitions.

**Figure 4.** Population densities of *Apocyclop*s sp. fed with live culture and microalgae concentrate of *C.vulgaris*.

3500000 4000000 4500000 Cell growth in different NPK ratio *C.vulgaris* isolated from Bidong Island had exhibited an extremely rapid growth rate. This might be attributed to its relatively small cell volume with an average of 5.26±0.87 μm3 . This is indeed much smaller than the cell sizes recorded for some other species; *Chaetoceros calcitrans* (8μm diameter, volume 276.95 μm3 ) and *Isochrysis galbana* (4μm diameter, volume

> 15:15:15 8:08:02 16:04:06 12:06:04 12:08:04

0 2 4 6 8 10 12

Days

33.49 μm3 ) [54]. Small size species of microalgae grow faster with a rapid growth rate. This is due to the reason that the greater surface-to-volume ratio of smaller size cells facilitates assimilation of nutrients at a relatively faster rate. In addition, the smaller size cells may achieve high density because they occupy less space. Apart from that, it was also cultured with optimal values for all environmental factors in the laboratory, thus promoting favourable environ‐ mental conditions for the cells to grow to extremely high density. In this high-density culture, the possibilities of contamination were excluded. The sudden collapse in the growth rate after day six could be mainly the result of the depletion of the nutrient in the culture. Growth rate declines and growth of microalgae ceases when the nutrient in shortest supply relative to the metabolic needs of algal population [27,55]. The populations of *C.vulgaris* cells then entered the stationary phase of the growth cycle and collapsed after day twenty two. The long stationary phase of this culture might indicate that contamination was absent during the culture period. It has been reported that this stationary phase can last for several weeks if there is no contamination in the culture [30].

0.00

60

0.00

Data are mean value and standard deviation of 3 repetitions.

*calcitrans* (8μm diameter, volume 276.95 μm3

10.00

20.00

30.00

40.00

Population Density (ind/ml)

50.00

60.00

70.00

tion at 4º C. Data are mean value and standard deviation of 10 repetitions.

80

100

Cell Viability (%)

120

116 Sustainable Aquaculture Techniques

0 5 10 15 20 25 30

Live

Concentrate

Concentrate Live Culture

) and *Isochrysis galbana* (4μm diameter, volume

15:15:15 8:08:02 16:04:06 12:06:04 12:08:04

. This

Time (days)

y = -3.3394x + 104.36

01234567

Weeks

**Figure 3.** Variations in the cell viabilities of *C.vulgaris* microalgae concentrate over 6 weeks of storage in chilling condi‐

0 3 6 9 12 15 18

Day

**Figure 4.** Population densities of *Apocyclop*s sp. fed with live culture and microalgae concentrate of *C.vulgaris*.

0 2 4 6 8 10 12

Cell growth in different NPK ratio

*C.vulgaris* isolated from Bidong Island had exhibited an extremely rapid growth rate. This might be attributed to its relatively small cell volume with an average of 5.26±0.87 μm3

is indeed much smaller than the cell sizes recorded for some other species; *Chaetoceros*

Days

50.00

100.00

Cellular Density (x106

cells ml-1)

2

3

4

6

Density

150.00

200.00

250.00

The ultrafiltration technique which was used to concentrate the *C.vulgaris* cells in this study can be applied to concentrate a range of other microalgae species used as aquaculture feeds. Concentrating and storing the microalgae concentrate in moist form preserves its high nutritional value through maintaining excellent cell viability [33, 35]. The cells were readily re-suspended upon dilution in sea water with high cell viability which was proven by their ability to be inoculated even after storage for a duration of 6 weeks. The efficiency of ultrafil‐ tration through this study was ≥90% which is very comparable to the reported efficiency of ≥80% for flocculation technique by Knuckey *et al*. [34]. There has been no comparative assessment of concentrates prepared by ultrafiltration with those prepared by centrifugation. However, from a practical and theoretical point of view, it is proven that the centrifugation method possesses some disadvantages due to its exertion of shear gravitational forces rupturing the microalgae cell structure during harvesting procedure. This reduces their nutritional values due to leaking of nutritional contents. On the other hand, microalgae concentrates prepared by ultrafiltration are not subjected to the same gravitational forces during harvesting. As reported earlier [38], the major production cost of centrifuged concen‐ trates may exceed US\$10,000 (RM32,620) which is unaffordable for small-scale hatcheries and is likely to be limited to larger hatcheries with specialised equipments or facilities specifically set up to produce microalgae concentrates to hatcheries. Advantages of the ultrafiltration technique used in this study is that it is a relatively simple, inexpensive and volume-inde‐ pendent process which can be readily adopted by small-scale hatcheries to prepare their own microalgae concentrates on site.

The use of *C.vulgaris* concentrate as diet for cyclopoid copepods increases population density, instantaneous growth rate as well as doubling time and it was proven as a better diet than the *C.vulgaris* live cultures. This might be possibly due to the significantly higher cellular density of the microalgae concentrates. The rates of ingestion and egg production in copepods are dependent on the quantity of the provided microalgae [56, 57] implying that quantity of food is the most important factor regulating the productivity of copepod culture. Other studies have also demonstrated that the rate of egg production of calanoid copepod, *Acartia tonsa,* increases with increasing food concentrations [58, 59]. Essential substances such as cholesterol, HUFA and PUFA are present or exist abundantly in microalgae, and, copepod production is positively related to the lipid levels or DHA: EPA ratio in the diet [60]. Thus, microalgae concentrate could be useful as a replacement for live or fresh microalgae. This is extremely important as a stable and continuous supply of live feed for aquaculture hatcheries must always be provided.

large volume culture needed higher light intensity to allow light penetration while the smaller

**Cell density x 10**

**Cell density x 10**

**Cell density x 10**

**1**

**4**

Fig.F

**7**

**10**

**\*\***

**13**

24:0 12:12 8:16

**16**

**19**

**\*\*\***

**22**

**25**

**6ml-1**

**6ml-1**

**1**

**0**

**5**

**10**

**15**

**2**

Fig. D

Fig. B

**3**

**4**

**5**

**6**

**7**

**1 4 7 10 13 16 19 22 25**

24:0 12:12 8:16

**\*\***

**8**

250ml 500ml 2000ml **\*\*\* \*\*\***

**9**

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119

**10**

**11**

**12**

**13**

**14**

**6ml-1**

volumes were less affected by the light penetration.

**Cell density x 10**

**Cell density x 10**

**6ml-1**

**1**

**1**

**0**

**Cell density x 10**

tively.

**1**

**4**

**7**

**10**

**13**

24:0 12:12 8:16 **\*\*\* \*\*\***

**16**

**19**

**22**

**25**

**Figure 5.** Influence of different photoperiods and culture flask volumes on the cell density of *Nannochloropsis* sp. (Fig A & D), *Chaetoceros* sp. (Fig B & E) and *C.vulgaris* (Fig C & F) respectively. X-axis shows the days of culture. Data repre‐ sented as 250ml, 500ml and 2000ml are culture flask volumes while 24:0, 12:12 and 8:16 are photoperiods (Light : Dark phase). [\*\*\*] and [\*\*] are significantly different at P < 0.001 and P < 0.05 level in the culture conditions respec‐

**6ml-1**

**50**

**100**

**150**

**2**

**3**

Fig. E

**4**

**5**

**6**

**7**

**8**

**9**

250ml 500ml 2000ml

**10**

**11**

**12**

**13**

**14**

**15**

**16**

**17**

**0**

**50**

**100**

**150**

**2**

Fig.C

Fig. A

**3**

**4**

**5**

**6**

**7**

**8**

**9**

250ml 500ml 2000ml

**10**

**11**

**12**

**13**

**14**

**15**

**16**

**6ml-1**

#### **Experiment 2: Effects of Photoperiod and Culture Size on** *C.vulgaris* **Stock Growth**

It is very important for hatcheries to be able to maintain the stock for microalgae for their sustainable live-feeds supply. Batch cultures need to be maintained under optimal environ‐ mental conditions and in a suitable culture vessel which will not affect the cell density and quality. Comparison on the effect of photoperiod and culture sizes between *C.vulgaris* and other microalgae was made to investigate the adaptability of the species to simple stock handling in the laboratory or hatchery conditions. No significant difference in the cell density was noted in *Nannochloropsis* sp. (Figure 5A) and *C.vulgaris* (Figure 5C) cultures grown in different volume flasks while *Chaetoceros* sp. Figure 5B showed significant variation in celldensity level at similar culture conditions (P < 0.001). However, stationary phases of all cultured species were achieved earlier in 250mL flask compared to the cultures in 500mL and 2L flasks. All cultures showed greater response towards daylight variations whereby higher cell density was noted in culture flasks exposed to continued illumination (24:0 L/D), and it was followed by 12:12 L/D and 6:18 L/D condition. *Nannochloropsis* sp. (Figure 5D) responded less towards the treatment compared to the other 2 species (Figure 5E & F) which clearly showed a specific response towards culture conditions.

It is well-documented that, in natural conditions, microalgae growth is not curtailed by ambient environmental conditions because the growth rate is just enough for species survival. However, their multiplication rate is highly influenced by various environmental parameters. In an *In vitro* setup, the proper maintenance of optimum culture condition triggers the metabolic pathway of target species in a unidirectional fashion to achieve high cell density. In this study, a higher cell density of microalgae in low volume flask culture together with early stationary phase was observed could be used to obtain continuous harvest of selected micro‐ algae.

Highest cell density and specific growth rate were recorded in selected species cultured in 250mL culture flask compared to the cultures in 500mL and 2000mL flasks (Table 2). The highest cell density was achieved during the end of the log phase. Cell density of early stationary phase, which is the end of the log phase for *Nannochloropsis* sp*., Chaetoceros* sp. and *C.vulgaris* was achieved on the 10th day of culture in 250mL. After the 10th day, density decreased and the lowest level was different for different species and different culture volumes. Similar results were also noted for the specific growth rate values. Significant variation in cell density and specific growth rate was observed between the cultures in different sizes of culture flask (P < 0.05 or P < 0.001). This observation might probably be due to the lightpenetration efficiency in the culture flask. Similar observation was noted for the culture of *Nannochloropsis* sp. in 2000mL flasks which produced greater cell density compared to the culture in 20L carboys [61]. The effect of light saturation could decrease in the denser culture and the average irradiance in the culture reduced due to absorption from other cells [62]. The large volume culture needed higher light intensity to allow light penetration while the smaller volumes were less affected by the light penetration.

with increasing food concentrations [58, 59]. Essential substances such as cholesterol, HUFA and PUFA are present or exist abundantly in microalgae, and, copepod production is positively related to the lipid levels or DHA: EPA ratio in the diet [60]. Thus, microalgae concentrate could be useful as a replacement for live or fresh microalgae. This is extremely important as a stable and continuous supply of live feed for aquaculture hatcheries must always be provided.

It is very important for hatcheries to be able to maintain the stock for microalgae for their sustainable live-feeds supply. Batch cultures need to be maintained under optimal environ‐ mental conditions and in a suitable culture vessel which will not affect the cell density and quality. Comparison on the effect of photoperiod and culture sizes between *C.vulgaris* and other microalgae was made to investigate the adaptability of the species to simple stock handling in the laboratory or hatchery conditions. No significant difference in the cell density was noted in *Nannochloropsis* sp. (Figure 5A) and *C.vulgaris* (Figure 5C) cultures grown in different volume flasks while *Chaetoceros* sp. Figure 5B showed significant variation in celldensity level at similar culture conditions (P < 0.001). However, stationary phases of all cultured species were achieved earlier in 250mL flask compared to the cultures in 500mL and 2L flasks. All cultures showed greater response towards daylight variations whereby higher cell density was noted in culture flasks exposed to continued illumination (24:0 L/D), and it was followed by 12:12 L/D and 6:18 L/D condition. *Nannochloropsis* sp. (Figure 5D) responded less towards the treatment compared to the other 2 species (Figure 5E & F) which clearly

It is well-documented that, in natural conditions, microalgae growth is not curtailed by ambient environmental conditions because the growth rate is just enough for species survival. However, their multiplication rate is highly influenced by various environmental parameters. In an *In vitro* setup, the proper maintenance of optimum culture condition triggers the metabolic pathway of target species in a unidirectional fashion to achieve high cell density. In this study, a higher cell density of microalgae in low volume flask culture together with early stationary phase was observed could be used to obtain continuous harvest of selected micro‐

Highest cell density and specific growth rate were recorded in selected species cultured in 250mL culture flask compared to the cultures in 500mL and 2000mL flasks (Table 2). The highest cell density was achieved during the end of the log phase. Cell density of early stationary phase, which is the end of the log phase for *Nannochloropsis* sp*., Chaetoceros* sp. and *C.vulgaris* was achieved on the 10th day of culture in 250mL. After the 10th day, density decreased and the lowest level was different for different species and different culture volumes. Similar results were also noted for the specific growth rate values. Significant variation in cell density and specific growth rate was observed between the cultures in different sizes of culture flask (P < 0.05 or P < 0.001). This observation might probably be due to the lightpenetration efficiency in the culture flask. Similar observation was noted for the culture of *Nannochloropsis* sp. in 2000mL flasks which produced greater cell density compared to the culture in 20L carboys [61]. The effect of light saturation could decrease in the denser culture and the average irradiance in the culture reduced due to absorption from other cells [62]. The

**Experiment 2: Effects of Photoperiod and Culture Size on** *C.vulgaris* **Stock Growth**

showed a specific response towards culture conditions.

algae.

118 Sustainable Aquaculture Techniques

**Figure 5.** Influence of different photoperiods and culture flask volumes on the cell density of *Nannochloropsis* sp. (Fig A & D), *Chaetoceros* sp. (Fig B & E) and *C.vulgaris* (Fig C & F) respectively. X-axis shows the days of culture. Data repre‐ sented as 250ml, 500ml and 2000ml are culture flask volumes while 24:0, 12:12 and 8:16 are photoperiods (Light : Dark phase). [\*\*\*] and [\*\*] are significantly different at P < 0.001 and P < 0.05 level in the culture conditions respec‐ tively.


and dark phase [63]. During this process, the fast reduction of e-acceptors, Qa and Qb, associated to photosystem II (PSII) followed by their oxidation in the dark period will take place that will ultimately maximise the proton-accepting capacity of PSII during sudden

*C.vulgaris* proved its adaptability to different culture volumes and lighting periods with good growth performance comparable to *Nannochloropsis* sp. and better than *Chaetoceros* sp. The cells responded positively towards continuous illumination of light by producing higher cell density and specific growth rate in the culture media. It was also noted that the culture in the low-volume flask produced an early stationary phase due to high penetration of light and continuous sharing of available nutrients in the media for faster growth and survival. On the other hand, *C.vulgaris* consistently grew at significant cell densities even in larger volume containers and shorter period of illumination than dark condition (comparable to *Nannochlor‐ opsis* sp. and better than *Chaetoceros* sp.). In another study to analyse the effect of photoperiod to the cellular essential fatty acid in these species, the photoperiod of 12:12h L/D regime is recommended for the fast and economical technique for batch culture production [65]. A better ratio of essential fatty acid accumulated in *C.vulgaris* exposed in the 12:12h if compared to 24:0

**Experiment 3: Low-cost Commercial Fertiliser for Mass Culture of Marine** *Chlorella*

*C.vulgaris* showed its adaptability to grow well when fertilised with a low-cost commercial N:P:K plant fertiliser (Figure 6). Duration of the log phase for *C.vulgaris* varied among treatments. The 12:6:4 and 12:8:4 ratios had a result of 3 days while the longest period was in the 15:15:15 treatment. Combined applications of urea, P+ and K+ (N:P:K; 12:6:4) produced the

0 2 4 6 8 10 12

Cell growth in different NPK ratio

Days

**Figure 6.** Density (cells mL-1) of *C.vulgaris* cultured with commercial fertiliser of different N:P:K ratios

ratios of N:P:K, 12:8:4, 8:8:2 and 16:4:6 resulted in decrease of cell density, 3.3×106

0 3 6 9 12 15 18

Day

cells mL-1) during log period at 5 days while N:P:K; 15:15:15

cells mL-1) at 7 days of log period. Different

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Concentrate Live Culture

, 3.0×106

15:15:15 8:08:02 16:04:06 12:06:04 12:08:04 and

irradiant of light [64].

or 8:16 L/D photoperiod.

4

highest cell number (4.0×106

6

Density

2.7×106

*vulgaris***: Manipulation of N:P:K Ratio**

Population Density (ind/ml)

cells mL-1, respectively.

(control) produced highest cell number (4.16×106

0.00 10.00 20.00 30.00 40.00 50.00 60.00 70.00

*Note*: Data represented in Mean ± SD. [\*] and [\*\*] indicates significant difference at P < 0.05 and P < 0.001(respectively) level between different superscripts depicted for each species.

**Table 2.** Cell density and specific growth rate of selected microalgae cultured at different flask volumes.


*Note*: Data represented in Mean ± SD. [\*] and [\*\*] indicates significant difference at P < 0.05 and P < 0.001 (respective‐ ly) level between different superscripts depicted for each species.

**Table 3.** Cell density and specific growth rate of selected microalgae cultured at different photo periods.

Highest cell density and specific growth rate were recorded in all cultured species that were exposed to continued illumination (24:0. L/D) followed by 12:12 and 6:18 L/D respectively. Early stationary phases differed for *Nannochloropsis* sp. (day 13)*, Chaetoceros* sp. (day 12) and *C.vulgaris*. (day 14) respectively while the corresponding specific growth rate was also highest under 24hours illumination. Significant variation in both growth parameters was observed between the cultures exposed to different photoperiods (P < 0.05 or P < 0.001) (Table 3). Photosynthetic efficiency of microalgae can be enhanced by sudden alteration between light and dark phase [63]. During this process, the fast reduction of e-acceptors, Qa and Qb, associated to photosystem II (PSII) followed by their oxidation in the dark period will take place that will ultimately maximise the proton-accepting capacity of PSII during sudden irradiant of light [64].

**Microalgae Flask volume**

*Nannochloropsis* sp*.*

120 Sustainable Aquaculture Techniques

*Chaetoceros* sp.

*Nannochloropsis* sp*.*

*Chaetoceros* sp.

*C.vulgaris*

*C.vulgaris*

**(mL)**

level between different superscripts depicted for each species.

**Microalgae Photo period (Light :**

ly) level between different superscripts depicted for each species.

**Dark phase) in hours**

**Early stationary phase**

**Cell density**

250 Day 10 112.5±2.36a 0.52±0.01a 500 Day 11 110.17±1.77a 0.46±0.04b 2000 Day 13 92.2± 0.87a 0.34±0.01c\* (ac)

250 Day 10 12.460±0.018a 0.203±0.002a 500 Day 12 10.889±0.013b\*\* (ab) 0.145±0.001b\* (ab) 2000 Day 14 8.225±0.001c\*\* (ac & bc) 0.037±0.003c\*\* (ac), \* (bc)

250 Day 10 117.53± 0.84a 0.4749±0.0007a 500 Day 11 91.0± 0.55a 0.4081±0.0002b 2000 Day 14 86.13±0.81a 0.3166±0.0007c\* (ac)

> **Cell density (x106cells ml-1)**

**Specific growth rate (K')**

*Note*: Data represented in Mean ± SD. [\*] and [\*\*] indicates significant difference at P < 0.05 and P < 0.001(respectively)

**Early stationary phase**

*Note*: Data represented in Mean ± SD. [\*] and [\*\*] indicates significant difference at P < 0.05 and P < 0.001 (respective‐

Highest cell density and specific growth rate were recorded in all cultured species that were exposed to continued illumination (24:0. L/D) followed by 12:12 and 6:18 L/D respectively. Early stationary phases differed for *Nannochloropsis* sp. (day 13)*, Chaetoceros* sp. (day 12) and *C.vulgaris*. (day 14) respectively while the corresponding specific growth rate was also highest under 24hours illumination. Significant variation in both growth parameters was observed between the cultures exposed to different photoperiods (P < 0.05 or P < 0.001) (Table 3). Photosynthetic efficiency of microalgae can be enhanced by sudden alteration between light

**Table 3.** Cell density and specific growth rate of selected microalgae cultured at different photo periods.

24:0 Day 13 112.5±2.36a 0.34±0.01a 12:12 Day 17 110.17±1.77a 0.25±0.01b 8:16 Day 23 92.2± 0.87a 0.19±0.02c\* (ac)

24:0 Day 12 8.225±0.001a 0.129±0.003a 12:12 Day 17 5.293±0.009b\*\* (ab) 0.061±0.002b\* (ab) 8:16 Day 22 4.453± 0.003c\*\* (ac) 0.037±0.003c\*\* (ac)

24:0 Day 14 86.60 ± 0.17a 0.3170±0.0001a 12:12 Day 19 83.04 ± 0.19b\*\* (ab) 0.2313±0.0001b 8:16 Day 21 79.23 ± 0.21c\*\*(ac) 0.2010±0.0001c\* (ac)

**Table 2.** Cell density and specific growth rate of selected microalgae cultured at different flask volumes.

**(x106cells mL-1) Specific growth rate (K')**

*C.vulgaris* proved its adaptability to different culture volumes and lighting periods with good growth performance comparable to *Nannochloropsis* sp. and better than *Chaetoceros* sp. The cells responded positively towards continuous illumination of light by producing higher cell density and specific growth rate in the culture media. It was also noted that the culture in the low-volume flask produced an early stationary phase due to high penetration of light and continuous sharing of available nutrients in the media for faster growth and survival. On the other hand, *C.vulgaris* consistently grew at significant cell densities even in larger volume containers and shorter period of illumination than dark condition (comparable to *Nannochlor‐ opsis* sp. and better than *Chaetoceros* sp.). In another study to analyse the effect of photoperiod to the cellular essential fatty acid in these species, the photoperiod of 12:12h L/D regime is recommended for the fast and economical technique for batch culture production [65]. A better ratio of essential fatty acid accumulated in *C.vulgaris* exposed in the 12:12h if compared to 24:0 or 8:16 L/D photoperiod. 70.00 4

#### **Experiment 3: Low-cost Commercial Fertiliser for Mass Culture of Marine** *Chlorella vulgaris***: Manipulation of N:P:K Ratio** 50.00 60.00

*C.vulgaris* showed its adaptability to grow well when fertilised with a low-cost commercial N:P:K plant fertiliser (Figure 6). Duration of the log phase for *C.vulgaris* varied among treatments. The 12:6:4 and 12:8:4 ratios had a result of 3 days while the longest period was in the 15:15:15 treatment. Combined applications of urea, P+ and K+ (N:P:K; 12:6:4) produced the highest cell number (4.0×106 cells mL-1) during log period at 5 days while N:P:K; 15:15:15 (control) produced highest cell number (4.16×106 cells mL-1) at 7 days of log period. Different ratios of N:P:K, 12:8:4, 8:8:2 and 16:4:6 resulted in decrease of cell density, 3.3×106 , 3.0×106 and 2.7×106 cells mL-1, respectively. 0.00 10.00 20.00 30.00 40.00 0 3 6 9 12 15 18 Population Density (ind/ml)Day Concentrate Live Culture 6

**Figure 6.** Density (cells mL-1) of *C.vulgaris* cultured with commercial fertiliser of different N:P:K ratios


**Table 4.** Growth rate of *C.vulgaris* cultured with commercial fertiliser of different N:P:K ratios


**Table 5.** Division per day of *C.vulgaris* cultured with commercial fertiliser of different N:P:K ratios

The 12:6:4 ratios showed the best average (74%) growth rates of natural increase at log phase. The second was 12:8:4 with 61% average growth rate.15:15:15 NPK ratio showed the lowest average growth rate of 41% (Table 4). The *C.vulgaris* cell in 12:6:4 NPK ratio recorded an average division per day by 107% which was the best compared to others. In 12:8:4 ratios the average cell division was 89% and decreasingly followed by 16:4:6 and 8:8:2 for 73% and 70% respec‐ tively. The control ratio which was 15:15:15 showed the lowest average division which was 59% (Table 5).

growth rate per day (74%), maximum growth rate day-1 (107%), maximum cell density (4.0×106 cell/mL), division's day-1 (107%) and generation time (1.09 day; 26.22 hour). *C.vulga‐ ris* in control treatment (15:15:15) exhibited the poorest growth performance. Nonetheless, it is interesting to note that they experienced longer log period which could give more time for reproduction activity, thus the density did not decrease drastically as when cultured using other ratios. The fluctuation of temperature and different salinities could be the reason why

**Table 7.** Generation time (hour) for *C.vulgaris* cultured with commercial fertiliser of different N:P:K ratios

**Days in Log Phase**

**15:15:15** 0.65 2.00 2.28 2.06 4.07 2.80 2.31 **8:08:02** 0.86 1.06 3.55 2.38 1.96 **16:04:06** 1.06 0.72 3.04 3.62 2.11 **12:06:04** 0.58 1.31 1.39 1.09 **12:08:04** 3.41 0.80 0.90 1.70

**(days); Gen't Average**

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**(Hour); Gen't Average**

**NPK ratio 2nd 3rd 4th 5th 6th 7th**

**Table 6.** Generation time (days) for *C.vulgaris* cultured with commercial fertiliser of different N:P:K ratios

**NPK ratio 2nd 3rd 4th 5th 6th 7th**

**Generation time**

**Days in Log Phase**

**15:15:15** 15.56 47.99 54.84 49.55 97.66 67.32 55.49 **8:08:02** 20.60 25.55 85.22 57.05 47.11 **16:04:06** 25.44 17.28 73.01 86.79 50.63 **12:06:04** 13.97 31.34 33.37 26.22 **12:08:04** 81.76 19.14 21.54 40.82

**Generation time**

Numerous nutrient media have been use for the culture of pure *Chorella* sp. Most of those were for laboratory use and/or for low-grade production of algae. Majority of these media are composed of pure nutrients (N-8). Commercial fertilisers are least considered for *Chlorella* culture because of the conception that they do not provide required nutrients for algal growth and are mostly suitable for crop (land) agriculture. Nevertheless, it has been proved that the commercial plant fertiliser could support a freshwater *Chlorella* [66]. The use of N:P:K fertiliser could be a better choice if compared to the organic fertiliser. Organic matter has its own limitations and depends on the microbial activity to release the inorganic nutrient and it cannot

cell densities were not as high as the first and second experiment.

Measurement of generation time for *C.vulgaris* is summarised in Table 6 and Table 7. *C.vulga‐ ris* cultured with fertiliser of the ratio 12:6:4 only took 1.09 days (26.22 hour) to complete one generation of replication, the shortest time compared to other treatments. The longest gener‐ ation time was when using the15:15:15 ratio which was completed in 2.31 days (55.49 hour). The other three intermediate treatments recorded 1.70 (40.82 hour), 1.96 (47.11 hour) and 2.1 days (50.63 hour) for 12:8:4, 8:8:2 and 16:4:6 respectively. When comparing the performance by using all of the growth parameters, N:P:K; 12:6:4 ratio gave the best result with average


**Table 6.** Generation time (days) for *C.vulgaris* cultured with commercial fertiliser of different N:P:K ratios

**Days in Log Phase**

**15:15:15** 1.07 0.35 0.30 0.34 0.17 0.25 0.41 **8:08:02** 0.81 0.65 0.20 0.29 0.49 **16:04:06** 0.65 0.96 0.23 0.19 0.51 **12:06:04** 1.19 0.53 0.50 0.74 **12:08:04** 0.20 0.87 0.77 0.61

**Days in Log Phase**

**15:15:15** 1.54 0.50 0.44 0.48 0.25 0.36 0.59 **8:08:02** 1.16 0.94 0.28 0.42 0.70 **16:04:06** 0.94 1.39 0.33 0.28 0.73 **12:06:04** 1.72 0.77 0.72 1.07 **12:08:04** 0.29 1.25 1.11 0.89

The 12:6:4 ratios showed the best average (74%) growth rates of natural increase at log phase. The second was 12:8:4 with 61% average growth rate.15:15:15 NPK ratio showed the lowest average growth rate of 41% (Table 4). The *C.vulgaris* cell in 12:6:4 NPK ratio recorded an average division per day by 107% which was the best compared to others. In 12:8:4 ratios the average cell division was 89% and decreasingly followed by 16:4:6 and 8:8:2 for 73% and 70% respec‐ tively. The control ratio which was 15:15:15 showed the lowest average division which was

Measurement of generation time for *C.vulgaris* is summarised in Table 6 and Table 7. *C.vulga‐ ris* cultured with fertiliser of the ratio 12:6:4 only took 1.09 days (26.22 hour) to complete one generation of replication, the shortest time compared to other treatments. The longest gener‐ ation time was when using the15:15:15 ratio which was completed in 2.31 days (55.49 hour). The other three intermediate treatments recorded 1.70 (40.82 hour), 1.96 (47.11 hour) and 2.1 days (50.63 hour) for 12:8:4, 8:8:2 and 16:4:6 respectively. When comparing the performance by using all of the growth parameters, N:P:K; 12:6:4 ratio gave the best result with average

**NPK ratio 2nd 3rd 4th 5th 6th 7th**

**Growth rate; K' Average**

**day-1 Average**

**NPK ratio 2nd 3rd 4th 5th 6th 7th**

**Table 4.** Growth rate of *C.vulgaris* cultured with commercial fertiliser of different N:P:K ratios

**Division/ Day; Div.**

**Table 5.** Division per day of *C.vulgaris* cultured with commercial fertiliser of different N:P:K ratios

59% (Table 5).

122 Sustainable Aquaculture Techniques


**Table 7.** Generation time (hour) for *C.vulgaris* cultured with commercial fertiliser of different N:P:K ratios

growth rate per day (74%), maximum growth rate day-1 (107%), maximum cell density (4.0×106 cell/mL), division's day-1 (107%) and generation time (1.09 day; 26.22 hour). *C.vulga‐ ris* in control treatment (15:15:15) exhibited the poorest growth performance. Nonetheless, it is interesting to note that they experienced longer log period which could give more time for reproduction activity, thus the density did not decrease drastically as when cultured using other ratios. The fluctuation of temperature and different salinities could be the reason why cell densities were not as high as the first and second experiment.

Numerous nutrient media have been use for the culture of pure *Chorella* sp. Most of those were for laboratory use and/or for low-grade production of algae. Majority of these media are composed of pure nutrients (N-8). Commercial fertilisers are least considered for *Chlorella* culture because of the conception that they do not provide required nutrients for algal growth and are mostly suitable for crop (land) agriculture. Nevertheless, it has been proved that the commercial plant fertiliser could support a freshwater *Chlorella* [66]. The use of N:P:K fertiliser could be a better choice if compared to the organic fertiliser. Organic matter has its own limitations and depends on the microbial activity to release the inorganic nutrient and it cannot

0

0.5

1

1.5

Density (ind./ml)

2

2.5

3

be compared to the performance of pure nutrients. Despite good growth performance, the short period of the log phase when *C.vulgaris* is cultured using N:P:K; 12:6:4 need specific and efficient up-scaling or harvesting method, indicating that other ratios such as 15:15:15 could be a better choice.

#### **Experiment 4: Egg Production, Growth and Development of** *Apocyclops* **r***amkhamhaengi* **Fed on** *C.vulgaris*

Different diets gives significantly (P<0.05) different densities of *A. ramkhamhaengi*. The mean gravid production of *A. ramkhamhaengi* fed on *C.vulgaris* and Baker's yeast was highest on 23rd day with 1.11ind./ml and 0.67ind./ml respectively. The production peaked on 11th, 23rd, and 26th day and on 17th, 20th and 23rd day when fed with *C.vulgaris*. and Baker's yeast respec‐ tively (Figure 7). In this 30 days culture, the highest mean population density of *A. ramkham‐ haengi* fed with *C.vulgaris* was recorded on the 9th day with 3.31ind./ml and when fed on Baker's yeast was on day 19th with 1.83ind./ml (Figure 8). *A. ramkhamhaengi* fed on *C.vulgaris* showed the higher instantaneous growth rate (K) than when fed on Baker's yeast (Table 8). The period taken to double their population (Dt) was shorter in *A. ramkhamhaengi* fed *C.vulgaris* (8days) than Baker's yeast (11days).


**Table 8.** The instantaneous growth rate and doubling time of *A.ramkhamhaengi* fed on different diets. 7

8 3.5 **Figure 7.** Mean density of gravid female of *A.ramkhamhaengi* fed with *C.vulgaris* (Gravid-Ch) and Yeast (Gravid-Ys) in 30 days.

> Mean-Ch Mean-Ys

7

8

0

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30

Gravid-Ch Gravid-Ys

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Mean-Ch Mean-Ys

125

Day

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30

Day

**Figure 8.** Mean total density of *A.ramkhamhaengi* fed with *C.vulgaris* (Mean-Ch) and Yeast (Mean-Ys) in 30 days.

The development times for nauplii, copepodite, adult and gravid female were observed separately using the copepod culture fed on *C.vulgaris*. The longest period was at copepodite stage (7.33 ± 2.08days) and the shortest period was the naupliar stage which needed only 1.33 ± 0.58 days (Figure 9). The mean number of eggs produced was 21.33 ± 1.53. Hatching percentage of the three individuals of *A.ramkhamhaengi* was 96.82 ± 2.77 % (Table 9). Maturation time which is the time between the appearance of eggs and their hatching time was 1.33 ± 0.58 days. The time taken to become gravid female from the produced nauplii was about 20.67 ±

Nauplii Copepodite Adult Gravid

Stages

(offsprings)

0.2

0.4

0.6

Density (ind./ml)

0.8

1

1.2

0

3.51days and it is known as generation time.

9

Time (days)

0.00 1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00

> Gravid (broodstock)

**Figure 9.** Mean development time in each stage in *A.ramkhamhaengi* life cycle

0.5

1

1.5

Density (ind./ml)

2

2.5

3

3.5

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30

Day

Gravid-Ch Gravid-Ys

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30

Day

7

8

0

9

0.2

0.4

0.6

Density (ind./ml)

0.8

1

1.2

be compared to the performance of pure nutrients. Despite good growth performance, the short period of the log phase when *C.vulgaris* is cultured using N:P:K; 12:6:4 need specific and efficient up-scaling or harvesting method, indicating that other ratios such as 15:15:15 could

**Experiment 4: Egg Production, Growth and Development of** *Apocyclops* **r***amkhamhaengi*

Different diets gives significantly (P<0.05) different densities of *A. ramkhamhaengi*. The mean gravid production of *A. ramkhamhaengi* fed on *C.vulgaris* and Baker's yeast was highest on 23rd day with 1.11ind./ml and 0.67ind./ml respectively. The production peaked on 11th, 23rd, and 26th day and on 17th, 20th and 23rd day when fed with *C.vulgaris*. and Baker's yeast respec‐ tively (Figure 7). In this 30 days culture, the highest mean population density of *A. ramkham‐ haengi* fed with *C.vulgaris* was recorded on the 9th day with 3.31ind./ml and when fed on Baker's yeast was on day 19th with 1.83ind./ml (Figure 8). *A. ramkhamhaengi* fed on *C.vulgaris* showed the higher instantaneous growth rate (K) than when fed on Baker's yeast (Table 8). The period taken to double their population (Dt) was shorter in *A. ramkhamhaengi* fed *C.vulgaris* (8days)

**Diets Instantaneous growth rate (K) Doubling Time(Dt)(day)**

**Table 8.** The instantaneous growth rate and doubling time of *A.ramkhamhaengi* fed on different diets.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30

Gravid-Ch Gravid-Ys

> Mean-Ch Mean-Ys

Day

**Figure 7.** Mean density of gravid female of *A.ramkhamhaengi* fed with *C.vulgaris* (Gravid-Ch) and Yeast (Gravid-Ys) in

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30

Day

*C.vulgaris* 0.1150 8 Baker's yeast 0.0756 11

be a better choice.

124 Sustainable Aquaculture Techniques

**Fed on** *C.vulgaris*

than Baker's yeast (11days).

7

8

30 days.

0

0.2

0.4

0.6

Density (ind./ml)

0.8

1

1.2

0

0.5

1

1.5

Density (ind./ml)

2

2.5

3

3.5

 **Figure 8.** Mean total density of *A.ramkhamhaengi* fed with *C.vulgaris* (Mean-Ch) and Yeast (Mean-Ys) in 30 days.

The development times for nauplii, copepodite, adult and gravid female were observed separately using the copepod culture fed on *C.vulgaris*. The longest period was at copepodite stage (7.33 ± 2.08days) and the shortest period was the naupliar stage which needed only 1.33 ± 0.58 days (Figure 9). The mean number of eggs produced was 21.33 ± 1.53. Hatching percentage of the three individuals of *A.ramkhamhaengi* was 96.82 ± 2.77 % (Table 9). Maturation time which is the time between the appearance of eggs and their hatching time was 1.33 ± 0.58 days. The time taken to become gravid female from the produced nauplii was about 20.67 ± 3.51days and it is known as generation time.

**Figure 9.** Mean development time in each stage in *A.ramkhamhaengi* life cycle


**4. Conclusion**

*C.vulgaris* isolated from Bidong Island exhibited a rapid growth rate under optimum environ‐ mental conditions in the laboratory culture and was able to achieve an extremely high density when cultured in bigger containers. The photoperiod of 24:0 proved to be the best condition for cells growth but 12:12 L/D photoperiod could be the more economical. The high-density culture could be harvested using a relatively cheap, inexpensive and simple ultrafiltration technique for other use or reinoculation. This will save the space and long period of main‐ taining live algae for unexpected use. The cells collected using a ultrafiltration technique

as *C.vulgaris* paste or concentrate which could be used to enrich or maintain the zooplankton live feeds for aquaculture purposes. The *C.vulgaris* also showed its best growth performance when cultured using a common commercial plant fertiliser with certain ratio of N:P:K. This was shown by their ability to perform cell division and grow and easily adapted to certain ratio such as 15:15:15 and 12:6:4. Nonetheless, the cells density is very much lower than those cultured with the specific chemical fertilizer, Conway media. This problem could be overcome by further investigation on their ion requirement when cultured openly in hatchery or ponds. The suitability of C.vulgaris as enriched diet for a zooplankton potentially used as live feed, A. ramkhamhaengi was proved by the population increase and reached high individual density with good reproduction performance. Maintaining local species of microalgae and zooplanktons in hatchery and ponds will definitely support the continued supply of live feeds

The authors are grateful to the Ministry of Science, Technology and Innovation (MOSTI) for the funding given under the ABI-MOSTI grant (2009-2011), "Mass fry production technology for grouper (Epinephelus sp.)", the Ministry of Education Malaysia for the Knowledge Transfer Programme grant (2012-2013) Using Microalgae and Copepod Live Feeds for Brackish

1 Department of Fisheries, Faculty of Fisheries and Aqua-Industry, University Malaysia Ter‐

, Nur Farahiyah Zakaria4

and

, Lim Keng Chin2

C refrigerator. The product is called

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127

showed high viability and long shelf life when kept in 4o

for larval rearing and the aquaculture industry.

Water Aquaculture Farm, UMT-PPKJBS.

\*Address all correspondence to: zaleha@umt.edu.my

**Acknowledgements**

**Author details**

Zaleha Kassim1\*, Akbar John3

engganu, Terengganu, Malaysia

Nur Hidayah Asgnari1

**Table 9.** The number of observation (N), mean and standard deviation (SD), minimum and maximum of total number of eggs, percentage of hatching of *A.ramkhamhaengi*, maturation time and generation reared in laboratorycontrolled condition.

Production of the gravid females and the population density obviously increased when *A. ramkhamhaengi* was fed on *C.vulgaris* as compared to Baker's yeast. This finding is in agreement with the previous study [20] on the population growth and production of *A. dengizicus* fed on different diets. Population reached its peak in term of total density for several periods in the 30day culture condition indicates the existence of different populations. These populations reached their peak density in accordance with the diet taken where *Chlorella*-fed population were found to grow faster than those fed on Baker's yeast. It seemed that *A. ramkhamhaengi* has the potential to become more nutritional when enriched, thus growing faster when fed on a good-quality diet such as microalgae if compared to Baker's yeast. The nutritional value has been shown to increase when cyclopoid nauplii stage such as in *A. panamensis* was offered an enriched diet [15]. Although other microalgal diets such as *Tetraselmis* sp. and *Isochrysis* sp. could be a better choice for *Chlorella* sp. [67], at least the present finding is able to prove the potential of the species to reproduce and grow when fed on the marine *C.vulgaris* as used in this study.

A female of *A. ramkhamhaengi* fed on *C.vulgaris* could produce between 20 and 22 eggs with about 97% hatching success. This is more than what has been reported before for *A. panamen‐ sis* [68], and it could be related to many environmental factors and culture procedure. Envi‐ ronmental parameters such as temperature, food availability and predation were reported to influence the life-history strategy in copepods [69]. Binary diet of *Nannochloropsis* sp. and T-ISO improved the hatching rate by 88.1 ±2.1 % in a calanoid copepod, *Acartia sinjiensis* [70]. The brackish water cyclopoid, *A. ramkhamhaengi* has shown its potential to be cultured and reproduced under controlled conditions. The population adapted very well to the introduced diet, a marine *C.vulgaris* and a common Baker's yeast. *Chlorella*-fed population of *A. ramkham‐ haengi* grow faster and need fewer number of days to double its population than those fed on Baker's yeast.The number of eggs produced was 21.33 ± 1.15 eggs at the maturation time of 1.33 ± 0.58 days and generation time was 20.67 ± 3.51 days. The species show great potential to be cultured together with *C.vulgaris* for hatchery and farm use. A more comprehensive study is essential to investigate the reproductive biology of this species, particularly in a large-scale production system to verify its suitability in aquaculture.

#### **4. Conclusion**

**Parameter N Mean ± SD Minimum Maximum**

**Table 9.** The number of observation (N), mean and standard deviation (SD), minimum and maximum of total number of eggs, percentage of hatching of *A.ramkhamhaengi*, maturation time and generation reared in laboratory-

Production of the gravid females and the population density obviously increased when *A. ramkhamhaengi* was fed on *C.vulgaris* as compared to Baker's yeast. This finding is in agreement with the previous study [20] on the population growth and production of *A. dengizicus* fed on different diets. Population reached its peak in term of total density for several periods in the 30day culture condition indicates the existence of different populations. These populations reached their peak density in accordance with the diet taken where *Chlorella*-fed population were found to grow faster than those fed on Baker's yeast. It seemed that *A. ramkhamhaengi* has the potential to become more nutritional when enriched, thus growing faster when fed on a good-quality diet such as microalgae if compared to Baker's yeast. The nutritional value has been shown to increase when cyclopoid nauplii stage such as in *A. panamensis* was offered an enriched diet [15]. Although other microalgal diets such as *Tetraselmis* sp. and *Isochrysis* sp. could be a better choice for *Chlorella* sp. [67], at least the present finding is able to prove the potential of the species to reproduce and grow when fed on the marine *C.vulgaris* as used in

A female of *A. ramkhamhaengi* fed on *C.vulgaris* could produce between 20 and 22 eggs with about 97% hatching success. This is more than what has been reported before for *A. panamen‐ sis* [68], and it could be related to many environmental factors and culture procedure. Envi‐ ronmental parameters such as temperature, food availability and predation were reported to influence the life-history strategy in copepods [69]. Binary diet of *Nannochloropsis* sp. and T-ISO improved the hatching rate by 88.1 ±2.1 % in a calanoid copepod, *Acartia sinjiensis* [70]. The brackish water cyclopoid, *A. ramkhamhaengi* has shown its potential to be cultured and reproduced under controlled conditions. The population adapted very well to the introduced diet, a marine *C.vulgaris* and a common Baker's yeast. *Chlorella*-fed population of *A. ramkham‐ haengi* grow faster and need fewer number of days to double its population than those fed on Baker's yeast.The number of eggs produced was 21.33 ± 1.15 eggs at the maturation time of 1.33 ± 0.58 days and generation time was 20.67 ± 3.51 days. The species show great potential to be cultured together with *C.vulgaris* for hatchery and farm use. A more comprehensive study is essential to investigate the reproductive biology of this species, particularly in a large-scale

production system to verify its suitability in aquaculture.

Number of eggs 3 21.33 ± 1.15 20 22 % hatching 3 96.82 ± 2.77 95 100 Maturation time(days) 3 1.33 ± 0.58 1 2 Generation time(days) 3 20.67 ± 3.51 17 24

controlled condition.

126 Sustainable Aquaculture Techniques

this study.

*C.vulgaris* isolated from Bidong Island exhibited a rapid growth rate under optimum environ‐ mental conditions in the laboratory culture and was able to achieve an extremely high density when cultured in bigger containers. The photoperiod of 24:0 proved to be the best condition for cells growth but 12:12 L/D photoperiod could be the more economical. The high-density culture could be harvested using a relatively cheap, inexpensive and simple ultrafiltration technique for other use or reinoculation. This will save the space and long period of main‐ taining live algae for unexpected use. The cells collected using a ultrafiltration technique showed high viability and long shelf life when kept in 4o C refrigerator. The product is called as *C.vulgaris* paste or concentrate which could be used to enrich or maintain the zooplankton live feeds for aquaculture purposes. The *C.vulgaris* also showed its best growth performance when cultured using a common commercial plant fertiliser with certain ratio of N:P:K. This was shown by their ability to perform cell division and grow and easily adapted to certain ratio such as 15:15:15 and 12:6:4. Nonetheless, the cells density is very much lower than those cultured with the specific chemical fertilizer, Conway media. This problem could be overcome by further investigation on their ion requirement when cultured openly in hatchery or ponds. The suitability of C.vulgaris as enriched diet for a zooplankton potentially used as live feed, A. ramkhamhaengi was proved by the population increase and reached high individual density with good reproduction performance. Maintaining local species of microalgae and zooplanktons in hatchery and ponds will definitely support the continued supply of live feeds for larval rearing and the aquaculture industry.

#### **Acknowledgements**

The authors are grateful to the Ministry of Science, Technology and Innovation (MOSTI) for the funding given under the ABI-MOSTI grant (2009-2011), "Mass fry production technology for grouper (Epinephelus sp.)", the Ministry of Education Malaysia for the Knowledge Transfer Programme grant (2012-2013) Using Microalgae and Copepod Live Feeds for Brackish Water Aquaculture Farm, UMT-PPKJBS.

#### **Author details**

Zaleha Kassim1\*, Akbar John3 , Lim Keng Chin2 , Nur Farahiyah Zakaria4 and Nur Hidayah Asgnari1

\*Address all correspondence to: zaleha@umt.edu.my

1 Department of Fisheries, Faculty of Fisheries and Aqua-Industry, University Malaysia Ter‐ engganu, Terengganu, Malaysia

2 Institute of Tropical Aquaculture University Malaysia Terengganu, Terengganu, Malaysia

[10] Zaleha,K., Ibrahim, B., Akhbar John, B., Kamaruzzaman, B.Y. Generation times of some marine harpacticoid species in laboratory condition. Journal of Biological Scien‐

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129

[11] Carli, A., Mariottini, G. L. & Pane, L. Influence of nutrition on fecundity and survival in *Tigriopus fulvus* Fischer (Copepoda, Harpacticoida). Aquaculture 1995;

[12] Cutts, C.J. Culture of harpacticoid copepods: potential as live feed for rearing marine

[13] Ananth, S. and Santhanam, P. Laboratory culture and biochemical profile of marine

[14] Rhodes. A. 2003. Methods for high density batch culture of *Nitokra lacustris*, a marine harpacticoid copepod.The Big Fish Bang. In: Howard I. Browman, A., Skiftesvik, B. (eds.) Proceedings of the 26th Annual Larval Fish Conference. Institute of Marine Re‐

[15] Sumiarsa, G.S. Cyclopoid copepod nauplii Apocyclops panamensis: mass production method in outdoor ponds and their fatty acid profiles.VDM Verlag Dr.muller GmhH

[16] Drillet,G., Frouël,S., Sichlau, M.H., Jepsen, P.M., Jonas K., Højgaard, J.K., Joard‐ er,A.K., Hansen, B.W. Status and recommendations on marine copepod cultivation

[17] Zaleha, K., Farahiyah, I. J. Culture and growth of a marine harpacticoid, *Pararobertso‐ nia* sp in different salinity and temperature. Sains Malaysiana 2010; 39(1): 135–140

[18] Kassim, Z.,Ibrahim, B. Culture of Harpacticoid Copepods: Understanding the Repro‐ duction and Effect of Environmental Factors. In: Muchlisin, Z. (ed.) Aquaculture. Ri‐

[19] Rhodes. A. Methods for high density batch culture of *Nitokra lacustris*, a marine har‐ pacticoid copepod.The Big Fish Bang. In: Browman, H.I., Skiftesvik, A.B. (eds.). Pro‐ ceedings of the 26th Annual Larval Fish Conference. Institute of Marine Research,

[20] Farhadian, O., Yusoff, M.F., Arshad, A. Population growth and production of *Apocy‐ clops dengizicus*( Copepoda: Cyclopoida) Fed on Different Diets. Journal of the World Aquaculture Society, 2008; 39(2), 384-396. DOI: 10.1111/j.1749-7345.2008.00172.x

[21] Chullasorn, S., Kangtia, P., Pinkaew, K.,Ferrari, F.D. *Apocyclops ramkhamhaengi* sp. nov. (Copepoda: Cyclopoida) in a Culture Originating from Brackish Waters of

[22] Apt, K. E., Behrens, P. W. 1999. Commercial developments in microalgal biotechnolo‐ gy. *Journal of Phycology, 35*(2), 215-226. doi: 10.1046/j.1529-8817.1999.3520215.x

Chang Island, Trat Province,Thailand. Zoological Studies 2008; 47(3),326-337.

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fish. Advances in Marine Biology 2003; 44:295-316.

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search, Bergen, Norway.

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jeka: Intech; 2012.p343-360.

3 Kuliyyah of Science, International Islamic University Malaysia, Kuantan Campus, Malaysia

4 Unit of Farmer's Organisation of South Johor Bahru, Johor, Malaysia

#### **References**


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2 Institute of Tropical Aquaculture University Malaysia Terengganu, Terengganu, Malaysia

3 Kuliyyah of Science, International Islamic University Malaysia, Kuantan Campus,

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**Chapter 5**

**Use of Yeasts as Probiotics in Fish Aquaculture**

According to the UN Food and Agriculture Organization (FAO), "aquaculture, probably the fastest growing food-producing sector, now accounts for nearly 50 percent of the world's food fish" [1]. However, production is hampered by unpredictable mortalities that may be due to the negative interactions between fish and pathogenic bacteria. Intensive fish farming has resulted in a problematic growth in bacterial diseases, prompting the necessary and intensive

Because of the rapid expansion of aquaculture, a limited supply of fishmeal has the potential to impede the future growth of this industry. Consequently, much effort has been given to studying other protein and oil sources, but finding a suitable alternative has proved to be challenging. Among the alternatives, plant-based formulations are the least expensive, and many such formulations have a suitable protein profile and long-term availability. Oilseeds, in particular soybean and grain products, have great potential as alternative sources of fish feed. Soybeans are rich in protein and represent the most commonly used plant protein source on the world market. Soybean meal (SBM) has already become an important protein source in fish feed. However, the inclusion of some vegetable proteins, such as SBM, in the diets of fish at levels of >20% may induce intestinal disorders including pathomorphological changes in the distal intestinal epithelium accompanied by diarrhea [2, 3], sometimes caused by the antinutritional factors that are present in SBM. The addition of probiotics (acid lactic bacteria) to

starter diets appeared to improve SBM utilization in first feeding rainbow trout [4].

optimizing food utilization, especially for new fish species.

In this context, two of the major challenges in fish aquaculture facilities are 1) the control of diseases, especially during the earliest life stages, and 2) the improvement of nutrition by

It is well recognized that the bacterial microbiota of fish is beneficial to the host and affects important biological processes, including nutrient processing and absorption, the develop‐

> © 2014 Navarrete and Tovar-Ramírez; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Paola Navarrete and Dariel Tovar-Ramírez

Additional information is available at the end of the chapter

http://dx.doi.org/10.5772/57196

use of antimicrobials for their treatment.

**1. Introduction**

## **Use of Yeasts as Probiotics in Fish Aquaculture**

Paola Navarrete and Dariel Tovar-Ramírez

Additional information is available at the end of the chapter

http://dx.doi.org/10.5772/57196

#### **1. Introduction**

According to the UN Food and Agriculture Organization (FAO), "aquaculture, probably the fastest growing food-producing sector, now accounts for nearly 50 percent of the world's food fish" [1]. However, production is hampered by unpredictable mortalities that may be due to the negative interactions between fish and pathogenic bacteria. Intensive fish farming has resulted in a problematic growth in bacterial diseases, prompting the necessary and intensive use of antimicrobials for their treatment.

Because of the rapid expansion of aquaculture, a limited supply of fishmeal has the potential to impede the future growth of this industry. Consequently, much effort has been given to studying other protein and oil sources, but finding a suitable alternative has proved to be challenging. Among the alternatives, plant-based formulations are the least expensive, and many such formulations have a suitable protein profile and long-term availability. Oilseeds, in particular soybean and grain products, have great potential as alternative sources of fish feed. Soybeans are rich in protein and represent the most commonly used plant protein source on the world market. Soybean meal (SBM) has already become an important protein source in fish feed. However, the inclusion of some vegetable proteins, such as SBM, in the diets of fish at levels of >20% may induce intestinal disorders including pathomorphological changes in the distal intestinal epithelium accompanied by diarrhea [2, 3], sometimes caused by the antinutritional factors that are present in SBM. The addition of probiotics (acid lactic bacteria) to starter diets appeared to improve SBM utilization in first feeding rainbow trout [4].

In this context, two of the major challenges in fish aquaculture facilities are 1) the control of diseases, especially during the earliest life stages, and 2) the improvement of nutrition by optimizing food utilization, especially for new fish species.

It is well recognized that the bacterial microbiota of fish is beneficial to the host and affects important biological processes, including nutrient processing and absorption, the develop‐

© 2014 Navarrete and Tovar-Ramírez; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ment of the mucosal immune system, and angiogenesis, as was demonstrate in gnotobiotic mice. In larval gnotobiotic zebrafish studies, was shown that the microbiota also influences enterocyte morphology and epithelial renewal, host-transcriptional responses to the micro‐ biota regarding epithelial proliferation, nutrient and xenobiotic metabolism, and immune responses [5].

display intense carotenoid pigments and tend to use a broader range of carbon compounds more efficiently at lower concentrations [7]; and 4) ascomycete yeasts are often found in specialized niches involving interactions with plants and insects or other invertebrate animals that they rely upon for dispersal, while basidiomycete yeasts seem to be adapted to the colonization of nutrient-poor solid surfaces and may not rely to the same extent on animal

**Marine samples Identified yeast Identification method Reference**

identification of cultivated yeasts by the methods described by Lodder and Kreger-van Rij [23]

Use of Yeasts as Probiotics in Fish Aquaculture

http://dx.doi.org/10.5772/57196

137

identification of cultivated yeasts by the methods described by Lodder and Kreger-van Rij [23]

identification of cultivated yeasts by the methods described by Lodder and Kreger-van Rij [23]

[25]

[25]

[25]

[25]

[27]

and Wickerham [24].

and Wickerham [24].

and Wickerham [24].

and Wickerham [24].

Lodder [26].

by the methods described by Lodder and Kreger-van Rij [23]

identification of cultivated yeasts by the methods described by

*Candida guilliermondii C. parapsilosis Rhodotorula rubra*

*R. rubra Cryptococcus*

*R. graminis R. glutinis*

*Candida krusei Candida valida*

*laurentii*

*flavescens*

*Hansenula spp. Rhodotorula marina*

*Rhodotorula rubra Rhodotorula spp. Torulopsis candida Trichosporon cutaneum*

*Cryptococcus laurentii var.*

*Cryptococcus laurentii var.*

*Hansenula saturnus var. saturnus*

*Rhodotorula minuta var. minuta*

Marine vegetation *Cryptococcus albidus* identification of cultivated yeasts

vectors for their dispersal [10].

Gulf Stream 15 miles east of the

coast of South Florida.

Northern Biscayne Bay *Candida tropicalis*

Marine grass flats (Soldier Key) *Rhodotorula pilimanne*

Suwannee Florida estuary (water) *Candida guilliermondii*

Yeast have been identified as part of the normal microbiota of both wild and farmed fish, and their role in fish health and nutrition has been addressed in the literature, as yeast have been used either alive to feed live food organisms or after processing as a feed ingredient after demonstrating an artificial colonization of the intestinal host.

Even when accounting for less than 1% of the total microbial isolates in the host, yeast can represent a major physiological contribution beyond what has been observed for probiotic bacteria; in fact, cell volumes from yeast may be larger than those of bacteria by a hundredfold [6]. In contrast to bacteria, yeast cells utilize a wide spectrum of simple and more complex organic compounds. This phenomenon results from the extensive metabolic potential of yeast, which is reflected by the production of diverse enzymes. Polyamines secreted by yeasts are also involved in the maturation of the digestive tract of fish larvae. Furthermore, some yeast species and their components, such as β-glucans and mannoproteins, can stimulate the immune and antioxidant systems of the host. Understanding the participation of yeast microbiota in fish health and nutrition may improve both the sanitary conditions and the production performance of fish.

The aim of this chapter is to describe the current knowledge regarding the use of yeasts as probiotics in aquaculture systems. The chapter will include a recent review on the presence and diversity of yeast in marine and aquaculture systems, focusing on the yeast diversity found in the fish gut microbiota. The chapter will also include basic information on the molecular methods used for yeast identification. Finally, the chapter will emphasize topics related to the essential role of probiotic yeasts used in disease control and nutritional improvements in aquaculture, with a special focus on the beneficial effects of yeast β-glucans.

#### **2. Yeast identified in the marine and other aquatic environments**

Yeasts are unicellular eukaryotic microorganisms that are taxonomically placed within the phyla Ascomycota and Basidiomycota within the Kingdom Fungi [7]. Ascomycete yeasts comprise approximately 1,000 phylogenetically diverse species that have recently been assigned to 14 different lineages on the basis of multigene sequence analysis [8]. The other species of yeasts are classified as the basidiomycetes [9]. Some of the general characteristics and ecological properties of each phylum include the following: 1) the cell wall polysaccharide composition is dominated by chitin in the basidiomycetes and by β-glucans in the ascomycetes; 2) the guanine + cytosine (G + C) composition of the nuclear DNA tends to be higher than 50% in basidiomycetes and lower than 50% in ascomycetes; 3) ascomycetes yeasts are generally more fermentative, more copiotrophic (but at the same time nutritionally specialized), more fragrant, and mostly hyaline, while basidiomycete yeasts more often form mucoid colonies, display intense carotenoid pigments and tend to use a broader range of carbon compounds more efficiently at lower concentrations [7]; and 4) ascomycete yeasts are often found in specialized niches involving interactions with plants and insects or other invertebrate animals that they rely upon for dispersal, while basidiomycete yeasts seem to be adapted to the colonization of nutrient-poor solid surfaces and may not rely to the same extent on animal vectors for their dispersal [10].

ment of the mucosal immune system, and angiogenesis, as was demonstrate in gnotobiotic mice. In larval gnotobiotic zebrafish studies, was shown that the microbiota also influences enterocyte morphology and epithelial renewal, host-transcriptional responses to the micro‐ biota regarding epithelial proliferation, nutrient and xenobiotic metabolism, and immune

Yeast have been identified as part of the normal microbiota of both wild and farmed fish, and their role in fish health and nutrition has been addressed in the literature, as yeast have been used either alive to feed live food organisms or after processing as a feed ingredient after

Even when accounting for less than 1% of the total microbial isolates in the host, yeast can represent a major physiological contribution beyond what has been observed for probiotic bacteria; in fact, cell volumes from yeast may be larger than those of bacteria by a hundredfold [6]. In contrast to bacteria, yeast cells utilize a wide spectrum of simple and more complex organic compounds. This phenomenon results from the extensive metabolic potential of yeast, which is reflected by the production of diverse enzymes. Polyamines secreted by yeasts are also involved in the maturation of the digestive tract of fish larvae. Furthermore, some yeast species and their components, such as β-glucans and mannoproteins, can stimulate the immune and antioxidant systems of the host. Understanding the participation of yeast microbiota in fish health and nutrition may improve both the sanitary conditions and the

The aim of this chapter is to describe the current knowledge regarding the use of yeasts as probiotics in aquaculture systems. The chapter will include a recent review on the presence and diversity of yeast in marine and aquaculture systems, focusing on the yeast diversity found in the fish gut microbiota. The chapter will also include basic information on the molecular methods used for yeast identification. Finally, the chapter will emphasize topics related to the essential role of probiotic yeasts used in disease control and nutritional improvements in

Yeasts are unicellular eukaryotic microorganisms that are taxonomically placed within the phyla Ascomycota and Basidiomycota within the Kingdom Fungi [7]. Ascomycete yeasts comprise approximately 1,000 phylogenetically diverse species that have recently been assigned to 14 different lineages on the basis of multigene sequence analysis [8]. The other species of yeasts are classified as the basidiomycetes [9]. Some of the general characteristics and ecological properties of each phylum include the following: 1) the cell wall polysaccharide composition is dominated by chitin in the basidiomycetes and by β-glucans in the ascomycetes; 2) the guanine + cytosine (G + C) composition of the nuclear DNA tends to be higher than 50% in basidiomycetes and lower than 50% in ascomycetes; 3) ascomycetes yeasts are generally more fermentative, more copiotrophic (but at the same time nutritionally specialized), more fragrant, and mostly hyaline, while basidiomycete yeasts more often form mucoid colonies,

aquaculture, with a special focus on the beneficial effects of yeast β-glucans.

**2. Yeast identified in the marine and other aquatic environments**

demonstrating an artificial colonization of the intestinal host.

responses [5].

136 Sustainable Aquaculture Techniques

production performance of fish.



**Marine samples Identified yeast Identification method Reference**

morphological and biochemical

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http://dx.doi.org/10.5772/57196

5.8S-ITS rDNA sequencing of

5.8S-ITS rDNA sequencing of

and D1/D2 of the 26S rDNA

and D1/D2 of the 26S rDNA

and D1/D2 of the 26S rDNA

26SrRNA gene sequencing of

and D1/D2 of the 26S rDNA

Cloning and sequencing [35]

cultured yeasts

[28]

139

[29]

[30]

[30]

[31]

[32]

[32]

[33]

[34]

identification

sequencing

cultivated yeasts

cultivated yeasts

*Kluyveromyces nonfermentans* 18S rDNA, 5.8S rDNA and ITS

*R. bentica* sequencing of ITS, 5.8S rDNA,

*Sporobolomyces roseus Sporobolomyces puniceus Sporobolomyces hosaticus*

*Sporobolomyces salmonicolor*

Sagami bay (deep-sea tubeworm) *R. lamellibrachii* sequencing of ITS, 5.8S rDNA,

Sagami Bay (deep-sea clam) *R. calyptogenae* sequencing of ITS, 5.8S rDNA,

*Rhodosporidium babjevae*

Northwest Pacific ocean *R. pacifica* sequencing of ITS, 5.8S rDNA,

*Saccharomyces cerevisiae Debaryomyces hansenii*

*R. diobovatum R. kratochvilovae R. sphaerocarpum R. toruloides Rh. Mucilaginosa Rh. minuta S. dacryoides*

*R. aurantiaca R. glutinis R. minuta R. mucilaginosa*

*S. shibatanus*

*R. mucilaginosa*

*C. atlantica C. atmosphaerica C. lodderae C. parapsilosis D. hansenii P. guilliermondii*

Western coast of Baja California Sur,

Suruga and Sagami Bay (sediments,

Northwest Pacific Ocean (benthic

Northwest Pacific Ocean (sediments)*R. glutinis*

Sagami Bay and Iheya Ridge (deep-

Deep-sea hydrothermal systems of

11 deep-sea samples *Pichia fermentans*

sea tubeworm)

the Mid-Atlantic Rift

crab and *Calyptogena*)

Mexico

animals)


**Marine samples Identified yeast Identification method Reference**

identification of cultivated yeasts by the methods described by

[27]

Lodder [26].

*Brettanomyces intermedius*

*Cryptococcus dimennae Cryptococcus laurentii var.*

*Cryptococcus laurentii var.*

*Debaryomyces cantarellii Debaryomyces phaffii Hansenula beijerinckii*

*Hansenula saturnus var. saturnus Kluyveromyces polysporous Leucosporidium capsuligenum Pichia membranaefaciens*

*laurentii*

*flavescens*

*Pichia ohmeri Rhodotorula glutinis Rhodotorula graminis Rhodotorula lactosa Rhodotorula marina Rhodotorula rubra Rhodotorula spp. Saccharomyces spp. Torulopsis candida Torulopsis inconspicua Torulopsis mogii Torulopsis spp.*

*Trichosporon aculeatum Trichosporon cutaneum Trichosporon penicillatum*

*Candida boidinii Candida diversa Candida glaebosa Candida ingens Candida krusei Candida lambica Candida maritima Candida melibiosica Candida silvae Candida solani Candida valida Candida spp.*

Suwannee Florida estuary

138 Sustainable Aquaculture Techniques

(sediment)


**Marine samples Identified yeast Identification method Reference**

morphological and biochemical

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141

morphological and biochemical

morphological and biochemical

morphological and biochemical

morphological and biochemical

[38]

[38]

[38]

[38]

[38]

identification

identification

identification

identification

identification

*Rhodotorula Pichia*

*Yarrowia Lipomyces Rhodotorula Debaryomyces Pichia Wingea Dekkera*

*Candida Wingea Dekkera Rhodotorula*

*Candida Cryptococcus Rhodotorula Bullera Lipomyces Oosporidium Dekkera*

*Rhodotorula Cryptococcus Yarrowia Pichia Bullera Wingea Dekkera Oosporidium*

*Wingea Rhodotorula Bullera Lipomyces Trichosporon*

**Table 1.** Yeast identified in the marine and other aquatic environment

Arabian sea (500 m depth) *Candida*

Arabian sea (1000 m depth) *Lypomyces*

Bay of Bengal (200 m depth) *Wingea*

Bay of Bengal (500 m depth) *Candida*

Bay of Bengal (1000 m depth) *Candida*


**Table 1.** Yeast identified in the marine and other aquatic environment

**Marine samples Identified yeast Identification method Reference**

5.8S rDNA, ITS2 and D1/D2 of

5.8S-ITS rDNA sequencing of

[36]

[37]

[14]

[14]

[14]

[14]

[14]

[14]

[14]

[14]

[14]

[38]

the 26S rDNA

cultivated yeasts

cultured yeasts

cultured yeasts

cultured yeasts

cultured yeasts

cultured yeasts

cultured yeasts

cultured yeasts

cultured yeasts

cultured yeasts

identification

26SrRNA gene sequencing of

26SrRNA gene sequencing of

morphological and biochemical

26SrRNA gene sequencing of

*R. mucilaginosa* 26SrRNA gene sequencing of

*Debaryomyces hansenii* 26SrRNA gene sequencing of

*Candida atlantica* 26SrRNA gene sequencing of

Japan Trench (deep-sea sediments) *Dipodascus tetrasporeus* Sequencing of 18S rDNA, ITS1,

*Saccharomyces yakushimaensis*

*Rhodosporidium diobovatum Sporobolomyces roseus*

carbonate colonization module *Cryptococcus uzbekistanensis* 26SrRNA gene sequencing of

*B. azoricus* mussel *Leucosporidium scottii* 26SrRNA gene sequencing of

*Candida viswanathii*

*triangularis Hortaea werneckii*

*Lipomyces Yarrowia*

Deep-sea coral *Candida sp.* 26SrRNA gene sequencing of

*Candida tropicalis Pichia anomala Issatchenkia orientalis*

*Kodamaea ohmeri Hanseniaspora uvarum Kazachstania jiainicus Torulaspora delbrueckii*

*C. glabrata*

Coastal waters of northeastern

140 Sustainable Aquaculture Techniques

Taiwan

Deep-sea shrimps Deep-sea mussels

*R. exoculata exuviae* in

*azoricus* and a sponge

*R. exoculata exuviae* in decomposition *B. azoricus*

decomposition on smoker rocks, *B.*

R. exoculata, *M. fortunata*, a deepsea coral and the gills of the gastropod *Ifremeria nautilei*

Deep-sea sponge *Pichia guilliermondii*

*B. azoricus Phaeotheca*

Arabian sea (200 m depth) *Candida*

Yeasts are widely distributed in several natural environments such as soil, freshwater, and seawater. Their numbers and species distributions are dependent on the concentrations and types of available organic materials. Nearshore environments are usually inhabited by 10 to 1000 of yeast cell/L of water, whereas low organic surface to deep sea oceanic regions contain 10 or fewer cells/L. Marine yeasts are divided into "obligate" and "facultative" groups. When yeast are able to grow on a marine substrate and are frequently collected from the marine environment, they are called "obligate marine" yeasts; in contrast, "facultative marine" yeasts can also be recovered from terrestrial habitats. Marine yeasts participate in several ecological processes in the sea, especially in estuarine and nearshore environments, such as the decom‐ position of plant substrates [11], nutrient recycling [12], and the biodegradation of oil/ recalcitrant compounds [13]; they are also part of the microbiota of marine and aquaculture animals [6, 14]. This functional diversity is due, in part, to the fact that yeasts have extraordi‐ nary metabolic potential. This potential is available for exploitation [15-20], but notably, the vast majority of this potential has yet to be discovered. Several yeast compounds have significant biological value as reagents, cell proteins, vitamins, pigments, and enzymes. Different yeast species have been identified in several marine locations (Table 1). For excellent reviews on marine yeasts, see [21, 22]. The ascomycete yeasts *Debaryomyces hansenii*, and *Candida* spp. are typical ubiquitous species found in oceanic, and other aquatic environments. Basidiomycete yeasts often account for the majority of the total yeast population found in oligotrophic oceanic water. Among the basidiomycete yeasts, some species of *Cryptococcus*, *Rhodotorula*, and *Sporobolomyces* are widespread across various oceanic regions [22].

summer, with *Candida*, *Hyphopichia burtonii*, *Aureobasidium pullulans*, *Hansenula anomala* and

It has been reported that yeasts isolated from the intestine of rainbow trout may adhere to and grow in intestinal mucus [41]. Some yeast cells can colonize the intestine of fish after dietary introduction [42], and this ability to colonize may be related to cell surface hydrophobicity [43] and the ability of the strains to grow on mucus [41, 44]. Some experiments have shown that high levels of yeast intestinal colonization can be achieved when a pure culture of yeast is inoculated into fish. Rainbow trout and turbot were inoculated with *Rhodotorula glutinis* and

feces were recovered in three separate colonization experiments [45]. It is important to note that the majority of the studies published until 2007, on the yeast species identified from the aquaculture fish gut, were published by the Gatesoupe Lab [6]. Later, studies focused more on the probiotic effects of different yeast strains in aquaculture fish (as described below), and

**Location Fish intestine Identified yeast Identification method Reference**

[24].

[24].

[24].

, and 2.3 × 109 viable yeast cells/g of intestine or

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143

identification of cultivated yeast by the methods described by Lodder and Kreger-van Rij [23] and Wickerham

identification of cultivated yeast by the methods described by Lodder and Kreger-van Rij [23] and Wickerham

identification of cultivated yeast by the methods described by Lodder and Kreger-van Rij [23] and Wickerham

[25]

[25]

[25]

, 3.1 × 106

*T. cutaneum C. parapsilosis C. guilliermondi C. tropicalis R. rubra R. pilimanae H. anomala D. kloeckeri II. valbyensis*

*R. minuta C. parapsolosis R. glutinis*

*C. tropicalis R. pilimanae Torulopsisspp. C. parapsilosis*

*Cryptococcus laurentii* being most frequently identified [40].

less on the actual yeast species isolated from the fish gut.

*Haemulon Carana Anisotremus*

*Haemulon Stenotomus Ocyurus Anisotremus Lachnolainus*

*Ilaemulon Lutjanus Sphyraena Seriola Balistes Malacanthus Halichoeres Holocentrus Carana*

*D. hansenii* HF1, and up to 3.8 × 104

Estuarine and coastal areas (Biscayne Bay, Florida)

Tropical island-(Bimini, The

Tropical island-(Bimini, The

Bahamas, 1960)

Bahamas, 1961)

#### **3. Yeast as part of the gut microbiota of fish**

Most of the literature on the yeast microbiota of fish is based on the identification of cultivable yeast (Table 2). Yeast have been isolated from the gills, skin, mouths, feces and guts of different fish species. The occurrence of yeast in the fish gut is variable and can fluctuate from nondetectable levels to 107 CFU/g of intestinal content [6]. Both ascomycete and basidiomycete yeasts have been isolated from fish intestines (Table 2): among ascomycetes, *Saccharomyceta‐ ceae* (which include *Candida, Pichia, Saccharomyces,* and *Debaryomyces*) is likely the most important family, while basidiomycetes, include the genera *Rhodotorula, Cryptococcus, Sporo‐ bolomyces,* and *Trichosporon* [6]. The yeasts *Metschnikowia zobelii, Kloeckera apiculata,* and *Debaryomyces* sp. dominate in some marine fish (*Tachurus symmetricus* and *Atherinopis affinis littoralis*) [39], and in these fish species, the yeast concentration was significantly higher inside the fish than in the surrounding sea water, suggesting that the yeast may grow inside the fish intestine [39]. The ascomycetes *Debaryomyces hansenii*, *Candida* sp., and *Saccharomyces cerevi‐ siae*, the basidiomycete *Leucosporidium* sp., and *Rhodotorula* have been frequently isolated as the dominant yeast found in the rainbow trout intestine [6]. Yeast can also be isolated from the waters of fishponds with different abundance and diversity depending on the season of the year. Fishponds from the Záhorie Lowlands in Slovakia, sampled in summer, harbor the most heterogeneous yeast species, with *Aureobasidium*, *Sporobolomyces*, *Candida*, and *Cryptococcus* as the most frequently isolated species [40]. In autumn, the yeast numbers were higher than in summer, with *Candida*, *Hyphopichia burtonii*, *Aureobasidium pullulans*, *Hansenula anomala* and *Cryptococcus laurentii* being most frequently identified [40].

Yeasts are widely distributed in several natural environments such as soil, freshwater, and seawater. Their numbers and species distributions are dependent on the concentrations and types of available organic materials. Nearshore environments are usually inhabited by 10 to 1000 of yeast cell/L of water, whereas low organic surface to deep sea oceanic regions contain 10 or fewer cells/L. Marine yeasts are divided into "obligate" and "facultative" groups. When yeast are able to grow on a marine substrate and are frequently collected from the marine environment, they are called "obligate marine" yeasts; in contrast, "facultative marine" yeasts can also be recovered from terrestrial habitats. Marine yeasts participate in several ecological processes in the sea, especially in estuarine and nearshore environments, such as the decom‐ position of plant substrates [11], nutrient recycling [12], and the biodegradation of oil/ recalcitrant compounds [13]; they are also part of the microbiota of marine and aquaculture animals [6, 14]. This functional diversity is due, in part, to the fact that yeasts have extraordi‐ nary metabolic potential. This potential is available for exploitation [15-20], but notably, the vast majority of this potential has yet to be discovered. Several yeast compounds have significant biological value as reagents, cell proteins, vitamins, pigments, and enzymes. Different yeast species have been identified in several marine locations (Table 1). For excellent reviews on marine yeasts, see [21, 22]. The ascomycete yeasts *Debaryomyces hansenii*, and *Candida* spp. are typical ubiquitous species found in oceanic, and other aquatic environments. Basidiomycete yeasts often account for the majority of the total yeast population found in oligotrophic oceanic water. Among the basidiomycete yeasts, some species of *Cryptococcus*,

*Rhodotorula*, and *Sporobolomyces* are widespread across various oceanic regions [22].

Most of the literature on the yeast microbiota of fish is based on the identification of cultivable yeast (Table 2). Yeast have been isolated from the gills, skin, mouths, feces and guts of different fish species. The occurrence of yeast in the fish gut is variable and can fluctuate from non-

yeasts have been isolated from fish intestines (Table 2): among ascomycetes, *Saccharomyceta‐ ceae* (which include *Candida, Pichia, Saccharomyces,* and *Debaryomyces*) is likely the most important family, while basidiomycetes, include the genera *Rhodotorula, Cryptococcus, Sporo‐ bolomyces,* and *Trichosporon* [6]. The yeasts *Metschnikowia zobelii, Kloeckera apiculata,* and *Debaryomyces* sp. dominate in some marine fish (*Tachurus symmetricus* and *Atherinopis affinis littoralis*) [39], and in these fish species, the yeast concentration was significantly higher inside the fish than in the surrounding sea water, suggesting that the yeast may grow inside the fish intestine [39]. The ascomycetes *Debaryomyces hansenii*, *Candida* sp., and *Saccharomyces cerevi‐ siae*, the basidiomycete *Leucosporidium* sp., and *Rhodotorula* have been frequently isolated as the dominant yeast found in the rainbow trout intestine [6]. Yeast can also be isolated from the waters of fishponds with different abundance and diversity depending on the season of the year. Fishponds from the Záhorie Lowlands in Slovakia, sampled in summer, harbor the most heterogeneous yeast species, with *Aureobasidium*, *Sporobolomyces*, *Candida*, and *Cryptococcus* as the most frequently isolated species [40]. In autumn, the yeast numbers were higher than in

CFU/g of intestinal content [6]. Both ascomycete and basidiomycete

**3. Yeast as part of the gut microbiota of fish**

detectable levels to 107

142 Sustainable Aquaculture Techniques

It has been reported that yeasts isolated from the intestine of rainbow trout may adhere to and grow in intestinal mucus [41]. Some yeast cells can colonize the intestine of fish after dietary introduction [42], and this ability to colonize may be related to cell surface hydrophobicity [43] and the ability of the strains to grow on mucus [41, 44]. Some experiments have shown that high levels of yeast intestinal colonization can be achieved when a pure culture of yeast is inoculated into fish. Rainbow trout and turbot were inoculated with *Rhodotorula glutinis* and *D. hansenii* HF1, and up to 3.8 × 104 , 3.1 × 106 , and 2.3 × 109 viable yeast cells/g of intestine or feces were recovered in three separate colonization experiments [45]. It is important to note that the majority of the studies published until 2007, on the yeast species identified from the aquaculture fish gut, were published by the Gatesoupe Lab [6]. Later, studies focused more on the probiotic effects of different yeast strains in aquaculture fish (as described below), and less on the actual yeast species isolated from the fish gut.



**4.** *Debaryomyces hansenii***, an ubiquitous yeast frequently associated with**

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145

*Debaryomyces hansenii* is a halotolerant, non-pathogenic ubiquitous yeast capable of growing in a variety of environments, such as the marine environment and the fish gut. *D. hansenii* has been described as one of the most frequently isolated yeast associated with fish (Table 2). This species is prevalent in seawater, which may explain its high incidence in the fish gut. One study reported the presence of sequences affiliated with *D. hansenii* in hydrothermal sediments [35]. A major biotechnological advantage of *D. hansenii* over *Saccharomyces cerevisiae* is that *D. hansenii* is osmotolerant and can grow in media containing up to 4 M NaCl, whereas the growth of *S. cerevisiae* is restricted to media containing less than 1.7 M NaCl. *D. hansenii* has been extensively studied because of its significant enzymatic potential [52]. For example, several enzymes of biological and biotechnological interest have been identified and characterized in this yeast, including inulinase [53], protease [54], superoxide dismutase (SOD) [55], lipase [56], catalase [57] and α-galactosidase [58-62]. Additionally, β-glucosidase from *D. pseudopolymor‐ phus* [63] and phytase from *D. castellii* [64] has also been identified. The ability of *D. hansenii* to synthesize α-galactosidase has been useful in the treatment of soybean products to reduce raffinose oligosaccharides [59], which are recognized as anti-nutritional factors for mammals and fish. Interestingly, *D. hansenii* SOD has been proposed as a therapeutic anti-inflammatory agent in animal models (Wistar rats) [55]. Because of these characteristics, *D. hansenii* is one of the yeast species that has been selected for complete sequencing [65]. The beneficial effects of

In the past, the identification of yeast species was a tedious and labor-intensive process that was generally based on the morphological and physiological properties of the isolated yeasts. To resolve these problems, the identification of cultivated yeasts is now based on DNA sequence analysis, which is a faster and more accurate process. Sequence-based approaches to the study of yeast biodiversity have resulted in a two-fold increase in the number of described species over the past decade, and a 100-fold increase is predicted in the coming decades. A previous work [8] has studied the phylogenetics of the Saccharomycetales by performing DNA sequence analysis based on five loci: 1) the nuclear small subunit (SSU) ribosomal RNA gene, 2) the D1/D2 region of the nuclear large subunit (LSU) 26S rDNA, 3) the elongation factor 1α gene (EF-1α), and 4) the largest and 5) the second largest subunits of the RNA polymerase II gene (RPB1 and RPB2). Based on the availability of the sequence data in the GenBank and AFTOL databases, the LSU rDNA genes were found to be more reliable for yeast identification. Sequencing the 400-650 bp D1/D2 region or a wider LSU region is extremely useful and distinguishes yeast rapidly at a near-species level. The D1/D2 LSU rDNA region has been sequenced for almost all known yeast, both as an identification tool and as a means for estimating phylogenetic relationships among the Saccharomycetales. A previously study [66] published the sequences of the fungal primers ITS1 and ITS4, which amplify the

**fish and the marine environment**

this yeast species in cultured fish are described below.

**5. Methods to analyze the yeast microbiota**

**Table 2.** Yeast identified in the fish intestine

#### **4.** *Debaryomyces hansenii***, an ubiquitous yeast frequently associated with fish and the marine environment**

*Debaryomyces hansenii* is a halotolerant, non-pathogenic ubiquitous yeast capable of growing in a variety of environments, such as the marine environment and the fish gut. *D. hansenii* has been described as one of the most frequently isolated yeast associated with fish (Table 2). This species is prevalent in seawater, which may explain its high incidence in the fish gut. One study reported the presence of sequences affiliated with *D. hansenii* in hydrothermal sediments [35]. A major biotechnological advantage of *D. hansenii* over *Saccharomyces cerevisiae* is that *D. hansenii* is osmotolerant and can grow in media containing up to 4 M NaCl, whereas the growth of *S. cerevisiae* is restricted to media containing less than 1.7 M NaCl. *D. hansenii* has been extensively studied because of its significant enzymatic potential [52]. For example, several enzymes of biological and biotechnological interest have been identified and characterized in this yeast, including inulinase [53], protease [54], superoxide dismutase (SOD) [55], lipase [56], catalase [57] and α-galactosidase [58-62]. Additionally, β-glucosidase from *D. pseudopolymor‐ phus* [63] and phytase from *D. castellii* [64] has also been identified. The ability of *D. hansenii* to synthesize α-galactosidase has been useful in the treatment of soybean products to reduce raffinose oligosaccharides [59], which are recognized as anti-nutritional factors for mammals and fish. Interestingly, *D. hansenii* SOD has been proposed as a therapeutic anti-inflammatory agent in animal models (Wistar rats) [55]. Because of these characteristics, *D. hansenii* is one of the yeast species that has been selected for complete sequencing [65]. The beneficial effects of this yeast species in cultured fish are described below.

#### **5. Methods to analyze the yeast microbiota**

**Location Fish intestine Identified yeast Identification method Reference**

*Metschnikowia zobellii Kloeckera apiculata Debaryomyces sp.*

*Trichosporon pullulans*

[47].

*Candida Cryptococcus Debaryomyces Rhodotorula Torulopsis*

*D. hansenii Cryptococcus Leucosporidium Rhodotorula rubra R. glutinis*

*Debaryomyces hansenii*

*Debaryomyces hansenii*

*Candida Metschnikowia Sporidiobolus Clavispora Sporobolomyces*

*D. hansenii var. fabryi Trichosporon Rhodotorula mucilaginosa*

identification of cultivated yeast by the methods described by Lodder and Kreger-van Rij [23], Wickerham [24], and van Uden and Farinha [46].

identification of cultivated yeast by the methods described by Lodder and Kreger-van Rij [23] and Kreger-van Rij

Identified by the CBS Yeast Collection [45]

*Rhodotorula* Identified by the CBS Yeast Collection [45]

ITS 1, 5.8S rRNA gene, ITS 2, and partial sequencing of 26S rRNA gene

ITS 1, 5.8S rRNA gene, ITS 2, and partial sequencing of 26S rRNA gene

morphological, physiological and biochemical tests of the isolated yeast

strains according to [50]

[39]

[48]

[49]

[42]

[51]

*Anisotremus*

*affinis littoralis Trachurus symmetricus*

*Herring Haddock Whiting Skate Halibut Flounder Lemon sole*

Sweden farm *Salmo gairdneri S. cerevisiae*

*P. flesus*

*Oncorhynchus mykiss*

*Oncorhynchus mykiss*

*Mugil auratus M. chelo M. capito M. saliens M. cephalus*

Swedish west coast *P. platessa*

Experimental fish farm at

Experimental fish farm at

**Table 2.** Yeast identified in the fish intestine

Sizun (France)

Sizun (France)

Cabras (Oristano, Sardinia)

La Jolla coast *Atherinopis*

144 Sustainable Aquaculture Techniques

Clyde estuary North Sea

> In the past, the identification of yeast species was a tedious and labor-intensive process that was generally based on the morphological and physiological properties of the isolated yeasts. To resolve these problems, the identification of cultivated yeasts is now based on DNA sequence analysis, which is a faster and more accurate process. Sequence-based approaches to the study of yeast biodiversity have resulted in a two-fold increase in the number of described species over the past decade, and a 100-fold increase is predicted in the coming decades. A previous work [8] has studied the phylogenetics of the Saccharomycetales by performing DNA sequence analysis based on five loci: 1) the nuclear small subunit (SSU) ribosomal RNA gene, 2) the D1/D2 region of the nuclear large subunit (LSU) 26S rDNA, 3) the elongation factor 1α gene (EF-1α), and 4) the largest and 5) the second largest subunits of the RNA polymerase II gene (RPB1 and RPB2). Based on the availability of the sequence data in the GenBank and AFTOL databases, the LSU rDNA genes were found to be more reliable for yeast identification. Sequencing the 400-650 bp D1/D2 region or a wider LSU region is extremely useful and distinguishes yeast rapidly at a near-species level. The D1/D2 LSU rDNA region has been sequenced for almost all known yeast, both as an identification tool and as a means for estimating phylogenetic relationships among the Saccharomycetales. A previously study [66] published the sequences of the fungal primers ITS1 and ITS4, which amplify the

internal transcribed spacer (ITS) ITS1-5.8S-ITS2 region that has also been used for yeast identification. Some specialized databases are available on the web in order to help with yeast identification. The Centraal bureau voor Schimmelcultures (CBS) database aids BLAST analysis by allowing pairwise identification of LSU and SSU rDNA, ITS [67] and miscellaneous sequences [68].

cost for one sequence), high-throughput sequencing methods remain an expensive approach. To date, these methods have been applied to the study of the microbial diversity of several communities, especially from human and animal guts [88-93]. Diversity analysis targeting the D1/D2 domain of the 26S rRNA gene or the internal transcribed regions (ITSs) allow yeast species to be distinguished [8], and have recently been applied to the study of some fungal communities [94, 95], and to the identification of some clinical yeast isolates [96-98]. These methods appear to be very suitable for studying the yeast biodiversity in the fish gut. This new knowledge, together with the information available in various databases, will allow both the accurate identification of new yeast isolates and the application of molecular strategies to

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**6. Use of yeast as probiotics in aquaculture: stimulation of the immune and**

The natural occurrence of numerous yeast species in the gastrointestinal tract of healthy fish has been well described, and yeast have been shown to constitute an important part of the microbiota of the fish gut [6]. In addition to *S. cerevisiae*, the halotolerant yeast *D. hansenii* has been considered an excellent probiotic candidate in fish aquaculture. Because, the number of experiences reporting the use of *D. hansenii* is increasing, this allows us to know the capacity of this yeast to enhance growth, survival, and gut maturation and to improve of the immune and antioxidant systems in fish larvae and juveniles. Yeast cells can be a hundred times larger than bacterial cells, which may explain the fact that the introduction of a low yeast population

The effects of probiotics differ greatly depending on the microbial species, isolation source, experimental concentration and finally, the rearing conditions of the fish. However, the improvement of the immune response is one of the most encountered side effects in the host because immune system stimulation or immunomodulation are considered important mechanisms supporting probiosis. Yeast have immunostimulatory properties because they possess components such as β-glucan, mannoproteins, chitin (as a minor component) and

Recent studies have shown the beneficial effect of dietary administered *Saccharomyces cerevi‐ siae* in fish. Yeast supplemented diets stimulate growth, feed efficiency, blood biochemistry, survival rate, and non- specific immune responses in *Uronema marinum*-infected olive flounder (*Paralichthys olivaceus*) [100]. A diet supplemented with *S. cerevisiae* treated with beta-mercap‐ toethanol was better than whole cell yeast and n-3 highly unsaturated fatty acids (HUFA) enriched yeast as an immune system and growth stimulator in juvenile rainbow trout challenged with *Yersinia ruckeri* [101]. Similarly, the dietary administration of the probiotic *S.*

responses and disease resistance of grouper (*Epinephelus coioides*) [102]. Cellular yeast compo‐ nents also stimulate the immune system: an improvement in gut mucus lysozyme activity was observed in European sea bass (*Dicentrarchus labrax*) fed mannan oligosaccharides (MOS)

CFU/kg enhanced the growth, innate immune

characterize the yeast population in the fish gut.

(104

nucleic acids [99].

*cerevisiae* P13 at a minimum level of 105

**antioxidant systems, gut maturation and fish growth**

CFU/g) through feed can induce beneficial effects in the host.

It is generally accepted that in every ecosystem, there are cultivable organisms as well as viable organisms that cannot be cultivated in the laboratory. Less than 1% of the microbial species from the marine environment can be cultivated [69]. Similarly, only approximately 1% of yeast species has been described thus far [70]. In the last decades, several molecular methods have been developed to study natural samples. These methods allow for the identification of microorganisms without isolation and for the determination of the phylogenetic affiliation of community members, thus revealing the enormous extent of microbial diversity. Methods based on the amplification of fragments coding for the 16S rRNA gene have emerged as a powerful tool for studying the bacterial diversity. Denaturing or temperature gradient gel electrophoresis (PCR-DGGE/TTGE) techniques have been introduced into molecular micro‐ bial ecology to determine the genetic diversity of the bacterial communities found in the fish gut [71-76]. These techniques were also applied to characterize the dominant active bacteria in the intestine of different rainbow trout families using RNA that was extracted directly from the samples [77]. One important limitation of PCR-based methods, however, is low sensitivity, which can identify approximately 1% of the total number of species [78]. On the other hand, the use of rRNA gene fingerprinting requires sequencing of the cloned bands to identify the community's members accurately. Sequencing is necessary because the amplicons from different species may migrate to the same positions, or one species may give multiples bands because of multiple gene copies with intra-gene differences [74, 79]. The use of molecular approaches to study yeast communities has been scarce and generally limited to the study of food matrices. Yeast communities have been studied using PCR-DGGE, and amplification of a portion of the 26S rRNA gene of yeast [80-85], while PCR-TTGE has been applied to establish phylogenetic relationships of species of the genus *Saccharomyces* [86].

Recently, high-throughput sequencing methods, such as pyrosequencing, have been shown to be fast and very efficient tools for identifying members of the complex populations. In general, two approaches can be taken: diversity studies based on the sequencing of ribosomal gene (rRNA gene) amplicons, and metagenomic studies where whole-community DNA is subjected to shotgun sequencing [87]. While sequencing ribosomal amplicons is much cheaper because only one gene is being sequenced, the metagenomic approach sequences all of the DNA genes, thus revealing the functions of the microbial community [87]. A useful innovation for these two approaches is to analyze multiple samples at the same time (multiplexing), which can be accomplished using barecoded pyrosequencing or by physically separating the samples in the sequencing plates. In the barecode technique, the sequences in each sample are tagged with a unique barecode using barcoded primers during PCR amplification. The result of these high-throughput sequencing methods is several thousand sequences per sample in just few days, which must necessarily be analyzed using bioinformatics tools. Although the costs associated with these new technologies are less than for the Sanger method (considering the cost for one sequence), high-throughput sequencing methods remain an expensive approach. To date, these methods have been applied to the study of the microbial diversity of several communities, especially from human and animal guts [88-93]. Diversity analysis targeting the D1/D2 domain of the 26S rRNA gene or the internal transcribed regions (ITSs) allow yeast species to be distinguished [8], and have recently been applied to the study of some fungal communities [94, 95], and to the identification of some clinical yeast isolates [96-98]. These methods appear to be very suitable for studying the yeast biodiversity in the fish gut. This new knowledge, together with the information available in various databases, will allow both the accurate identification of new yeast isolates and the application of molecular strategies to characterize the yeast population in the fish gut.

internal transcribed spacer (ITS) ITS1-5.8S-ITS2 region that has also been used for yeast identification. Some specialized databases are available on the web in order to help with yeast identification. The Centraal bureau voor Schimmelcultures (CBS) database aids BLAST analysis by allowing pairwise identification of LSU and SSU rDNA, ITS [67] and miscellaneous

It is generally accepted that in every ecosystem, there are cultivable organisms as well as viable organisms that cannot be cultivated in the laboratory. Less than 1% of the microbial species from the marine environment can be cultivated [69]. Similarly, only approximately 1% of yeast species has been described thus far [70]. In the last decades, several molecular methods have been developed to study natural samples. These methods allow for the identification of microorganisms without isolation and for the determination of the phylogenetic affiliation of community members, thus revealing the enormous extent of microbial diversity. Methods based on the amplification of fragments coding for the 16S rRNA gene have emerged as a powerful tool for studying the bacterial diversity. Denaturing or temperature gradient gel electrophoresis (PCR-DGGE/TTGE) techniques have been introduced into molecular micro‐ bial ecology to determine the genetic diversity of the bacterial communities found in the fish gut [71-76]. These techniques were also applied to characterize the dominant active bacteria in the intestine of different rainbow trout families using RNA that was extracted directly from the samples [77]. One important limitation of PCR-based methods, however, is low sensitivity, which can identify approximately 1% of the total number of species [78]. On the other hand, the use of rRNA gene fingerprinting requires sequencing of the cloned bands to identify the community's members accurately. Sequencing is necessary because the amplicons from different species may migrate to the same positions, or one species may give multiples bands because of multiple gene copies with intra-gene differences [74, 79]. The use of molecular approaches to study yeast communities has been scarce and generally limited to the study of food matrices. Yeast communities have been studied using PCR-DGGE, and amplification of a portion of the 26S rRNA gene of yeast [80-85], while PCR-TTGE has been applied to establish

phylogenetic relationships of species of the genus *Saccharomyces* [86].

Recently, high-throughput sequencing methods, such as pyrosequencing, have been shown to be fast and very efficient tools for identifying members of the complex populations. In general, two approaches can be taken: diversity studies based on the sequencing of ribosomal gene (rRNA gene) amplicons, and metagenomic studies where whole-community DNA is subjected to shotgun sequencing [87]. While sequencing ribosomal amplicons is much cheaper because only one gene is being sequenced, the metagenomic approach sequences all of the DNA genes, thus revealing the functions of the microbial community [87]. A useful innovation for these two approaches is to analyze multiple samples at the same time (multiplexing), which can be accomplished using barecoded pyrosequencing or by physically separating the samples in the sequencing plates. In the barecode technique, the sequences in each sample are tagged with a unique barecode using barcoded primers during PCR amplification. The result of these high-throughput sequencing methods is several thousand sequences per sample in just few days, which must necessarily be analyzed using bioinformatics tools. Although the costs associated with these new technologies are less than for the Sanger method (considering the

sequences [68].

146 Sustainable Aquaculture Techniques

#### **6. Use of yeast as probiotics in aquaculture: stimulation of the immune and antioxidant systems, gut maturation and fish growth**

The natural occurrence of numerous yeast species in the gastrointestinal tract of healthy fish has been well described, and yeast have been shown to constitute an important part of the microbiota of the fish gut [6]. In addition to *S. cerevisiae*, the halotolerant yeast *D. hansenii* has been considered an excellent probiotic candidate in fish aquaculture. Because, the number of experiences reporting the use of *D. hansenii* is increasing, this allows us to know the capacity of this yeast to enhance growth, survival, and gut maturation and to improve of the immune and antioxidant systems in fish larvae and juveniles. Yeast cells can be a hundred times larger than bacterial cells, which may explain the fact that the introduction of a low yeast population (104 CFU/g) through feed can induce beneficial effects in the host.

The effects of probiotics differ greatly depending on the microbial species, isolation source, experimental concentration and finally, the rearing conditions of the fish. However, the improvement of the immune response is one of the most encountered side effects in the host because immune system stimulation or immunomodulation are considered important mechanisms supporting probiosis. Yeast have immunostimulatory properties because they possess components such as β-glucan, mannoproteins, chitin (as a minor component) and nucleic acids [99].

Recent studies have shown the beneficial effect of dietary administered *Saccharomyces cerevi‐ siae* in fish. Yeast supplemented diets stimulate growth, feed efficiency, blood biochemistry, survival rate, and non- specific immune responses in *Uronema marinum*-infected olive flounder (*Paralichthys olivaceus*) [100]. A diet supplemented with *S. cerevisiae* treated with beta-mercap‐ toethanol was better than whole cell yeast and n-3 highly unsaturated fatty acids (HUFA) enriched yeast as an immune system and growth stimulator in juvenile rainbow trout challenged with *Yersinia ruckeri* [101]. Similarly, the dietary administration of the probiotic *S. cerevisiae* P13 at a minimum level of 105 CFU/kg enhanced the growth, innate immune responses and disease resistance of grouper (*Epinephelus coioides*) [102]. Cellular yeast compo‐ nents also stimulate the immune system: an improvement in gut mucus lysozyme activity was observed in European sea bass (*Dicentrarchus labrax*) fed mannan oligosaccharides (MOS) derived from the outer cell wall of a select strain of *S. cerevisiae* (Bio-Mos, Alltech Inc, USA) [103]. Furthermore, channel catfish (*Ictalurus punctatus*) juveniles fed diets supplemented with whole-cell *S. cerevisiae* (Levucell SB20®) or yeast subcomponents such as commercial prepa‐ rations of β-glucan (MacroGard ® and Betagard A ®) had a significantly higher survival rate after *Edwardsiella ictaluri* challenge than did catfish fed with a controlled diet [104].

pancreatic enzymes, a decrease in amylase activity or expression level with the concomitant increase in trypsin or lipase activities characterizes the maturation of the exocrine pancreas.

Use of Yeasts as Probiotics in Fish Aquaculture

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149

Given this previous work, the effect of *D. hansenii*-enriched microparticulated diets were tested in European sea bass larvae. The authors observed an increase in intestinal brush border and pancreatic enzyme activities at 27 dph, indicating an achievement of gut morphology in this larvae stage compared with the control diet lacking yeast [110]. In a second feeding trial, where the introduction of yeast to the microparticulated diet was improved, larvae fed 1% *D. hansenii* matured earlier than fish fed a control diet after day 26, as revealed by lower amylase expression, higher lipase and trypsin expression, and high levels of the BBM enzymes,

In another study [42], two yeast strains: *Saccharomyces cerevisiae* and *S. boulardii*, were evaluated as probiotics for rainbow trout (*Oncorhynchus mykiss*) fry to compare the cross effects of the two rearing conditions, with the intestinal microbiota and the brush border enzyme activities. Intestinal maturation at 10 dph was observed in trout fed *S. boulardii*, and kept in spring water, and these fish displayed the highest ratios of BBM leucine aminopeptidase N *vs*leucine-alanine

Overall, yeast has been added directly to the water, administered as an additive in micropar‐ ticulated diets, and has been used alive to feed live food (rotifers or *Artemia*) as a possible vector to deliver yeast into the gut of fish larvae. Rotifers have been established as the most common live prey to feed larval fish in hatcheries around the world, and baker's yeast (*S. cerevisiae*) is the most common nutrient source for culturing rotifers in addition to algae, emulsified oils or bacteria. Currently, efforts are being made to introduce *D. hansenii* into *Brachionus rotundifor‐ mis* to deliver yeast into the intestine of *L. guttatus* to accelerate digestive maturation [112].

In this regard, the use of Levucell® (*S. boulardii*), Bactocell® (*Pediococcus acidilactici*) and live yeast (*S. cerevisiae*) produced no significant effect on trypsin, lipase, and leucine aminopepti‐ dase activities in California halibut larvae, *Paralichtys californicus*, at 46 dph. Contrary to this, an increase in pepsin and chymotrypsin activity was only observed in fish larvae fed Bactocell® at the final endpoint of the experiment (46 days), suggesting a potential use of these probiotics

In fish aquaculture, the most utilized growth-promoting additives are hormones, antibiotics, ionophores, and salts [114]. The use of probiotics as growth-promoters has been recognized in the last decade with a number of studies related to this topic being published. Probiotics can be used as an alternative to avoid the use of antibiotics for growth promotion, thus eliminating the possibility of generating antibiotic-resistant bacteria in the aquaculture systems. When yeast probiotics have been used in the earliest developmental stages of fish larvae, enhanced growth and survival have been observed. Several yeast species have been documented to enhance growth following artificial colonization, particularly *S. cerevisiae* and *D. hansenii* either alone, or in synergic association with bacteria. One study [115] observed that pollock (*Pollachius pollachius*) larvae grew better when *Artemia nauplii* was first treated with *S. cerevisiae* var. *boulardii* CNCM I-1079 and then with *Pediococcus acidilactici* MA185 M than did larvae fed with one or no probiotic. When *S. cerevisiae* was used alone in feeding trials, it improved feed

peptidase, compared with those fish fed *S. cerevisiae*, and kept in river water.

aminopeptidase N, maltase and alkaline phosphatase [111].

once metamorphosis is completed [113].

As previously described, most published studies have been performed using *S. cerevisiae*; however, promising results have also been obtained with *Debaryomyces hansenii*. A diet supplemented with *D. hansenii* stimulates the immune system of juvenile leopard grouper, *Mycteroperca rosacea*, by increasing IgM and superoxide dismutase (SOD) activity and enhances the resistance of the fish to infection by the dinoflagellate, *Amyloodinium ocellatum* [105]. Additionally, other studies have demonstrated the immune system improvement of *M. rosacea* when the fish were fed for 4 weeks with a compound diet enriched with 1.1% *D. hansenii*. After the 4 weeks, the fish were challenged with the pathogenic bacteria *Aeromonas hydrophila* strain Ah-315, resulting in an increase in IgM levels as well as catalase (CAT) and SOD activities in those fish fed yeast diets. Improvements were also observed at the molecular level, where CAT and HSP70 expression levels were enhanced in *M. rosacea* fed with *D. hansenii*, and challenged with *A. hydrophila* [106].

*D. hansenii* administration to the gilthead seabream (*Sparus aurata* L.) significantly enhances leukocyte peroxidase and respiratory burst activity by week 4 of feeding with yeast. Yeast feeding causes an up-regulation in the expression of the immune-associated genes Hep, IgM, TCR-ß, NCCRP-1, MHC-IIa, CSF-1R, C3, TNF-α and IL-1ß in the head-kidney: C3 expression was only stimulated in the liver, whereas the expression of TCR-ß, TNF-α and C3 was stimulated in the intestine of *S. aurata* [107].

When *D. hansenii* was administered at 1.1% in a compound diet to *D. labrax* larvae, the yeast stimulated the antioxidant status [108]. The group fed with yeast showed lower glutathione peroxidase (GPX) and SOD activity compared to fish fed the control diet, suggesting a possible involvement of superoxide anion retention in fish larvae, which could represent importance to the host to increase cell or tissue responsiveness to growth- and/or differentiation-enhancing factors [109]. The group fed the control diet showed oxidative stress represented by an increase in GPX activity at 48 days post hatching (dph) and gene expression levels for both GPX and SOD at 23 dph.

The ontogeny of the digestive tract of fish larvae has been the subject of many studies in the last decades with the purpose of increasing production rates by reducing the bottlenecks in larviculture. In this sense, the number of reports concerning the use of yeast to enhance gut maturation and digestive enzyme activity in fish are also increasing. The activity and expres‐ sion of digestive enzyme-related genes during fish development provides an excellent marker of digestive development in fish larvae. The enzymes secreted from the pancreas (trypsin, lipase, and amylase) as well as those encountered in the intestinal brush border membranes (BBM) (leucine aminopeptidase N, alkaline phosphatase, maltase, γ-glutamyl-transpeptidase, and the cytosolic leucine-alanine peptidase), are the most common indicators of digestive system maturation in fish larvae. The degree of enterocyte maturation is described by increas‐ ing ratios of activities of BBM enzymes *vs* cytosolic leucine alanine peptidase; in the case of pancreatic enzymes, a decrease in amylase activity or expression level with the concomitant increase in trypsin or lipase activities characterizes the maturation of the exocrine pancreas.

derived from the outer cell wall of a select strain of *S. cerevisiae* (Bio-Mos, Alltech Inc, USA) [103]. Furthermore, channel catfish (*Ictalurus punctatus*) juveniles fed diets supplemented with whole-cell *S. cerevisiae* (Levucell SB20®) or yeast subcomponents such as commercial prepa‐ rations of β-glucan (MacroGard ® and Betagard A ®) had a significantly higher survival rate

As previously described, most published studies have been performed using *S. cerevisiae*; however, promising results have also been obtained with *Debaryomyces hansenii*. A diet supplemented with *D. hansenii* stimulates the immune system of juvenile leopard grouper, *Mycteroperca rosacea*, by increasing IgM and superoxide dismutase (SOD) activity and enhances the resistance of the fish to infection by the dinoflagellate, *Amyloodinium ocellatum* [105]. Additionally, other studies have demonstrated the immune system improvement of *M. rosacea* when the fish were fed for 4 weeks with a compound diet enriched with 1.1% *D. hansenii*. After the 4 weeks, the fish were challenged with the pathogenic bacteria *Aeromonas hydrophila* strain Ah-315, resulting in an increase in IgM levels as well as catalase (CAT) and SOD activities in those fish fed yeast diets. Improvements were also observed at the molecular level, where CAT and HSP70 expression levels were enhanced in *M. rosacea* fed with *D.*

*D. hansenii* administration to the gilthead seabream (*Sparus aurata* L.) significantly enhances leukocyte peroxidase and respiratory burst activity by week 4 of feeding with yeast. Yeast feeding causes an up-regulation in the expression of the immune-associated genes Hep, IgM, TCR-ß, NCCRP-1, MHC-IIa, CSF-1R, C3, TNF-α and IL-1ß in the head-kidney: C3 expression was only stimulated in the liver, whereas the expression of TCR-ß, TNF-α and C3 was

When *D. hansenii* was administered at 1.1% in a compound diet to *D. labrax* larvae, the yeast stimulated the antioxidant status [108]. The group fed with yeast showed lower glutathione peroxidase (GPX) and SOD activity compared to fish fed the control diet, suggesting a possible involvement of superoxide anion retention in fish larvae, which could represent importance to the host to increase cell or tissue responsiveness to growth- and/or differentiation-enhancing factors [109]. The group fed the control diet showed oxidative stress represented by an increase in GPX activity at 48 days post hatching (dph) and gene expression levels for both GPX and

The ontogeny of the digestive tract of fish larvae has been the subject of many studies in the last decades with the purpose of increasing production rates by reducing the bottlenecks in larviculture. In this sense, the number of reports concerning the use of yeast to enhance gut maturation and digestive enzyme activity in fish are also increasing. The activity and expres‐ sion of digestive enzyme-related genes during fish development provides an excellent marker of digestive development in fish larvae. The enzymes secreted from the pancreas (trypsin, lipase, and amylase) as well as those encountered in the intestinal brush border membranes (BBM) (leucine aminopeptidase N, alkaline phosphatase, maltase, γ-glutamyl-transpeptidase, and the cytosolic leucine-alanine peptidase), are the most common indicators of digestive system maturation in fish larvae. The degree of enterocyte maturation is described by increas‐ ing ratios of activities of BBM enzymes *vs* cytosolic leucine alanine peptidase; in the case of

after *Edwardsiella ictaluri* challenge than did catfish fed with a controlled diet [104].

*hansenii*, and challenged with *A. hydrophila* [106].

148 Sustainable Aquaculture Techniques

stimulated in the intestine of *S. aurata* [107].

SOD at 23 dph.

Given this previous work, the effect of *D. hansenii*-enriched microparticulated diets were tested in European sea bass larvae. The authors observed an increase in intestinal brush border and pancreatic enzyme activities at 27 dph, indicating an achievement of gut morphology in this larvae stage compared with the control diet lacking yeast [110]. In a second feeding trial, where the introduction of yeast to the microparticulated diet was improved, larvae fed 1% *D. hansenii* matured earlier than fish fed a control diet after day 26, as revealed by lower amylase expression, higher lipase and trypsin expression, and high levels of the BBM enzymes, aminopeptidase N, maltase and alkaline phosphatase [111].

In another study [42], two yeast strains: *Saccharomyces cerevisiae* and *S. boulardii*, were evaluated as probiotics for rainbow trout (*Oncorhynchus mykiss*) fry to compare the cross effects of the two rearing conditions, with the intestinal microbiota and the brush border enzyme activities. Intestinal maturation at 10 dph was observed in trout fed *S. boulardii*, and kept in spring water, and these fish displayed the highest ratios of BBM leucine aminopeptidase N *vs*leucine-alanine peptidase, compared with those fish fed *S. cerevisiae*, and kept in river water.

Overall, yeast has been added directly to the water, administered as an additive in micropar‐ ticulated diets, and has been used alive to feed live food (rotifers or *Artemia*) as a possible vector to deliver yeast into the gut of fish larvae. Rotifers have been established as the most common live prey to feed larval fish in hatcheries around the world, and baker's yeast (*S. cerevisiae*) is the most common nutrient source for culturing rotifers in addition to algae, emulsified oils or bacteria. Currently, efforts are being made to introduce *D. hansenii* into *Brachionus rotundifor‐ mis* to deliver yeast into the intestine of *L. guttatus* to accelerate digestive maturation [112].

In this regard, the use of Levucell® (*S. boulardii*), Bactocell® (*Pediococcus acidilactici*) and live yeast (*S. cerevisiae*) produced no significant effect on trypsin, lipase, and leucine aminopepti‐ dase activities in California halibut larvae, *Paralichtys californicus*, at 46 dph. Contrary to this, an increase in pepsin and chymotrypsin activity was only observed in fish larvae fed Bactocell® at the final endpoint of the experiment (46 days), suggesting a potential use of these probiotics once metamorphosis is completed [113].

In fish aquaculture, the most utilized growth-promoting additives are hormones, antibiotics, ionophores, and salts [114]. The use of probiotics as growth-promoters has been recognized in the last decade with a number of studies related to this topic being published. Probiotics can be used as an alternative to avoid the use of antibiotics for growth promotion, thus eliminating the possibility of generating antibiotic-resistant bacteria in the aquaculture systems. When yeast probiotics have been used in the earliest developmental stages of fish larvae, enhanced growth and survival have been observed. Several yeast species have been documented to enhance growth following artificial colonization, particularly *S. cerevisiae* and *D. hansenii* either alone, or in synergic association with bacteria. One study [115] observed that pollock (*Pollachius pollachius*) larvae grew better when *Artemia nauplii* was first treated with *S. cerevisiae* var. *boulardii* CNCM I-1079 and then with *Pediococcus acidilactici* MA185 M than did larvae fed with one or no probiotic. When *S. cerevisiae* was used alone in feeding trials, it improved feed efficiency in Israeli carp and Nile tilapia [116, 117]. In addition to growth enhancement, an improvement in the conformation of the larvae was also observed in *D. labrax* fed with *D. hansenii*; a reduction in spinal deformity from 13.6% to 1.1% in fish fed yeast *vs* the control group was observed [111].

**7. Yeast β-glucans: Structure, mechanisms of action and its application as**

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The glucose polymer β-glucan is a major structural component of the cell wall of some plants (such as the cereals oat and barley), seaweeds, and the outer cell wall of bacteria, fungi and yeast. Different β-glucans vary in structure, size, branching frequency, structural modifica‐ tions, conformation and solubility, which may influence their physiological functions. Glucose molecules, in all β-glucan polymers, are linked together by a β-(1→3) linear β-glycosidic chain core, but differ in their length and branching structures. For example, the β-glucans from oat and barley are linear with β-(1→4) linkages, and shorter stretches of β-(1→3) linkages, while the structure of yeast β-glucans is composed of β-(1→3)-D-glucans with β-(1→6)-glycosidic linked branches, which apparently corresponds to the most active form of β-glucan. The relationship between structure and biological activity is controversial, but it appears that large molecular weight β-glucans are the most active compared with small β-glucans below 5,000-10,000 Da that are generally inactive. The solubility of β-glucans also influences their

The consumption of β-glucans has been associated with beneficial health effects in humans, including anticancer properties [123], metabolic syndrome prevention [124, 125], cholesterollowering effects [126], anti-atherogenic properties [127] and skin health promotion [128]. *In vitro* and *in vivo* studies in animals and humans show that the β-glucans derived from fungi and yeasts in particular, have interesting immune modulating properties [129-132]. This immune stimulation can be achieved when β-glucans are administered by a parenteral or an

Despite their structural versatility, β-glucans are highly conserved structural components and belong to a group of physiologically active compounds called biological response modifiers [133]. Because of their large molecular weight, they cannot penetrate the cell membrane and therefore they must interact with cell-surface receptors; it has been shown that β-glucans are recognized by several receptors found on neutrophils, macrophages, and dendritic cells [129, 134]. Additionally, β-glucans belong to the group of non-self-molecules called pathogenassociated molecular patterns (PAMPS), which are recognized by pattern recognition receptors (PRRs) on the cell surface [135]. The principal β-glucans PRRs are dectin-1 and the toll-like receptors (TLRs), but other receptors are suggested to be involved, such as scavenger receptors, complement receptor 3, and lactosylceramide [136, 137]. Dectin-1 specifically recognizes β- (1→3)(1→6) glucans from fungi, plants, and bacteria [138], but it is not reactive toward β-(1→4) glucans or α-mannan [139]. The stimulation of dectin-1 activates the innate immune response, ROS and inflammatory cytokine production [140] through the activation of phospholipase C [141], the PI3K/Akt pathway, MAPK, NFAT, and NF-κB [142]. The interaction of β-glucans with TLRs results in activation of NF-κB and MAPK signaling [143]. Zymosan (β-glucans from the yeast *Saccharomyces cerevisiae*) binds to TLR2 and TLR4 (as well as dectin-1) found on macrophages, leading to an increase in cytokine production, such as TNF-α and IL-12, through the NF-κB pathway [143]. The β-glucan (β-(1→3) (1→6)-D-glucan) from *Aureobasidium pullulans* ADK-34 stimulates intestinal Peyer's patch cells both *in vitro* and *in vivo* as reflected

biological activity, with soluble β-glucans appearing to be more active.

**immunostimulant in aquaculture**

oral (dietary) route.

The use of probiotics in well-established fish industry is easier of because the existence of many individuals to experiment upon (*S. salar*, *D. labrax*, *S. aurata*, *S. maximus*, *O. mykiss*, etc). Nevertheless, it is advisable to use probiotics in species with the potential for exploitation to optimize the results for growth, survival and health. In this context, several studies have been performed in fish species with emerging aquaculture potential to contribute to the establish‐ ment of a continuous production line for experimental purposes. A commercial preparation of live yeast (*S. cerevisiae* and *Lactobacillus coagulans*) was tested on Indian carp fry, *Labeo rohita,* with no conclusive effects on growth [118]. *D. hansenii* has been observed to function as a growth promoter in *Mycteroperca rosacea* juveniles because after 4 weeks of continuous feeding, a weight gain (33%) and condition factor were observed in those fish fed a micropar‐ ticulated diet enriched with yeast, compared with those fish fed without yeast [106]. In spotted sand bass larvae, *Paralabrax maculatofasciatus*, the highest survival (13.0%) was obtained with *D. hansenii* enriched microparticulated diets, but no effects on growth were observed with the use of probiotics [119].

At present, much of the existing evidence indicates that yeast promotes growth, and survival because of gut maturation, conformation of the larvae, and stimulation of the immune system by a possible involvement of endoluminal yeast-secreted polyamines in the host. As was earlier demonstrated, *D. hansenii* produces more polyamines (putrescine, spermidine and spermine) than *S. cerevisiae* and *S. boulardii* [111]. Polyamines participate in several physiological proc‐ esses such as cell proliferation and differentiation and appear to have a broad influence on digestive tract maturation. In particular, the roles of dietary spermine and spermidine have been previously described [120]. These molecules enter enterocytes, where they induce a hormonal cascade that affects organs such as the pancreas and liver. Recently, the production of polyamines in 13 strains of *D. hansenii*, isolated from different sources, using high-pressure liquid chromatography (HPLC) has been reported [121]. In this study, they found that the L2, and CBS004 strains isolated from citrus fruit and marine water, respectively, were the main polyamine-secreting yeasts. Later, L2 strain was shown to have a probiotic effect because it enhanced the immune status, and intestinal function of gilthead seabream, *Sparus aurata* [122].

Finally, evidence of polyamine contribution to larviculture performance was reported when the spotted sand bass larvae, *P. maculatofasciatus* fed with *D. hansenii* with un-inhibited ornithine decarboxylase (ODC) activity had precocious digestive maturation compared to those larvae fed ODC-inhibited (with α-difluoromethylornithine (DFMO)) yeast [119]. Ornithine decarboxylase, which catalyzes the formation of putrescine, is the rate-limiting enzyme in the biosynthesis of polyamines in cells.

#### **7. Yeast β-glucans: Structure, mechanisms of action and its application as immunostimulant in aquaculture**

efficiency in Israeli carp and Nile tilapia [116, 117]. In addition to growth enhancement, an improvement in the conformation of the larvae was also observed in *D. labrax* fed with *D. hansenii*; a reduction in spinal deformity from 13.6% to 1.1% in fish fed yeast *vs* the control

The use of probiotics in well-established fish industry is easier of because the existence of many individuals to experiment upon (*S. salar*, *D. labrax*, *S. aurata*, *S. maximus*, *O. mykiss*, etc). Nevertheless, it is advisable to use probiotics in species with the potential for exploitation to optimize the results for growth, survival and health. In this context, several studies have been performed in fish species with emerging aquaculture potential to contribute to the establish‐ ment of a continuous production line for experimental purposes. A commercial preparation of live yeast (*S. cerevisiae* and *Lactobacillus coagulans*) was tested on Indian carp fry, *Labeo rohita,* with no conclusive effects on growth [118]. *D. hansenii* has been observed to function as a growth promoter in *Mycteroperca rosacea* juveniles because after 4 weeks of continuous feeding, a weight gain (33%) and condition factor were observed in those fish fed a micropar‐ ticulated diet enriched with yeast, compared with those fish fed without yeast [106]. In spotted sand bass larvae, *Paralabrax maculatofasciatus*, the highest survival (13.0%) was obtained with *D. hansenii* enriched microparticulated diets, but no effects on growth were observed with the

At present, much of the existing evidence indicates that yeast promotes growth, and survival because of gut maturation, conformation of the larvae, and stimulation of the immune system by a possible involvement of endoluminal yeast-secreted polyamines in the host. As was earlier demonstrated, *D. hansenii* produces more polyamines (putrescine, spermidine and spermine) than *S. cerevisiae* and *S. boulardii* [111]. Polyamines participate in several physiological proc‐ esses such as cell proliferation and differentiation and appear to have a broad influence on digestive tract maturation. In particular, the roles of dietary spermine and spermidine have been previously described [120]. These molecules enter enterocytes, where they induce a hormonal cascade that affects organs such as the pancreas and liver. Recently, the production of polyamines in 13 strains of *D. hansenii*, isolated from different sources, using high-pressure liquid chromatography (HPLC) has been reported [121]. In this study, they found that the L2, and CBS004 strains isolated from citrus fruit and marine water, respectively, were the main polyamine-secreting yeasts. Later, L2 strain was shown to have a probiotic effect because it enhanced the immune status, and intestinal function of gilthead seabream, *Sparus aurata* [122].

Finally, evidence of polyamine contribution to larviculture performance was reported when the spotted sand bass larvae, *P. maculatofasciatus* fed with *D. hansenii* with un-inhibited ornithine decarboxylase (ODC) activity had precocious digestive maturation compared to those larvae fed ODC-inhibited (with α-difluoromethylornithine (DFMO)) yeast [119]. Ornithine decarboxylase, which catalyzes the formation of putrescine, is the rate-limiting

enzyme in the biosynthesis of polyamines in cells.

group was observed [111].

150 Sustainable Aquaculture Techniques

use of probiotics [119].

The glucose polymer β-glucan is a major structural component of the cell wall of some plants (such as the cereals oat and barley), seaweeds, and the outer cell wall of bacteria, fungi and yeast. Different β-glucans vary in structure, size, branching frequency, structural modifica‐ tions, conformation and solubility, which may influence their physiological functions. Glucose molecules, in all β-glucan polymers, are linked together by a β-(1→3) linear β-glycosidic chain core, but differ in their length and branching structures. For example, the β-glucans from oat and barley are linear with β-(1→4) linkages, and shorter stretches of β-(1→3) linkages, while the structure of yeast β-glucans is composed of β-(1→3)-D-glucans with β-(1→6)-glycosidic linked branches, which apparently corresponds to the most active form of β-glucan. The relationship between structure and biological activity is controversial, but it appears that large molecular weight β-glucans are the most active compared with small β-glucans below 5,000-10,000 Da that are generally inactive. The solubility of β-glucans also influences their biological activity, with soluble β-glucans appearing to be more active.

The consumption of β-glucans has been associated with beneficial health effects in humans, including anticancer properties [123], metabolic syndrome prevention [124, 125], cholesterollowering effects [126], anti-atherogenic properties [127] and skin health promotion [128]. *In vitro* and *in vivo* studies in animals and humans show that the β-glucans derived from fungi and yeasts in particular, have interesting immune modulating properties [129-132]. This immune stimulation can be achieved when β-glucans are administered by a parenteral or an oral (dietary) route.

Despite their structural versatility, β-glucans are highly conserved structural components and belong to a group of physiologically active compounds called biological response modifiers [133]. Because of their large molecular weight, they cannot penetrate the cell membrane and therefore they must interact with cell-surface receptors; it has been shown that β-glucans are recognized by several receptors found on neutrophils, macrophages, and dendritic cells [129, 134]. Additionally, β-glucans belong to the group of non-self-molecules called pathogenassociated molecular patterns (PAMPS), which are recognized by pattern recognition receptors (PRRs) on the cell surface [135]. The principal β-glucans PRRs are dectin-1 and the toll-like receptors (TLRs), but other receptors are suggested to be involved, such as scavenger receptors, complement receptor 3, and lactosylceramide [136, 137]. Dectin-1 specifically recognizes β- (1→3)(1→6) glucans from fungi, plants, and bacteria [138], but it is not reactive toward β-(1→4) glucans or α-mannan [139]. The stimulation of dectin-1 activates the innate immune response, ROS and inflammatory cytokine production [140] through the activation of phospholipase C [141], the PI3K/Akt pathway, MAPK, NFAT, and NF-κB [142]. The interaction of β-glucans with TLRs results in activation of NF-κB and MAPK signaling [143]. Zymosan (β-glucans from the yeast *Saccharomyces cerevisiae*) binds to TLR2 and TLR4 (as well as dectin-1) found on macrophages, leading to an increase in cytokine production, such as TNF-α and IL-12, through the NF-κB pathway [143]. The β-glucan (β-(1→3) (1→6)-D-glucan) from *Aureobasidium pullulans* ADK-34 stimulates intestinal Peyer's patch cells both *in vitro* and *in vivo* as reflected by an increase in IL-5, IL-6, and IgA [129]. The interaction of β-glucans with specific receptors on macrophages and dendritic cells can induce the production of several cytokines, which in turn activate other immune cells such as B and T cells, thus activating the systemic immune response.

Zebrafish (*Danio rerio*) have been suggested as a model aquacultured fish, especially for genetic [150], nutritional and comparative growth studies [151]. Furthermore, zebrafish have been suggested as a model for pathogen studies in finfish [152]. Yeast β-glucans have also been evaluated in the zebrafish (*Danio rerio*) model with promising results [153]. In the study, a 5 mg/ml β-glucan preparation derived from *S. cerevisiae* was injected intra-peritoneally into adult zebrafish, leading to a significant reduction in mortality after challenge with *Aeromonas hydrophila*. In zebrafish treated with β-glucan, the ability of kidney cells to kill *A. hydrophila* was enhanced. Moreover, the myelomonocytic cell population in the kidney at 6 h postchallenge with *A. hydrophila* was increased. The β-glucan also appears to modulate the

Recently, the effect of β-glucan (derived from yeast, Fibosel® (Lallemand) on the growth performance and antioxidant enzyme activity in red snapper (*Lutjanus peru*), before and after exposure to lipopolysaccharides (LPS), was investigated. The fish were fed commercial diets with 0.0%, 0.1% and 0.2% Fibosel® for 6 weeks, after which, LPS was injected intra-peritoneal‐ ly. The results showed a significant increase in growth performance after 6 weeks of β-glucan feeding;theSODactivitywasalsosignificantlyhigherindietscontaining0.1%β-glucaninweeks 4 and 6 with respect to the control group. At 72 h after injection of LPS, samples showed a significantincrease in CAT activity in fish fed diets supplemented with 0.2% β-glucan and SOD activity increased under diets containing 0.1% and 0.2% β-glucan compared to controls [154]. To explain the enhancedgrowth,the authors suggestedthat some bacterialpopulations modify the host's digestive enzyme activity through their ability to produce and liberate exogenous digestive enzymes, as was previously observed [155]. Other authors reported that polysacchar‐

ides used as prebiotics can stimulate the growth of beneficial microbiota in fish [156].

Betagard A® oral Nile tilapia (*Oreochromis niloticus*) Immune

*crocea*)

*Saccharomyces cerevisiae* oral Large yellow croaker (*Pseudosciaena*

**route Fish species Biological effects Ref.**

Oral Nile tilapia (*Oreochromis niloticus*) no effect [157]

oral Nile tilapia (*Oreochromis niloticus*) Immune

oral Channel catfish (*Ictalurus punctatus*) Immune

oral Fathead minnows (*Pimephales promelas*) Immune

oral Channel catfish (*Ictalurus punctatus*) improvement in

modulation

Use of Yeasts as Probiotics in Fish Aquaculture

http://dx.doi.org/10.5772/57196

153

modulation

modulation

modulation

Immune modulation growth enhancement

stress resistance

[158]

[159]

[160]

[104]

[161]

[162]

expression of IFN-γ and chemokines in the kidney [153].

**Administration**

**β-glucan sources**

Inc.)

β-glucan (Aqua-In-Tech,

*S. cerevisiae* (Hang Zhou Bio-Technology Co)

MacroGard® Betagard A®

MacroGard® Betagard A®

MacroGard® Zymosan

Yeast β-glucans have been applied in aquaculture to modulate the innate immune system of fish to improve their survival until adaptive immune responses are sufficiently developed to mount effective responses against pathogens [144, 145]. If the β-glucans are administered as feed additives, they can exert their primary effects at the intestinal level through the induction of cytokines, which in turn affect the systemic immune response in fish. Different sources of β-glucans have been evaluated, although the most frequent sources are those obtained from the baker's yeast, *Saccharomyces cerevisiae.* Some commercial preparations of β-glucan (Mac‐ roGard ®, Betagard A ®, EcoActivaTM, Nutriferm TM, BG, Fibosel®, etc) are available on the market that can be used in aquaculture. Many studies have explored the *in vitro* response of the macrophage to β-glucan [146, 147], while other studies have addressed the *in vivo* effect of β-glucans in different fish species (Table 3). The β-glucans from several sources have been administered to fish via the oral or intra-peritoneal route with different effects. Many studies have shown the immune effects of β-glucans specifically on antibody production, expression of immune system genes, survival, resistance to infectious diseases, and improvement in stress resistance. The growth enhancement of fish has also been observed as another beneficial effect of β-glucans (Table 3).

Recently, juvenile channel catfish (*Ictalurus punctatus*) fed diets supplemented with wholecell *Saccharomyces cerevisiae* (Levucell SB20®) or yeast subcomponents such as commercial preparations of β-glucan (MacroGard ® and Betagard A ®) had a significantly higher survival rate after challenge with *Edwardsiella ictaluri* than did catfish fed with a control diet [104]. Atlantic cod (*Gadus morhua* L.) were fed for 5 weeks with a purified β-glucan product [148], after which the fish were bath-challenged with the bacterial pathogen, *Vibrio anguillarum*. The transcription of selected cytokines (proinflammatory: IL1-β, IL-8, IFNγ; anti-inflammatory: IL-10) in different intestinal segments was analyzed using qPCR, and the β-glucan product was found to have a differential effect on the expression of the cytokine genes. In the anterior intestine and rectum, the β-glucan significantly elevated the expression of IL-1β when challenged with *V. anguillarum*. Moreover, an effect on the anti-inflammatory cytokine IL-10 was also visible in the rectum after the pathogen challenge. The differential responses of cytokines in the intestine of fish upon exposure to *V. anguillarum* suggests that β-glucans impact the ability of Atlantic cod to respond to the pathogen [148].

In another recently study, different concentrations of the yeast β-glucan preparation Macro‐ Gard ® (0.1%, 1% or 2%) were orally administered to mirror carp (*Cyprinus carpio* L.) for 8 weeks [149]. Fish fed diets containing 1% and 2% MacroGard® showed significant improve‐ ments in weight gain, specific growth rate and feed conversion ratio compared to fish fed both the control and the 0.1% MacroGard® containing diet. At the end of the experiment, the haematocrit value was significantly elevated in fish fed the 2% MacroGard® diet, compared to the control fed fish, with the blood monocyte fraction significantly higher in fish fed the 1% and 2% MacroGard® diets [149].

Zebrafish (*Danio rerio*) have been suggested as a model aquacultured fish, especially for genetic [150], nutritional and comparative growth studies [151]. Furthermore, zebrafish have been suggested as a model for pathogen studies in finfish [152]. Yeast β-glucans have also been evaluated in the zebrafish (*Danio rerio*) model with promising results [153]. In the study, a 5 mg/ml β-glucan preparation derived from *S. cerevisiae* was injected intra-peritoneally into adult zebrafish, leading to a significant reduction in mortality after challenge with *Aeromonas hydrophila*. In zebrafish treated with β-glucan, the ability of kidney cells to kill *A. hydrophila* was enhanced. Moreover, the myelomonocytic cell population in the kidney at 6 h postchallenge with *A. hydrophila* was increased. The β-glucan also appears to modulate the expression of IFN-γ and chemokines in the kidney [153].

by an increase in IL-5, IL-6, and IgA [129]. The interaction of β-glucans with specific receptors on macrophages and dendritic cells can induce the production of several cytokines, which in turn activate other immune cells such as B and T cells, thus activating the systemic immune

Yeast β-glucans have been applied in aquaculture to modulate the innate immune system of fish to improve their survival until adaptive immune responses are sufficiently developed to mount effective responses against pathogens [144, 145]. If the β-glucans are administered as feed additives, they can exert their primary effects at the intestinal level through the induction of cytokines, which in turn affect the systemic immune response in fish. Different sources of β-glucans have been evaluated, although the most frequent sources are those obtained from the baker's yeast, *Saccharomyces cerevisiae.* Some commercial preparations of β-glucan (Mac‐ roGard ®, Betagard A ®, EcoActivaTM, Nutriferm TM, BG, Fibosel®, etc) are available on the market that can be used in aquaculture. Many studies have explored the *in vitro* response of the macrophage to β-glucan [146, 147], while other studies have addressed the *in vivo* effect of β-glucans in different fish species (Table 3). The β-glucans from several sources have been administered to fish via the oral or intra-peritoneal route with different effects. Many studies have shown the immune effects of β-glucans specifically on antibody production, expression of immune system genes, survival, resistance to infectious diseases, and improvement in stress resistance. The growth enhancement of fish has also been observed as another beneficial effect

Recently, juvenile channel catfish (*Ictalurus punctatus*) fed diets supplemented with wholecell *Saccharomyces cerevisiae* (Levucell SB20®) or yeast subcomponents such as commercial preparations of β-glucan (MacroGard ® and Betagard A ®) had a significantly higher survival rate after challenge with *Edwardsiella ictaluri* than did catfish fed with a control diet [104]. Atlantic cod (*Gadus morhua* L.) were fed for 5 weeks with a purified β-glucan product [148], after which the fish were bath-challenged with the bacterial pathogen, *Vibrio anguillarum*. The transcription of selected cytokines (proinflammatory: IL1-β, IL-8, IFNγ; anti-inflammatory: IL-10) in different intestinal segments was analyzed using qPCR, and the β-glucan product was found to have a differential effect on the expression of the cytokine genes. In the anterior intestine and rectum, the β-glucan significantly elevated the expression of IL-1β when challenged with *V. anguillarum*. Moreover, an effect on the anti-inflammatory cytokine IL-10 was also visible in the rectum after the pathogen challenge. The differential responses of cytokines in the intestine of fish upon exposure to *V. anguillarum* suggests that β-glucans

In another recently study, different concentrations of the yeast β-glucan preparation Macro‐ Gard ® (0.1%, 1% or 2%) were orally administered to mirror carp (*Cyprinus carpio* L.) for 8 weeks [149]. Fish fed diets containing 1% and 2% MacroGard® showed significant improve‐ ments in weight gain, specific growth rate and feed conversion ratio compared to fish fed both the control and the 0.1% MacroGard® containing diet. At the end of the experiment, the haematocrit value was significantly elevated in fish fed the 2% MacroGard® diet, compared to the control fed fish, with the blood monocyte fraction significantly higher in fish fed the 1%

impact the ability of Atlantic cod to respond to the pathogen [148].

response.

152 Sustainable Aquaculture Techniques

of β-glucans (Table 3).

and 2% MacroGard® diets [149].

Recently, the effect of β-glucan (derived from yeast, Fibosel® (Lallemand) on the growth performance and antioxidant enzyme activity in red snapper (*Lutjanus peru*), before and after exposure to lipopolysaccharides (LPS), was investigated. The fish were fed commercial diets with 0.0%, 0.1% and 0.2% Fibosel® for 6 weeks, after which, LPS was injected intra-peritoneal‐ ly. The results showed a significant increase in growth performance after 6 weeks of β-glucan feeding;theSODactivitywasalsosignificantlyhigherindietscontaining0.1%β-glucaninweeks 4 and 6 with respect to the control group. At 72 h after injection of LPS, samples showed a significantincrease in CAT activity in fish fed diets supplemented with 0.2% β-glucan and SOD activity increased under diets containing 0.1% and 0.2% β-glucan compared to controls [154]. To explain the enhancedgrowth,the authors suggestedthat some bacterialpopulations modify the host's digestive enzyme activity through their ability to produce and liberate exogenous digestive enzymes, as was previously observed [155]. Other authors reported that polysacchar‐ ides used as prebiotics can stimulate the growth of beneficial microbiota in fish [156].



**β-glucan sources**

oyster mushroom (*Pleurotus* 

fl*orida*)

Fibosel® (Lallemand) *Saccharomyces cerevisiae*

\*GY: β-1,3-glucan from baker's yeast \*\*GB: β -1,3-glucan from barley

**Table 3.** Biological effect of different β-glucans in fish

*Saccharomyces cerevisiae* intra-peritoneal

*Saccharomyces cerevisiae* intra-peritoneal

oral

oral

**Administration**

*Saccharomyces cerevisiae* intra-peritoneal Carp (*Cyprinus carpio*) Immune

*Saccharomyces cerevisiae* oral Carp (*Cyprinus carpio*) Immune

MacroGard® oral Carp (*Cyprinus carpio*) Immune

MacroGard® oral Carp (*Cyprinus carpio*) apoptosis

MacroGard® oral Carp (*Cyprinus carpio*) Growth

*Saccharomyces cerevisiae* intra-peritoneal Zebrafish (*Danio rerio*) Immune

MacroGard® oral Sea bass (*Dicentrarchus labrax*) Immune

MacroGard® oral Sea bass (*Dicentrarchus labrax*) Immune

MacroGard® oral European sea bass (*Dicentrarchus labrax*) Immune

EcoActivaTM oral Pink snapper (*Pagrus auratus*) growth

*Poria cocos* oral *Ctenopharyngodon idella* Immune

intra-peritoneal Catla (*Catla catla*) Immune

oral *Lutjanus peru* growth

**route Fish species Biological effects Ref.**

Rainbow trout (*Oncorhynchus mykiss*) Immune

Carp (*Cyprinus carpio*) Immune

modulation

Use of Yeasts as Probiotics in Fish Aquaculture

http://dx.doi.org/10.5772/57196

modulation

modulation

modulation

modulation

modulation

enhancement

modulation

modulation

modulation

modulation

enhancement Immune modulation

modulation

modulation

enhancement Immune modulation

[179]

155

[180, 181]

[182]

[183]

[184]

[185]

[186]

[153]

[187]

[188]

[189]

[190]

[191]

[192]


\*\*GB: β -1,3-glucan from barley

**β-glucan sources**

154 Sustainable Aquaculture Techniques

GY (Sigma)\* GB (Sigma)\*\*

marine diatom *Chaetoceros mülleri*

Yeast cell wall preparation from *Saccharomyces cerevisiae*

(Nutriferm TM)

Glucan (Taito Co.Ltd., Tokyo, Japan)

β(1,3)-D-glucan (laminaran) from *Laminaria hyperborea*

β(1,3)-D-glucan (laminaran) from *Laminaria hyperborea*

glucan: BG (Biorigin Europe, Oslo, Norway)

β-1,3/1,6

**Administration**

*Saccharomyces cerevisiae* intra-peritoneal Atlantic salmon (*Salmo salar* L) Immune

Barley intra-peritoneal Rohu (*Labeo rohita)* Immune

β-glucan (Sigma) oral Rohu (*Labeo rohita)* Immune

β-1,3 glucan (Sigma) oral Rohu (*Labeo rohita*) Immune

β-1,3 glucan (Sigma) oral Rohu (*Labeo rohita*) Immune

β-1,3 glucan (Sigma) oral Asian catfish (*Clarias batrachus*) Immune

MacroGard® oral Rainbow trout (*Oncorhynchus mykiss*) Immune

MacroGard® oral Rainbow trout (*Oncorhynchus mykiss*) Immune

Barley oral Rainbow trout (*Oncorhynchus mykiss*) Immune

*Saccharomyces cerevisiae* oral Atlantic salmon (*Salmo salar* L) Enhancement of

**route Fish species Biological effects Ref.**

oral Atlantic cod (*Gadus morhua* L.) Survival and growth

oral Atlantic cod (*Gadus morhua* L.) Immune

oral Rohu (*Labeo rohita*) Immune

oral Rainbow trout (*Oncorhynchus mykiss*) Decrease in

intra-peritoneal Rainbow trout (*Oncorhynchus mykiss*) Immune

inmersion Rainbow trout (*Oncorhynchus mykiss*) Immune

modulation

salmon lice resistance

enhancement

modulation

modulation

modulation

modulation

modulation

modulation

modulation

modulation

modulation

modulation

modulation

modulation

plasmatic cortisol

[163]

[164]

[165]

[148]

[166]

[167]

[168]

[169]

[170]

[171, 172]

[173]

[174]

[175]

[176]

[177]

[178]

**Table 3.** Biological effect of different β-glucans in fish

#### **8. Conclusions**

It is interesting to note that even after several decades of investigation, the potential of yeast, especially those of marine origin, has not yet been fully exploited. Yeasts can be part of the gut microbiota of wild and cultivated fish; however, more information derived using molecular approaches, is needed regarding the yeast composition in fish. Although much has been reported on the molecular aspects of yeasts, the exploration of the complete yeast community through the analysis of yeast DNA or RNA is lacking. The application of such methodologies will provide us with an overview of the non-cultivated yeasts, which could play a major role in the fish host. Different enzymes can be synthesized by yeast that have biotechnological potential, but the direct contribution of this potential to fish nutrition must be explored. In contrast, several publications confirm the beneficial probiotic effects of yeast in aquaculture, but the majority of these studies are focused on two species: *S. cerevisiae* and *D. hansenii*. The identification of new yeast species/strains from other cultured fish species is required to explore new beneficial properties to improve fish health and nutrition for a more sustainable aquaculture.

[2] Rumsey GL, Siwicki AK, Anderson DP, Bowser PR. Effect of soybean protein on se‐ rological response, non-specific defense mechanisms, growth, and protein utilization

Use of Yeasts as Probiotics in Fish Aquaculture

http://dx.doi.org/10.5772/57196

157

[3] Van den Ing T, Olli JJ, Krogdahl A. Effects of soybean-containing diets on the proxi‐ mal and distal intestine in Atlantic salmon (*Salmo salar*): a morphological study.

[4] Sealey WM, Barrows FT, Smith CE, Overturf K, LaPatra SE. Soybean meal level and probiotics in first feeding fry diets alter the ability of rainbow trout *Oncorhynchus my‐ kiss* to utilize high levels of soybean meal during grow-out. Aquaculture

[5] Rawls JF, Samuel BS, Gordon JI. Gnotobiotic zebrafish reveal evolutionarily con‐ served responses to the gut microbiota. P Natl Acad Sci USA 2004;101(13) 4596-601.

[6] Gatesoupe FJ. Live yeasts in the gut: Natural occurrence, dietary introduction, and their effects on fish health and development. Aquaculture 2007;267(1-4) 20-30.

[8] Suh SO, Blackwell M, Kurtzman CP, Lachance MA. Phylogenetics of Saccharomyce‐

[9] Scorzetti G, Fell JW, Fonseca A, Statzell-Tallman A. Systematics of basidiomycetous yeasts: a comparison of large subunit D1/D2 and internal transcribed spacer rDNA

[10] Lachance MA, Starmer WT. Ecology and yeasts. In: Kurtzman CP, Fell JW, editors.

[11] Raghukumar S. The Role of Fungi in Marine Detrital Processes. In: Ramaiah N, edi‐ tor. Marine Microbiology: Facets & Opportunities: National Institute of Oceanogra‐

[12] Rhishipal R, Philip R. Selection of marine yeasts for the generation of single cell pro‐

[13] Rocha LL, Cordeiro RDA, Cavalcante RM, do Nascimento RF, Martins SCS, Santaella ST, et al. Isolation and characterization of phenol-degrading yeasts from an oil refin‐

[14] Burgaud G, Arzur D, Durand L, Cambon-Bonavita MA, Barbier G. Marine culturable yeasts in deep-sea hydrothermal vents: species richness and association with fauna.

[15] Chi ZM, Chi Z, Zhang T, Liu GL, Li J, Wang XH. Production, characterization and gene cloning of the extracellular enzymes from the marine-derived yeasts and their

The Yeasts, a Taxonomic Study. Amsterdam: Elsevier; 1998. p. 21-30.

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[7] Kurtzman CP. Molecular taxonomy of the yeasts. Yeast 1994;10(13) 1727-40.

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#### **Acknowledgements**

This work has been supported by FONDECYT grant 11110414 from CONICYT-Chile. D. Tovar, thanks to the Mexican Council of Science and Technology (CONACYT) for the grant CB-2010 157763.

#### **Author details**

Paola Navarrete1\* and Dariel Tovar-Ramírez2

\*Address all correspondence to: paolanavarretew@gmail.com

1 Biotechnology Laboratory, Institute of Nutrition and Food Technology (INTA), University of Chile, Santiago, Chile

2 Physiology and Functional Genomics Laboratory, The Center for Biological Research of NW (CIBNOR), La Paz, B.C.S., México

#### **References**

[1] FAO. http://www.fao.org/fishery/aquaculture/en (accessed 5 April 2013)

[2] Rumsey GL, Siwicki AK, Anderson DP, Bowser PR. Effect of soybean protein on se‐ rological response, non-specific defense mechanisms, growth, and protein utilization in rainbow trout. Vet Immunol Immunopath 1994;41(3–4) 323-39.

**8. Conclusions**

156 Sustainable Aquaculture Techniques

aquaculture.

157763.

**Author details**

of Chile, Santiago, Chile

**References**

Paola Navarrete1\* and Dariel Tovar-Ramírez2

NW (CIBNOR), La Paz, B.C.S., México

\*Address all correspondence to: paolanavarretew@gmail.com

**Acknowledgements**

It is interesting to note that even after several decades of investigation, the potential of yeast, especially those of marine origin, has not yet been fully exploited. Yeasts can be part of the gut microbiota of wild and cultivated fish; however, more information derived using molecular approaches, is needed regarding the yeast composition in fish. Although much has been reported on the molecular aspects of yeasts, the exploration of the complete yeast community through the analysis of yeast DNA or RNA is lacking. The application of such methodologies will provide us with an overview of the non-cultivated yeasts, which could play a major role in the fish host. Different enzymes can be synthesized by yeast that have biotechnological potential, but the direct contribution of this potential to fish nutrition must be explored. In contrast, several publications confirm the beneficial probiotic effects of yeast in aquaculture, but the majority of these studies are focused on two species: *S. cerevisiae* and *D. hansenii*. The identification of new yeast species/strains from other cultured fish species is required to explore new beneficial properties to improve fish health and nutrition for a more sustainable

This work has been supported by FONDECYT grant 11110414 from CONICYT-Chile. D. Tovar, thanks to the Mexican Council of Science and Technology (CONACYT) for the grant CB-2010

1 Biotechnology Laboratory, Institute of Nutrition and Food Technology (INTA), University

2 Physiology and Functional Genomics Laboratory, The Center for Biological Research of

[1] FAO. http://www.fao.org/fishery/aquaculture/en (accessed 5 April 2013)


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[32] Nagahama T, Hamamoto M, Nakase T, Horikoshi K. *Rhodotorula benthica* sp nov and *Rhodotorula calyptogenae* sp nov., novel yeast species from animals collected from the deep-sea floor, and *Rhodotorula lysiniphila* sp nov., which is related phylogenetically. International journal of systematic and evolutionary microbiology 2003;53 897-903.

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**Chapter 6**

**The Use and Benefits of** *Bacillus* **Based Biological Agents**

Global shortages in seafood resources have driven the growth of aquaculture as an economic activity, predominantly in developing countries [1-2]. As a consequence of space and resource constraints, traditional aquaculture has been intensified into reticulated systems with high stocking densities of the cultured species [3-4]. This results in an artificial environment that has a propensity for supporting the growth of pathogenic bacteria and the accumulation of waste metabolites in aquaculture systems [5]. The indiscriminate release of spent aquaculture

The outbreak of disease in aquaculture systems, caused by bacterial pathogens, is a complex phenomenon associated with stressful environmental conditions such as poor water quality and can ultimately result in mass mortality and significant loss to the industry [8-9]. The main cause of poor water quality is waste accumulation through hyper-nutrification resulting from excessive feeding rates and high nutrient dietary composition, both of which are common phenomena in intensive aquaculture systems [13-15]. High levels of nitrogenous and phos‐ phorous waste accumulation predispose fish to infestation by parasites and pathogens and also pose a threat to the environment [13,16-17]. Selection for certain characteristics by breeders has also in some cases reduced the vigour in breeding lines, making fish less hardy and more susceptible to disease [10]. Of particular importance is the prevalence of bacterial disease, which results in damage and often leads to death of fish [11]. Gram-negative bacteria such as *Aeromonas hydrophila* are amongst the main pathogenic micro-organisms responsible for bacterial disease [8,12]. Conventional methods of dealing with disease include the use of chemicals and antibiotics, which alter natural microbial populations, damage the environment

and increase resistance and virulence of pathogenic micro-organisms [5,17-21].

© 2014 Nemutanzhela et al.; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use,

distribution, and reproduction in any medium, provided the original work is properly cited.

**in Aquaculture**

Mulalo Edna Nemutanzhela, Yrielle Roets,

Additional information is available at the end of the chapter

wastes into surrounding environments is also problematic [6-7].

Neil Gardiner and Rajesh Lalloo

http://dx.doi.org/10.5772/57375

**1. Introduction**


## **The Use and Benefits of** *Bacillus* **Based Biological Agents in Aquaculture**

[189] Bonaldo A, Thompson KD, Manfrin A, Adams A, Murano E, Mordenti AL, et al. The influence of dietary beta-glucans on the adaptive and innate immune responses of European sea bass (*Dicentrarchus labrax)* vaccinated against vibriosis. Ital J Anim Sci

[190] CooK MT, Hayball PJ, Hutchinson W, Nowak BF, Hayball JD. Administration of a commercial immunostimulant preparation, EcoActiva (TM) as a feed supplement en‐ hances macrophage respiratory burst and the growth rate of snapper (*Pagrus auratus*, Sparidae (Bloch and Schneider)) in winter. Fish Shellfish Immun 2003;14(4) 333-45.

[191] Kamilya D, Maiti TK, Joardar SN, Mal BC. Adjuvant effect of mushroom glucan and bovine lactoferrin upon Aeromonas hydrophila vaccination in catla, *Catla catla* (Ham‐

[192] Y. K, Q. Z. Effect of b-glucan on activity of antioxidant enzymes and Mx gene expres‐ sion in virus infected grass carp. Fish & Shellfish Immunology 2009;27 336-40.

2007;6(2) 151-64.

172 Sustainable Aquaculture Techniques

ilton). J Fish Dis 2006;29(6) 331-7.

Mulalo Edna Nemutanzhela, Yrielle Roets, Neil Gardiner and Rajesh Lalloo

Additional information is available at the end of the chapter

http://dx.doi.org/10.5772/57375

#### **1. Introduction**

Global shortages in seafood resources have driven the growth of aquaculture as an economic activity, predominantly in developing countries [1-2]. As a consequence of space and resource constraints, traditional aquaculture has been intensified into reticulated systems with high stocking densities of the cultured species [3-4]. This results in an artificial environment that has a propensity for supporting the growth of pathogenic bacteria and the accumulation of waste metabolites in aquaculture systems [5]. The indiscriminate release of spent aquaculture wastes into surrounding environments is also problematic [6-7].

The outbreak of disease in aquaculture systems, caused by bacterial pathogens, is a complex phenomenon associated with stressful environmental conditions such as poor water quality and can ultimately result in mass mortality and significant loss to the industry [8-9]. The main cause of poor water quality is waste accumulation through hyper-nutrification resulting from excessive feeding rates and high nutrient dietary composition, both of which are common phenomena in intensive aquaculture systems [13-15]. High levels of nitrogenous and phos‐ phorous waste accumulation predispose fish to infestation by parasites and pathogens and also pose a threat to the environment [13,16-17]. Selection for certain characteristics by breeders has also in some cases reduced the vigour in breeding lines, making fish less hardy and more susceptible to disease [10]. Of particular importance is the prevalence of bacterial disease, which results in damage and often leads to death of fish [11]. Gram-negative bacteria such as *Aeromonas hydrophila* are amongst the main pathogenic micro-organisms responsible for bacterial disease [8,12]. Conventional methods of dealing with disease include the use of chemicals and antibiotics, which alter natural microbial populations, damage the environment and increase resistance and virulence of pathogenic micro-organisms [5,17-21].

© 2014 Nemutanzhela et al.; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Useful micro-organisms play a number of roles in pond culture, particularly with respect to productivity, nutrient cycling, nutrition of the cultured animals, water quality, disease control and environmental impact of effluents [22-24]. Bacterial additives demonstrate the potential to improve water quality and reduce pathogen load and mortality, and have thus emerged in modern day aquaculture as alternatives to chemicals and antibiotics [17,24]. Many bacterial strains have also demonstrated a significant algaecidal effect, which is advantageous in aquaculture systems through reduction of algal growth and hence algal blooms which can destabilise these systems [25-26]. Biological agents such as Gram-positive *Bacillus spp.* offer an attractive solution to the challenges facing modern aquaculture. Advantages of this genus include the ability to grow rapidly, tolerate a wide range of physiological conditions and the ability to sporulate. The robust spores of *Bacillus spp.* are also amenable to simple and cost effective production processes and the end products are stable for long periods [24, 27].

**3. Current challenges of the aquaculture industry**

are estimated at 40% [30].

**3.1. Disease in aquaculture**

Key challenges to the development and growth of aquaculture as an economic activity are limited water resources, energy requirements and the environmental impact of aqua-farming methods. To address these challenges water is re-cycled and farming activities are intensified, resulting in an increase in stocking density, deterioration in water quality, increased incidence of disease, poor feed to body mass conversion efficiencies and higher mortality rates. The net result is reduced yield. Annual losses to the market due to disease, water quality and nutrition

The Use and Benefits of *Bacillus* Based Biological Agents in Aquaculture

http://dx.doi.org/10.5772/57375

175

Definitions of disease include an unhealthy condition or infection with a pathogen. Disease is a complex phenomenon, leading to some form of measurable damage to the host [12]. Outbreaks of disease either begin suddenly and progress rapidly, often with high mortalities, and disappear with equal rapidity (acute disease) or develop more slowly with less severity, but persist for greater periods (chronic disease). Fish disease is the outcome of aberrations to the delicate interaction between the hosts, the disease-causing agent, and external conditions such as unsuitable changes in the environment, poor hygiene and overcrowding. Disease outbreak is generally associated with a primary invasion by parasites or mechanical injury, coupled to stressful environmental conditions such as changing temperature and poor water quality [8]. The prevalence of infectious agents can result in mass mortality causing significant losses to aquaculture operations [9]. Fish diseases such as rotting fins and ulceration of the skin are more prevalent when fluctuation in temperature causes immuno-modulation, resulting in inferior disease resistance and increased mortality [31-32]. An array of stress factors such as poor water quality, parasite load or a natural physiological state (e.g. during the reproductive phase) in the life cycle of the fish are also often associated with outbreaks of disease [12]. Strict selection for desirable characteristics by breeders has also reduced the vigour in breeding lines, making fish less hardy and more susceptible to disease [35]. Disease is not necessarily caused by the action of a single bacterial taxon, as representatives of many bacterial taxa have at one time or another been associated with disease outbreaks. *Aer. hydrophila* and *Pseudomonas spp.* are among the predominant species responsible for causing fish diseases [33]. Many bacterial pathogens are members of the normal microflora of water and/or fish. However not all of these bacteria are primary pathogens as many can be catego‐ rized as opportunistic pathogens, which colonize and cause disease in already damaged hosts.

Environmental factors play a key role in the onset of disease which is reported as being a consequence of the interaction between the host, environmental stress and prevalence of disease causing agents [8,12,34]. Some diseases are prevalent in spring and associated with environmental change to warmer temperatures, a period which is also characterised by an increase in the activity of pathogenic bacteria and parasites. Temperature fluctuation causes transient immuno-modulation of fish, which can result in reduced disease resistance [31-32]. Haemorrhagic septicaemia is an example of this phenomenon, with the disease resulting from infection by a wide range of pathogens that cause open ulcerated lesions and haemorrhages

#### **2. Aquaculture as an economic activity**

The Food and Agriculture Organization of the United Nations [28] reported that capture fisheries and aquaculture supplied the world with about 154 million tonnes of fish in 2011, of which 131 million tonnes were used for human consumption [28]. Aquaculture contributed 79 million tonnes to the global fisheries market in 2010 at a value of \$125 billion. Aquaculture farming used for food consumption comprised 60 million tonnes (\$119 billion), 15 million tonnes was used for fish meal and fish oil production, while the remainder was used for ornamental fish production. With sustained growth in fish production and improved distri‐ bution channels, world supply of fish for human consumption has grown dramatically in the last five decades. An average growth rate of 3.2% per year in the period 1961–2009, has outpaced the increase of 1.7% per year in the world's population. The global aquaculture market comprises both marine and inland (freshwater) farming. The majority (90%) of fresh water ornamental fish are captive bred, compared to only 25 of the 8000 species of marine fish. In 2010, 75% of the quantity of fish and fishery products produced consisted of products destined for human consumption, with ornamental aquaculture contributing a smaller volume.

Aquaculture production is dominated by developing countries, and predominates in Asian countries. The methods of practice of aquaculture have evolved into intensive reticulated systems, in contrast to traditional extensive systems, due to restrictions in availability of land and as a consequence of increased environmental awareness. Aquaculture is probably the fastest growing food-producing sector globally, and the most recent estimates for worldwide aquaculture show that it contributes just over 50% of total fish production. This has been an astonishingly fast growth rate from only 16% of total consumption 15 years ago. The key impetus for growth of the market is global food security and a resistance towards resource exploitation through over-harvesting of natural waters [29]. The consumer drives the aqua‐ culture practice, product quality and branding. End products must thus address consumer food concerns and must at least be as desirable as naturally harvested products.

#### **3. Current challenges of the aquaculture industry**

Key challenges to the development and growth of aquaculture as an economic activity are limited water resources, energy requirements and the environmental impact of aqua-farming methods. To address these challenges water is re-cycled and farming activities are intensified, resulting in an increase in stocking density, deterioration in water quality, increased incidence of disease, poor feed to body mass conversion efficiencies and higher mortality rates. The net result is reduced yield. Annual losses to the market due to disease, water quality and nutrition are estimated at 40% [30].

#### **3.1. Disease in aquaculture**

Useful micro-organisms play a number of roles in pond culture, particularly with respect to productivity, nutrient cycling, nutrition of the cultured animals, water quality, disease control and environmental impact of effluents [22-24]. Bacterial additives demonstrate the potential to improve water quality and reduce pathogen load and mortality, and have thus emerged in modern day aquaculture as alternatives to chemicals and antibiotics [17,24]. Many bacterial strains have also demonstrated a significant algaecidal effect, which is advantageous in aquaculture systems through reduction of algal growth and hence algal blooms which can destabilise these systems [25-26]. Biological agents such as Gram-positive *Bacillus spp.* offer an attractive solution to the challenges facing modern aquaculture. Advantages of this genus include the ability to grow rapidly, tolerate a wide range of physiological conditions and the ability to sporulate. The robust spores of *Bacillus spp.* are also amenable to simple and cost effective production processes and the end products are stable for long periods [24, 27].

The Food and Agriculture Organization of the United Nations [28] reported that capture fisheries and aquaculture supplied the world with about 154 million tonnes of fish in 2011, of which 131 million tonnes were used for human consumption [28]. Aquaculture contributed 79 million tonnes to the global fisheries market in 2010 at a value of \$125 billion. Aquaculture farming used for food consumption comprised 60 million tonnes (\$119 billion), 15 million tonnes was used for fish meal and fish oil production, while the remainder was used for ornamental fish production. With sustained growth in fish production and improved distri‐ bution channels, world supply of fish for human consumption has grown dramatically in the last five decades. An average growth rate of 3.2% per year in the period 1961–2009, has outpaced the increase of 1.7% per year in the world's population. The global aquaculture market comprises both marine and inland (freshwater) farming. The majority (90%) of fresh water ornamental fish are captive bred, compared to only 25 of the 8000 species of marine fish. In 2010, 75% of the quantity of fish and fishery products produced consisted of products destined for human consumption, with ornamental aquaculture contributing a smaller

Aquaculture production is dominated by developing countries, and predominates in Asian countries. The methods of practice of aquaculture have evolved into intensive reticulated systems, in contrast to traditional extensive systems, due to restrictions in availability of land and as a consequence of increased environmental awareness. Aquaculture is probably the fastest growing food-producing sector globally, and the most recent estimates for worldwide aquaculture show that it contributes just over 50% of total fish production. This has been an astonishingly fast growth rate from only 16% of total consumption 15 years ago. The key impetus for growth of the market is global food security and a resistance towards resource exploitation through over-harvesting of natural waters [29]. The consumer drives the aqua‐ culture practice, product quality and branding. End products must thus address consumer

food concerns and must at least be as desirable as naturally harvested products.

**2. Aquaculture as an economic activity**

174 Sustainable Aquaculture Techniques

volume.

Definitions of disease include an unhealthy condition or infection with a pathogen. Disease is a complex phenomenon, leading to some form of measurable damage to the host [12]. Outbreaks of disease either begin suddenly and progress rapidly, often with high mortalities, and disappear with equal rapidity (acute disease) or develop more slowly with less severity, but persist for greater periods (chronic disease). Fish disease is the outcome of aberrations to the delicate interaction between the hosts, the disease-causing agent, and external conditions such as unsuitable changes in the environment, poor hygiene and overcrowding. Disease outbreak is generally associated with a primary invasion by parasites or mechanical injury, coupled to stressful environmental conditions such as changing temperature and poor water quality [8]. The prevalence of infectious agents can result in mass mortality causing significant losses to aquaculture operations [9]. Fish diseases such as rotting fins and ulceration of the skin are more prevalent when fluctuation in temperature causes immuno-modulation, resulting in inferior disease resistance and increased mortality [31-32]. An array of stress factors such as poor water quality, parasite load or a natural physiological state (e.g. during the reproductive phase) in the life cycle of the fish are also often associated with outbreaks of disease [12]. Strict selection for desirable characteristics by breeders has also reduced the vigour in breeding lines, making fish less hardy and more susceptible to disease [35]. Disease is not necessarily caused by the action of a single bacterial taxon, as representatives of many bacterial taxa have at one time or another been associated with disease outbreaks. *Aer. hydrophila* and *Pseudomonas spp.* are among the predominant species responsible for causing fish diseases [33]. Many bacterial pathogens are members of the normal microflora of water and/or fish. However not all of these bacteria are primary pathogens as many can be catego‐ rized as opportunistic pathogens, which colonize and cause disease in already damaged hosts.

Environmental factors play a key role in the onset of disease which is reported as being a consequence of the interaction between the host, environmental stress and prevalence of disease causing agents [8,12,34]. Some diseases are prevalent in spring and associated with environmental change to warmer temperatures, a period which is also characterised by an increase in the activity of pathogenic bacteria and parasites. Temperature fluctuation causes transient immuno-modulation of fish, which can result in reduced disease resistance [31-32]. Haemorrhagic septicaemia is an example of this phenomenon, with the disease resulting from infection by a wide range of pathogens that cause open ulcerated lesions and haemorrhages

high nutrient dietary composition, which has a significant influence on the survival, growth and reproduction of fish [13-15,17,46]. Nitrogen and phosphorous waste accumulation pose a threat to the environment and can predispose fish to infestation by parasites and pathogens

Ammonium Nitrite Nitrate

**NITRIFICATION**

Nitric Oxide

**D SI S MI LI ATORY**

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**DEN**

**TI R**

**FI CI AT OI N**

Nitrous Oxide

Dinitrogen

Ammonia is a primary metabolic waste of fish and is excreted through the gills by bronchial diffusion. It is also produced by bacterial ammoniafication of uneaten food and faeces and is released from the mineralization of sediment [47-50]. Ammonia is oxidised to nitrite and finally to nitrate through the process of nitrification, with ammonia and nitrite being the most toxic of these metabolites to fish. Nitrite can also be produced through the process of denitrification [48]. Ammonia concentrations above 0.3 mg/l have been reported as toxic to fish, with hyperplasia of gill tissue, gill necrosis, pathological evidence of kidney and liver damage and reduction in growth rate occurring at this and higher concentrations [51-53]. Exposure to high ammonia concentration also causes epithelial lifting on gill filaments resulting in respiratory impairment and mortality [54]. Nitrite is usually present at low concentrations in natural systems, except when there is an imbalance, because it is a common intermediate in nitrification and denitrification, catabolic ammoniafication and nitrate assimilation [55]. Through denitri‐ fication, nitrite can be produced as an intermediate in the conversion of nitrate to nitric oxide, nitrous oxide and nitrogen gas [56]. Nitrite is considered harmful to fish at levels of 0.15 mg/l and above, causing conversion of haemoglobin to methaemoglobin in blood, which results in inhibition of oxygen transport and mortality due to brown blood disease [13]. Increased concentrations of nitrite also significantly affect weight gain, specific growth rate

Dietary phosphorous is an essential component of fish feeds as it improves weight gain and feed conversion ratio. It is however poorly utilized due to the absence of an acidic stomach in

due to a reduction in immunity [13,17].

**Figure 2.** Nitrification and denitrification cycle [30].

and food conversion efficiency [57].

**Figure 1.** Interactive factors influencing disease in aquaculture (modified from [12]).

on the infected fish [12,36-37]. Additional clinical symptoms can include fin and tail rot, the loss of scales, localized haemorrhages, particularly in the gills and vent, exophthalmia and abdominal distension [12]. The acute form of this disease is of sudden onset, and the fish usually die within 2-3 days [38-40]. The main pathogenic micro-organisms involved in septicaemia are *Aer. hydrophila, Aer. salmonicida*, and to a lesser extent *Pseudomonas floures‐ cens*[8,12]. *Aer. hydrophila* is known to produce haemolysin, cytotoxins and enterotoxins which cause tissue necrosis resulting in ulcers, dropsy and abdominal oedema associated with haemorrhagic septicaemia [8]. *Aer. salmonicida* has been specifically associated with ulcerative erythrodermatitis and furunculosis [8,12,41]. *P. flourescens,* which is ubiquitous in fresh water and is generally regarded as a secondary invader of damaged tissue, has also been associated with outbreaks of septicaemia [42-45]. There is therefore merit in reducing the prevalence of these bacteria in aquaculture systems.


**Table 1.** Predominant bacterial pathogens causing disease of *Cyprinus carpio* (modified from [12]).

#### **3.2. Water quality**

Use of reticulated systems for intensive culture results in substantial amounts of particulate organic and soluble inorganic excretory waste, due mainly to increased stocking density [17]. The main source of this waste is hyper-nutrification, resulting from excessive feeding rates and high nutrient dietary composition, which has a significant influence on the survival, growth and reproduction of fish [13-15,17,46]. Nitrogen and phosphorous waste accumulation pose a threat to the environment and can predispose fish to infestation by parasites and pathogens due to a reduction in immunity [13,17].

**Figure 2.** Nitrification and denitrification cycle [30].

on the infected fish [12,36-37]. Additional clinical symptoms can include fin and tail rot, the loss of scales, localized haemorrhages, particularly in the gills and vent, exophthalmia and abdominal distension [12]. The acute form of this disease is of sudden onset, and the fish usually die within 2-3 days [38-40]. The main pathogenic micro-organisms involved in septicaemia are *Aer. hydrophila, Aer. salmonicida*, and to a lesser extent *Pseudomonas floures‐ cens*[8,12]. *Aer. hydrophila* is known to produce haemolysin, cytotoxins and enterotoxins which cause tissue necrosis resulting in ulcers, dropsy and abdominal oedema associated with haemorrhagic septicaemia [8]. *Aer. salmonicida* has been specifically associated with ulcerative erythrodermatitis and furunculosis [8,12,41]. *P. flourescens,* which is ubiquitous in fresh water and is generally regarded as a secondary invader of damaged tissue, has also been associated with outbreaks of septicaemia [42-45]. There is therefore merit in reducing the prevalence of

**Figure 1.** Interactive factors influencing disease in aquaculture (modified from [12]).

Host Stressor

Disease Agent

Disease

*Aeromonas hydrophila* Haemorrhagic septicaemia, motile *Aeromonas* septicaemia,

Use of reticulated systems for intensive culture results in substantial amounts of particulate organic and soluble inorganic excretory waste, due mainly to increased stocking density [17]. The main source of this waste is hyper-nutrification, resulting from excessive feeding rates and

*Aeromonas salmonicida* Furunculosis, carp erythrodermatitis, ulcer disease.

**Table 1.** Predominant bacterial pathogens causing disease of *Cyprinus carpio* (modified from [12]).

redsore disease, fin rot

these bacteria in aquaculture systems.

176 Sustainable Aquaculture Techniques

**3.2. Water quality**

**Pathogen Disease**

*Pseudomonas fluorescens* Generalized septicaemia

*Pseudomonas pseudoalcaligenes* Skin ulceration

Ammonia is a primary metabolic waste of fish and is excreted through the gills by bronchial diffusion. It is also produced by bacterial ammoniafication of uneaten food and faeces and is released from the mineralization of sediment [47-50]. Ammonia is oxidised to nitrite and finally to nitrate through the process of nitrification, with ammonia and nitrite being the most toxic of these metabolites to fish. Nitrite can also be produced through the process of denitrification [48]. Ammonia concentrations above 0.3 mg/l have been reported as toxic to fish, with hyperplasia of gill tissue, gill necrosis, pathological evidence of kidney and liver damage and reduction in growth rate occurring at this and higher concentrations [51-53]. Exposure to high ammonia concentration also causes epithelial lifting on gill filaments resulting in respiratory impairment and mortality [54]. Nitrite is usually present at low concentrations in natural systems, except when there is an imbalance, because it is a common intermediate in nitrification and denitrification, catabolic ammoniafication and nitrate assimilation [55]. Through denitri‐ fication, nitrite can be produced as an intermediate in the conversion of nitrate to nitric oxide, nitrous oxide and nitrogen gas [56]. Nitrite is considered harmful to fish at levels of 0.15 mg/l and above, causing conversion of haemoglobin to methaemoglobin in blood, which results in inhibition of oxygen transport and mortality due to brown blood disease [13]. Increased concentrations of nitrite also significantly affect weight gain, specific growth rate and food conversion efficiency [57].

Dietary phosphorous is an essential component of fish feeds as it improves weight gain and feed conversion ratio. It is however poorly utilized due to the absence of an acidic stomach in some species and because phosphate is often bound to phytic acid in vegetable protein [58]. Ingested phosphorous is therefore lost in faeces and results in poor water quality with increased algal growth and eutrophication [59-60].

nitrite, nitrate and phosphate. Although the concentration of these residues can be reduced by the addition of fresh water, purges of effluent containing high concentrations of these com‐ pounds into natural river and seawaters results in a deterioration of the environment and can lead to algal blooms, which may be detrimental to natural ecosystems [60]. High capital investment is thus required for installation of larger scale filtration systems to compensate for

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**5. Biological solutions as alternatives for addressing challenges in**

Given the challenges in conventional aquaculture practise, alternative methods for disease control and enhancement of water quality are desperately required. Micro-organisms play important roles in aquaculture, particularly with respect to nutrient cycling and the nutrition of the cultured animals, water quality, disease control and the environmental impact of effluent [22]. Beneficial microbes can be used to alter or regulate the composition of bacterial flora in a water system to optimise fish production by reducing pathogen concentration, by improving water quality through reduction of waste ions and through accelerated mineralization and nitrification, by reducing algal growth and by accelerating sediment decomposition [17,20,70-71]. These biological agents also confer the added advantage of natural integration into existing ecosystems and present opportunities for development of multi-effect products which are attractive to end users. The marketing of biological and "organic certified" solutions for enhancement of fish health has also gained consumer acceptance. The use of beneficial microbes is a more appropriate remedy than the use of chemicals but successful application requires an understanding of the ecological processes occurring in aquaculture systems, of the agents responsible for disease and knowledge of the beneficial characteristics of bacteria to be

Microbial webs are an integral part of all aquaculture systems and have a direct impact on productivity, especially in intensive culture operations. The quality of water and health of the cultured species is governed by the activities of a diversity of microbes with different roles and interactions in the ecosystem [61]. There are distinct uses of bacterial supplements in aqua‐ culture for bio-augmentation as probiotics and as biocontrol and bioremediation agents [19]. Bio-augmentation refers to the augmentation of the environment and/or the microbes to result in enhanced fish health while probiotics are normally associated with feed and digestion. A strict definition of biocontrol agents are microorganisms that are antagonistic to pathogens. In some instances however the description of biocontrol agents transcends the boundary between bio-augmentation, and the exclusion of pathogens [73]. Bioremediation refers to the break‐

A probiotic can be defined as a cultured product or live microbial feed supplement which beneficially affects the host by improving its intestinal balance [74]. The important components

these inefficiencies of conventional filtration.

**aquaculture**

used as biological agents [5,72].

down of pollutants or waste by microbes [5,61].

**5.1. Biological agents**

#### **4. Conventional approaches for addressing challenges in aquaculture**

The rearing of fish in reticulated systems results in a highly artificial environment which has a propensity for the accumulation of waste metabolites and which promotes the growth of pathogenic bacteria. Management considerations for aquaculture operations include nutrition, water quality, physical parameters and pathogen and disease control [61]. Chemicals are often used to control disease and include a wide range of topical disinfectants, organophosphates, antimicrobials and parasiticides to deal with disease and water quality [18,26]. Water quality is traditionally managed through conventional reticulated filtration systems, which are sensitive to process fluctuations and can result in mass mortality when the systems crash.

#### **4.1. Use of chemicals in aquaculture**

Antimicrobial agents are extensively used for treatment during disease outbreak or at prophylactic doses to prevent outbreak of disease. This can lead to antibiotic resistance and increased virulence of pathogenic organisms, leading to a requirement for high doses of existing drugs or new drugs to control disease [5,17,20]. Antibiotic resistance can pose a risk to human health and can cause mass mortality of fish [63]. Studies have also demonstrated that chemicals used in aquaculture can be toxic to the fish themselves, with exposure to some chemicals causing a stress response and blood biochemical changes [17,21,64]. The presence of higher drug concentrations, and an ever increasing spectrum of chemical residues, can result in detrimental effects to consumers and the environment [62]. These chemicals also have a negative impact on the aquaculture filtration systems themselves, resulting in a deterioration in water quality. Chemicals are often recalcitrant, persisting for several days to months, and can cause alterations in naturally occurring bacterial populations, Regulators have recognised the risks posed by use of chemicals as substantiated by the ever increasing list of banned substances, a consequence of which is a reduction in treatment options for aquaculture [24,65-66]. Governments and organizations have recently introduced much tighter restrictions on the use of antibiotics in animal production. As an example, the European Union (EU) banned the use of avoparcin in 1997 and in 1999 included virginiamycin, spiramycin, tylosin and bacitracin as banned growth promoters in animal feeds [67-68].

#### **4.2. Conventional biofiltration**

Normally the oxidation of ammonia to the more benign nitrate ion occurs through ammonia and nitrite oxidising obligate chemoautotrophs such as *Nitrosomonas* and *Nitrobacter spp.* which are slow growing and sensitive to fluctuations in environmental conditions [55,69]. Removal of nitrate and nitrite is a challenge in intensive aquaculture operations. System fluctuations, resulting from the sensitivity of natural filter bacteria, often lead to accumulation of ammonia, nitrite, nitrate and phosphate. Although the concentration of these residues can be reduced by the addition of fresh water, purges of effluent containing high concentrations of these com‐ pounds into natural river and seawaters results in a deterioration of the environment and can lead to algal blooms, which may be detrimental to natural ecosystems [60]. High capital investment is thus required for installation of larger scale filtration systems to compensate for these inefficiencies of conventional filtration.

### **5. Biological solutions as alternatives for addressing challenges in aquaculture**

Given the challenges in conventional aquaculture practise, alternative methods for disease control and enhancement of water quality are desperately required. Micro-organisms play important roles in aquaculture, particularly with respect to nutrient cycling and the nutrition of the cultured animals, water quality, disease control and the environmental impact of effluent [22]. Beneficial microbes can be used to alter or regulate the composition of bacterial flora in a water system to optimise fish production by reducing pathogen concentration, by improving water quality through reduction of waste ions and through accelerated mineralization and nitrification, by reducing algal growth and by accelerating sediment decomposition [17,20,70-71]. These biological agents also confer the added advantage of natural integration into existing ecosystems and present opportunities for development of multi-effect products which are attractive to end users. The marketing of biological and "organic certified" solutions for enhancement of fish health has also gained consumer acceptance. The use of beneficial microbes is a more appropriate remedy than the use of chemicals but successful application requires an understanding of the ecological processes occurring in aquaculture systems, of the agents responsible for disease and knowledge of the beneficial characteristics of bacteria to be used as biological agents [5,72].

#### **5.1. Biological agents**

some species and because phosphate is often bound to phytic acid in vegetable protein [58]. Ingested phosphorous is therefore lost in faeces and results in poor water quality with

**4. Conventional approaches for addressing challenges in aquaculture**

The rearing of fish in reticulated systems results in a highly artificial environment which has a propensity for the accumulation of waste metabolites and which promotes the growth of pathogenic bacteria. Management considerations for aquaculture operations include nutrition, water quality, physical parameters and pathogen and disease control [61]. Chemicals are often used to control disease and include a wide range of topical disinfectants, organophosphates, antimicrobials and parasiticides to deal with disease and water quality [18,26]. Water quality is traditionally managed through conventional reticulated filtration systems, which are sensitive to process fluctuations and can result in mass mortality when the systems crash.

Antimicrobial agents are extensively used for treatment during disease outbreak or at prophylactic doses to prevent outbreak of disease. This can lead to antibiotic resistance and increased virulence of pathogenic organisms, leading to a requirement for high doses of existing drugs or new drugs to control disease [5,17,20]. Antibiotic resistance can pose a risk to human health and can cause mass mortality of fish [63]. Studies have also demonstrated that chemicals used in aquaculture can be toxic to the fish themselves, with exposure to some chemicals causing a stress response and blood biochemical changes [17,21,64]. The presence of higher drug concentrations, and an ever increasing spectrum of chemical residues, can result in detrimental effects to consumers and the environment [62]. These chemicals also have a negative impact on the aquaculture filtration systems themselves, resulting in a deterioration in water quality. Chemicals are often recalcitrant, persisting for several days to months, and can cause alterations in naturally occurring bacterial populations, Regulators have recognised the risks posed by use of chemicals as substantiated by the ever increasing list of banned substances, a consequence of which is a reduction in treatment options for aquaculture [24,65-66]. Governments and organizations have recently introduced much tighter restrictions on the use of antibiotics in animal production. As an example, the European Union (EU) banned the use of avoparcin in 1997 and in 1999 included virginiamycin, spiramycin, tylosin

Normally the oxidation of ammonia to the more benign nitrate ion occurs through ammonia and nitrite oxidising obligate chemoautotrophs such as *Nitrosomonas* and *Nitrobacter spp.* which are slow growing and sensitive to fluctuations in environmental conditions [55,69]. Removal of nitrate and nitrite is a challenge in intensive aquaculture operations. System fluctuations, resulting from the sensitivity of natural filter bacteria, often lead to accumulation of ammonia,

and bacitracin as banned growth promoters in animal feeds [67-68].

increased algal growth and eutrophication [59-60].

178 Sustainable Aquaculture Techniques

**4.1. Use of chemicals in aquaculture**

**4.2. Conventional biofiltration**

Microbial webs are an integral part of all aquaculture systems and have a direct impact on productivity, especially in intensive culture operations. The quality of water and health of the cultured species is governed by the activities of a diversity of microbes with different roles and interactions in the ecosystem [61]. There are distinct uses of bacterial supplements in aqua‐ culture for bio-augmentation as probiotics and as biocontrol and bioremediation agents [19]. Bio-augmentation refers to the augmentation of the environment and/or the microbes to result in enhanced fish health while probiotics are normally associated with feed and digestion. A strict definition of biocontrol agents are microorganisms that are antagonistic to pathogens. In some instances however the description of biocontrol agents transcends the boundary between bio-augmentation, and the exclusion of pathogens [73]. Bioremediation refers to the break‐ down of pollutants or waste by microbes [5,61].

A probiotic can be defined as a cultured product or live microbial feed supplement which beneficially affects the host by improving its intestinal balance [74]. The important components of this definition reflect the need for a living microorganism and application to the host as a feed supplement. A broader definition is that of a live microbial supplement, which benefi‐ cially affects the host animal by improving its microbial balance [75]. In a third proposed definition, a probiotic is any microbial preparation, or the components of microbial cells, with a beneficial effect on the health of the host [76]. It is thus apparent that there are variations in the actual application of the terminology associated with biological agents [77]. Based on the observation that organisms are capable of temporarily modifying the bacterial composition of water and sediment, it was suggested that the definition should include the addition of live naturally occurring bacteria to tanks and ponds [73]. Verschuere *et al.* [26] presented a wider and useful description, given the broad spectrum effects of microbial consortia used in aquaculture. They described a biological agent as a live microbial adjunct, which has a beneficial effect on the host by modifying the host-associated or ambient microbial community, by ensuring improved use of the feed or enhancing its nutritional value, by enhancing the host response towards disease, or by improving the quality of its ambient environment.

The range of biological treatments examined for use in aquaculture has encompassed both Gram-negative and Gram-positive bacteria, bacteriophages, yeasts, unicellular algae, enzyme preparations and plant extracts. Microbes have been successfully applied to aquaculture systems via inclusion in artificial or live feed, by addition to biofiltration systems and by direct addition to water [77]. Most biological treatments used in aquaculture belong to the genera *Lactobacillus*, *Vibrio*, *Bacillus*, or *Pseudomonas*, although other genera have been applied to a

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Mechanisms of probiosis include competition with pathogens for adhesion sites, immune stimulation, synthesis of antimicrobials, competitive exclusion, bioaugmentation and biore‐ mediation [23-24,26,78]. Although many biological treatments have been developed over the last decade, the approach used has generally been empirical and the exact modes of action were rarely elucidated, negatively affecting technology adoption and implementation in

One possible mechanism for preventing colonization by pathogens is competition for adhesion sites on gut or other tissue surfaces [78]. It is known that the ability to adhere to enteric mucus and cell wall surfaces is necessary for bacteria to become established in fish intestines [79-80]. The ability to adhere and grow on or in intestinal or external mucus has been demonstrated for fish pathogens in *in vitro* environments [81-82]. Since bacterial adhesion is important during the initial stage of pathogenic infection, competition with pathogens for adhesion receptors

Immuno-stimulants are chemical compounds that activate the immune system of animals and render them more resistant to infections [84]. Fish larvae, shrimps, and other invertebrates have immune systems that are less well developed than their adult counterparts and are dependent primarily on non-specific immune responses for their resistance to infection [85]. Bacteria may act as immuno-stimulants in fish and shrimp, but it has not yet been conclusively demonstrated that they have a beneficial effect on the immune response of cultured aquatic

Microbial populations may release chemical substances that have a bacteriocidal or bacterio‐ static effect on other microbial populations, which can alter inter-population relationships. The presence of bacteria producing inhibitory substances is thought to constitute a barrier against the proliferation of opportunistic pathogens. In general, the antibacterial effect of bacteria is due to the production of antibiotics, bacteriocins, siderophores, enzymes, hydrogen peroxide or alteration of pH by the production of organic acids, ammonia or diacetyl [26]. Many authors assign the inhibitory effects detected in *in vitro* antagonism tests to bacteriocins or antibiotics without investigating other possible mechanisms. It has been argued that growth inhibition could, in many cases, be accounted for by primary metabolites or simply by a decrease of the pH [26]. At this stage however, the association between amensalistic activity and *in vivo* probiotic activity is very weak and circumstantial. Typically, a correlation is made between the *in vitro* ability of the probiotics to inhibit pathogens and the *in vivo* protection of the cultured aquatic species, but in none of the studies investigated has it been shown unequivocally that

lesser extent [26].

aquaculture [26].

species [26,86].

**5.2. Modes of action of biological agents**

might be the first probiotic effect of a biological agent [81,83].

**Figure 3.** Schematic representation of the effects of biological agents in addressing aquaculture challenges.

The range of biological treatments examined for use in aquaculture has encompassed both Gram-negative and Gram-positive bacteria, bacteriophages, yeasts, unicellular algae, enzyme preparations and plant extracts. Microbes have been successfully applied to aquaculture systems via inclusion in artificial or live feed, by addition to biofiltration systems and by direct addition to water [77]. Most biological treatments used in aquaculture belong to the genera *Lactobacillus*, *Vibrio*, *Bacillus*, or *Pseudomonas*, although other genera have been applied to a lesser extent [26].

#### **5.2. Modes of action of biological agents**

of this definition reflect the need for a living microorganism and application to the host as a feed supplement. A broader definition is that of a live microbial supplement, which benefi‐ cially affects the host animal by improving its microbial balance [75]. In a third proposed definition, a probiotic is any microbial preparation, or the components of microbial cells, with a beneficial effect on the health of the host [76]. It is thus apparent that there are variations in the actual application of the terminology associated with biological agents [77]. Based on the observation that organisms are capable of temporarily modifying the bacterial composition of water and sediment, it was suggested that the definition should include the addition of live naturally occurring bacteria to tanks and ponds [73]. Verschuere *et al.* [26] presented a wider and useful description, given the broad spectrum effects of microbial consortia used in aquaculture. They described a biological agent as a live microbial adjunct, which has a beneficial effect on the host by modifying the host-associated or ambient microbial community, by ensuring improved use of the feed or enhancing its nutritional value, by enhancing the host

response towards disease, or by improving the quality of its ambient environment.

BIOLOGICAL TREATMENT

HOST ENVIRONMENT

Antagonistic to Pathogen

ENHANCED HEALTH, SURVIVAL AND FEED CONVERSION

**Figure 3.** Schematic representation of the effects of biological agents in addressing aquaculture challenges.

Niche/Substrate Competition

Improves Water Quality

BIO-AUGMENTATION

COMPETITIVE EXCLUSION

Direct Inhibition

DIRECT EXCLUSION

Improves Digestibility

180 Sustainable Aquaculture Techniques

Transient/ Resident in GI tract

PROBIOTIC

Mechanisms of probiosis include competition with pathogens for adhesion sites, immune stimulation, synthesis of antimicrobials, competitive exclusion, bioaugmentation and biore‐ mediation [23-24,26,78]. Although many biological treatments have been developed over the last decade, the approach used has generally been empirical and the exact modes of action were rarely elucidated, negatively affecting technology adoption and implementation in aquaculture [26].

One possible mechanism for preventing colonization by pathogens is competition for adhesion sites on gut or other tissue surfaces [78]. It is known that the ability to adhere to enteric mucus and cell wall surfaces is necessary for bacteria to become established in fish intestines [79-80]. The ability to adhere and grow on or in intestinal or external mucus has been demonstrated for fish pathogens in *in vitro* environments [81-82]. Since bacterial adhesion is important during the initial stage of pathogenic infection, competition with pathogens for adhesion receptors might be the first probiotic effect of a biological agent [81,83].

Immuno-stimulants are chemical compounds that activate the immune system of animals and render them more resistant to infections [84]. Fish larvae, shrimps, and other invertebrates have immune systems that are less well developed than their adult counterparts and are dependent primarily on non-specific immune responses for their resistance to infection [85]. Bacteria may act as immuno-stimulants in fish and shrimp, but it has not yet been conclusively demonstrated that they have a beneficial effect on the immune response of cultured aquatic species [26,86].

Microbial populations may release chemical substances that have a bacteriocidal or bacterio‐ static effect on other microbial populations, which can alter inter-population relationships. The presence of bacteria producing inhibitory substances is thought to constitute a barrier against the proliferation of opportunistic pathogens. In general, the antibacterial effect of bacteria is due to the production of antibiotics, bacteriocins, siderophores, enzymes, hydrogen peroxide or alteration of pH by the production of organic acids, ammonia or diacetyl [26]. Many authors assign the inhibitory effects detected in *in vitro* antagonism tests to bacteriocins or antibiotics without investigating other possible mechanisms. It has been argued that growth inhibition could, in many cases, be accounted for by primary metabolites or simply by a decrease of the pH [26]. At this stage however, the association between amensalistic activity and *in vivo* probiotic activity is very weak and circumstantial. Typically, a correlation is made between the *in vitro* ability of the probiotics to inhibit pathogens and the *in vivo* protection of the cultured aquatic species, but in none of the studies investigated has it been shown unequivocally that the production of inhibitory compounds is the cause of the *in vivo* probiotic activity of the strains [26]. Further research is thus required in this field.

By maintaining higher levels of these Gram-positive bacteria in production systems, farmers can reduce the build-up of dissolved and particulate organic carbon during the culture cycle [26]. Nitrite accumulation may be caused by imbalances in the activities of nitrate and nitrite reductase and inhibition of nitrite reductase by oxygen. Bio-communities however usually contain bacteria with different nitrate and nitrite reductase activities enhancing the denitrifi‐ cation efficiency of the overall bio-community [93]. Although the specific nitrification activity of heterotrophic bacteria is generally lower than that of chemoautotrophs, the overall impact on denitrification could be greater due to the higher cell numbers of heterotrophic bacteria and their robustness to process fluctuations. There is therefore merit in utilizing biological agents for nitrification and phosphate bioremediation to improve water quality in aquaculture [26,86]. Many bacterial strains have been shown to have a significant algaecidal effect on various species of micro algae [26,94-95]. This effect is valuable where algal blooms may be problem‐ atic, causing blockages to flow systems and changes in oxygen concentration due to algal

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Formulation of bacterial consortia with interactive effects, including pathogen inhibition, high growth rate and improvement in water quality, provides broad spectrum effects in a single product [72]. Lalloo *et al.* [72] obtained natural isolates from mud sediment and *Cyprinus carpio* tissue samples, which were purified and assessed in *in vitro* studies for growth inhibition of pathogenic *Aer. hydrophila* and for their ability to reduce the concentrations of ammonium, nitrate, nitrite and phosphate ions. A consortium of *Bacillus* isolates was formulated for *in vivo* trials using *C. carpio,* and demonstrated positive results for pathogen inhibition and waste

The application of *Bacillus* species in aquaculture is growing rapidly, especially in countries where intensive systems for farming of fish and shellfish are utilised [23-24,72]. *Bacilli* are used as components of biocontrol products which are often composed of mixtures of species, which are able to exert a range of beneficial effects on aquaculture systems [24,72]. They are ubiqui‐ tous in sediments and are naturally ingested by animals [5]. An advantage of using *Bacillus spp.* is that they are not generally involved in horizontal gene transfer processes with Gramnegative organisms such as *Vibrio* and *Aeromonas spp.* and are thus unlikely to acquire genes for antibiotic resistance or virulence from these species [5]. Other key positive characteristics of this genus are the ability to replicate rapidly, tolerate a multitude of environmental condi‐ tions and provide a broad range of beneficial effects that can improve aquaculture productivity [24,27]. Additionally, the ability of *Bacilli* to sporulate enables downstream processing and formulation of shelf stable spore based products [88]. Many spore forming *Bacilli* are sold worldwide as components of products for human and animal use, including *B. coagulans*, *B.*

Several studies have demonstrated the application of *Bacillu*s based products in aquaculture. *Bacillus* strain IP5832 spores fed to turbot larvae resulted in a decrease in the *Vibrionaceae* population with significant improvement in weight gain and survival of the larvae [19]. In a further study it was reported that a *Bacillus spp.* improved food absorption by enhancing

cellular respiration.

ion reduction.

**5.3.** *Bacillus spp***. as attractive biological agents**

*subtilis*, *B. clausii*, *B. cereus* and *B. toyoi* [23].

Competition for nutrients or available energy may determine how different microbial popu‐ lations coexist in the same ecosystem, but to date there have been no comprehensive studies on this subject [87]. Competitive exclusion is an ecological process that allows manipulation of the bacterial species composition in water, sediment or the host itself, by competitive assimilation of nutrients and/or an intrinsically higher growth rate [5,23-24]. The microbial ecosystem in aquaculture environments is generally dominated by heterotrophs competing for organic substrates as both carbon and energy sources. Competitive utilization of these substrates can thus attenuate target pathogenic microorganisms as demonstrated by several studies. A bacterial strain selected for its active growth in organic-poor medium, was reported to prevent the establishment of a *Vibrio alginolyticus* infection *in vivo. S*ince the strain had demonstrated no *in vitro* inhibitory effect on the pathogen it was thought to be a consequence of competitive exclusion [25]. In another example, *in vitro* antagonism tests did not show production of extracellular inhibitory compounds, yet living cells were required to protect *Artemia* against pathogenic *V. alginolyticus*. It was suggested that the selected bacteria exerted their protective action by competing with the pathogen for chemicals and available energy [26].

Virtually all microorganisms require iron for growth [88]. Siderophores are low molecular weight (< 1,500), ferric ion-specific chelating agents that can dissolve precipitated iron thus making it available for microbial growth [89]. The ecological significance of siderophores resides in their capacity to scavenge an essential nutrient from the environment and deprive competitors from accessing it. The requirement for iron is high for many pathogens in highly iron limited environments [88,90] and several studies have reported a correlation between iron availability and pathogen growth. In a challenge test with pathogenic *V. anguillarum*, salmon mortality was reported to increase linearly with dietary iron content [91]. Siderophoreproducing *P. fluorescens* AH2 was demonstrated to inhibit several Gram-positive and Gramnegative bacteria, particularly when iron availability was limited [75]. *In vitro* co-culture tests revealed that the growth of *V. anguillarum* was inhibited by the filter-sterilized supernatants from iron-limited cultures of *P. fluorescens* AH2 but not from iron-replete cultures. *In vivo* studies using rainbow trout juveniles demonstrated a 46% reduction in mortality due to *V. anguillarum* infection when the culture was treated by *P. fluorescens* AH2 *in vivo*. Non-patho‐ genic bacteria which produce siderophores could thus be used to compete with pathogens whose pathogenicity is known to be dependent on the availability of iron [26]. It must be noted however that the body of evidence supporting the competition for free iron as a mode of action of biological agents is still scant and at present still circumstantial [26]. More recently Lalloo *et al.* [92] were able to demonstrate siderophore production as the mode of action responsible for attenuation of pathogen growth in both *in vitro* and *in vivo* studies.

Improvement in water quality has been recorded in studies involving the addition of biological agents. These improvements include the reduction of total and dissolved solids concentrations, lower concentrations of waste ions and a reduction in algal populations. Gram-positive bacteria are generally more efficient in converting organic matter to CO2 than Gram-negative bacteria, which convert a greater percentage of organic carbon to bacterial biomass or slime. By maintaining higher levels of these Gram-positive bacteria in production systems, farmers can reduce the build-up of dissolved and particulate organic carbon during the culture cycle [26]. Nitrite accumulation may be caused by imbalances in the activities of nitrate and nitrite reductase and inhibition of nitrite reductase by oxygen. Bio-communities however usually contain bacteria with different nitrate and nitrite reductase activities enhancing the denitrifi‐ cation efficiency of the overall bio-community [93]. Although the specific nitrification activity of heterotrophic bacteria is generally lower than that of chemoautotrophs, the overall impact on denitrification could be greater due to the higher cell numbers of heterotrophic bacteria and their robustness to process fluctuations. There is therefore merit in utilizing biological agents for nitrification and phosphate bioremediation to improve water quality in aquaculture [26,86]. Many bacterial strains have been shown to have a significant algaecidal effect on various species of micro algae [26,94-95]. This effect is valuable where algal blooms may be problem‐ atic, causing blockages to flow systems and changes in oxygen concentration due to algal cellular respiration.

Formulation of bacterial consortia with interactive effects, including pathogen inhibition, high growth rate and improvement in water quality, provides broad spectrum effects in a single product [72]. Lalloo *et al.* [72] obtained natural isolates from mud sediment and *Cyprinus carpio* tissue samples, which were purified and assessed in *in vitro* studies for growth inhibition of pathogenic *Aer. hydrophila* and for their ability to reduce the concentrations of ammonium, nitrate, nitrite and phosphate ions. A consortium of *Bacillus* isolates was formulated for *in vivo* trials using *C. carpio,* and demonstrated positive results for pathogen inhibition and waste ion reduction.

#### **5.3.** *Bacillus spp***. as attractive biological agents**

the production of inhibitory compounds is the cause of the *in vivo* probiotic activity of the

Competition for nutrients or available energy may determine how different microbial popu‐ lations coexist in the same ecosystem, but to date there have been no comprehensive studies on this subject [87]. Competitive exclusion is an ecological process that allows manipulation of the bacterial species composition in water, sediment or the host itself, by competitive assimilation of nutrients and/or an intrinsically higher growth rate [5,23-24]. The microbial ecosystem in aquaculture environments is generally dominated by heterotrophs competing for organic substrates as both carbon and energy sources. Competitive utilization of these substrates can thus attenuate target pathogenic microorganisms as demonstrated by several studies. A bacterial strain selected for its active growth in organic-poor medium, was reported to prevent the establishment of a *Vibrio alginolyticus* infection *in vivo. S*ince the strain had demonstrated no *in vitro* inhibitory effect on the pathogen it was thought to be a consequence of competitive exclusion [25]. In another example, *in vitro* antagonism tests did not show production of extracellular inhibitory compounds, yet living cells were required to protect *Artemia* against pathogenic *V. alginolyticus*. It was suggested that the selected bacteria exerted their protective action by competing with the pathogen for chemicals and available energy [26].

Virtually all microorganisms require iron for growth [88]. Siderophores are low molecular weight (< 1,500), ferric ion-specific chelating agents that can dissolve precipitated iron thus making it available for microbial growth [89]. The ecological significance of siderophores resides in their capacity to scavenge an essential nutrient from the environment and deprive competitors from accessing it. The requirement for iron is high for many pathogens in highly iron limited environments [88,90] and several studies have reported a correlation between iron availability and pathogen growth. In a challenge test with pathogenic *V. anguillarum*, salmon mortality was reported to increase linearly with dietary iron content [91]. Siderophoreproducing *P. fluorescens* AH2 was demonstrated to inhibit several Gram-positive and Gramnegative bacteria, particularly when iron availability was limited [75]. *In vitro* co-culture tests revealed that the growth of *V. anguillarum* was inhibited by the filter-sterilized supernatants from iron-limited cultures of *P. fluorescens* AH2 but not from iron-replete cultures. *In vivo* studies using rainbow trout juveniles demonstrated a 46% reduction in mortality due to *V. anguillarum* infection when the culture was treated by *P. fluorescens* AH2 *in vivo*. Non-patho‐ genic bacteria which produce siderophores could thus be used to compete with pathogens whose pathogenicity is known to be dependent on the availability of iron [26]. It must be noted however that the body of evidence supporting the competition for free iron as a mode of action of biological agents is still scant and at present still circumstantial [26]. More recently Lalloo *et al.* [92] were able to demonstrate siderophore production as the mode of action responsible

for attenuation of pathogen growth in both *in vitro* and *in vivo* studies.

Improvement in water quality has been recorded in studies involving the addition of biological agents. These improvements include the reduction of total and dissolved solids concentrations, lower concentrations of waste ions and a reduction in algal populations. Gram-positive bacteria are generally more efficient in converting organic matter to CO2 than Gram-negative bacteria, which convert a greater percentage of organic carbon to bacterial biomass or slime.

strains [26]. Further research is thus required in this field.

182 Sustainable Aquaculture Techniques

The application of *Bacillus* species in aquaculture is growing rapidly, especially in countries where intensive systems for farming of fish and shellfish are utilised [23-24,72]. *Bacilli* are used as components of biocontrol products which are often composed of mixtures of species, which are able to exert a range of beneficial effects on aquaculture systems [24,72]. They are ubiqui‐ tous in sediments and are naturally ingested by animals [5]. An advantage of using *Bacillus spp.* is that they are not generally involved in horizontal gene transfer processes with Gramnegative organisms such as *Vibrio* and *Aeromonas spp.* and are thus unlikely to acquire genes for antibiotic resistance or virulence from these species [5]. Other key positive characteristics of this genus are the ability to replicate rapidly, tolerate a multitude of environmental condi‐ tions and provide a broad range of beneficial effects that can improve aquaculture productivity [24,27]. Additionally, the ability of *Bacilli* to sporulate enables downstream processing and formulation of shelf stable spore based products [88]. Many spore forming *Bacilli* are sold worldwide as components of products for human and animal use, including *B. coagulans*, *B. subtilis*, *B. clausii*, *B. cereus* and *B. toyoi* [23].

Several studies have demonstrated the application of *Bacillu*s based products in aquaculture. *Bacillus* strain IP5832 spores fed to turbot larvae resulted in a decrease in the *Vibrionaceae* population with significant improvement in weight gain and survival of the larvae [19]. In a further study it was reported that a *Bacillus spp.* improved food absorption by enhancing protease levels, decreased the number of pathogenic bacteria in the system and improved turbot larval growth [77]. The survival and net production of channel catfish was improved in a farm trial using a mixed culture of *Bacillus*, but the mode of action was not specified [96]. It was reported that *Penaeus monodon* larvae fed with *Bacillus* S11 fortified *Artemia* had significantly reduced development times and fewer disease problems than larvae reared in the absence of the *Bacillus* strain. When challenged with a pathogenic *V. harveyi* strain D331, survival was also significantly improved in treated groups compared to untreated controls [97]. It was also concluded, based on studies on several farms in Indonesia that the use of *Bacillus* in penaeid culture ponds enhanced the production of shrimps by preventing mortality normally caused by luminescent *Vibrio spp.* [61]*.*

stress, spores are attractive for commercial application as they can endure harsh processing steps during production and are resilient to fluctuations in systems where they are applied, thus ensuring better survival and efficacy than vegetative cells [23]. Products containing spores can be stored in a stable form for long periods under challenging conditions normally prevalent on aquaculture farms [24,109]. *Bacillus* spores are found in the bottom of ponds, lakes and rivers and many aquatic species will naturally ingest these microbes. They generally exist in symbiotic relationships with their host [24]. Their ability to germinate selectively in response to external triggers is advantageous for application as biological agents in aquaculture, as they have the ability to recover the characteristics of a metabolically active cell in response to specific nutrients when these effects are required [108,110]. Lalloo *et al.*[88] showed that a *Bacillus* spore concentrate and powder blend were stable over a 42-day test period without significant loss in viability of spores, while final product formulations were stable for at least two years.

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**6. Isolation, screening and selection of candidate biological treatment**

shrimps were able to cope with the presence of the putative probiotics.

When selecting desirable biological agents enrichment techniques that make it possible to exploit the differential characteristics of target isolates in mixed microbial populations

**6.1. Isolation of biological agents**

There is an elegant logic in isolating putative biological agents from the host or the environment in which the agents are likely to exert a beneficial effect, but there is no unequivocal indication that these isolates perform better than isolates completely alien to the cultured species or originating from a different habitat [26]. A combination of methods and incubation conditions need to be used to achieve pure cultures of target organisms. To an extent, the range of media to be used is governed by personal choice and experience [12]. Many bacteria that are residents of soil and aquatic habitats low in nutrients have difficulty growing in rich media. Also, many potential contaminants cannot compete in dilute media, so the limitation in nutrient availa‐ bility becomes a selective factor. In order to appropriately select biological agents it is essential to understand the mechanisms of action and to define selection criteria for potential microbes. A classical screening and selection rationale may include collection of background informa‐ tion, acquisition of isolates, purification of isolates and evaluation based on pre-determined criteria for both *in vitro* and *in vivo* environments [71]. Good pre-selection criteria can include the viability of the potential probiotic within the host and/or within its culture environment, adherence to host surfaces, the ability to prevent infection by pathogenic bacteria and ability to utilise waste ions. Other selection criteria include biosafety considerations, methods of production and processing, the method of administering the probiotic and the robustness of the biological agent in the environment where the microorganisms are expected to be active. Possible pathogenicity to different life stages of the target species should also be considered. Verschuere *et al.* [26] tested their probiotics on *Artemia* to verify that the defence systems of the

**agents**

*Bacillus spp.* also contribute to nitrogen removal in spite of the classical belief that this process is predominated by autotrophic bacteria [55,72,93,98-102]. Some members of this group, such as *B. subtilis* and *B. cereus,* are able to grow under aerobic, facultative aerobic and anaerobic conditions, allowing for switches in nitrogen metabolism that facilitate both nitrification and denitrification [86,93,103]. The pattern of nitrite metabolism by *B. subtilis* I-41 was demon‐ strated as exceptional among strains which showed switching of nitrite and nitrate metabolism [55]. Nitrite oxidation might thus be common, rather than the exception, in heterotrophic bacteria such as *Bacillus spp.* [86]. The reduction of phosphate concentration in *C. carpio* culture systems has also been demonstrated through addition of *Bacillus* species [72]. The improve‐ ment in bio-availability of bound phosphate, through solubilisation, is also thought to facilitate removal of phosphate and reduce the propensity of algal blooms [60,104].


**Table 2.** Summary of studies investigating the application of *Bacillus* based biological treatments.

*Bacillus spp.* have the ability to form endospores which are rigid structures that are capable of surviving under harsh conditions. Spores are considered metabolically inert, but can be used as biological agents due to the many advantages of this form over vegetative cells. These include their higher resistance to external factors such as mechanical force, desiccation, solar radiation and high temperatures [108]. As a consequence of this resistance to environmental stress, spores are attractive for commercial application as they can endure harsh processing steps during production and are resilient to fluctuations in systems where they are applied, thus ensuring better survival and efficacy than vegetative cells [23]. Products containing spores can be stored in a stable form for long periods under challenging conditions normally prevalent on aquaculture farms [24,109]. *Bacillus* spores are found in the bottom of ponds, lakes and rivers and many aquatic species will naturally ingest these microbes. They generally exist in symbiotic relationships with their host [24]. Their ability to germinate selectively in response to external triggers is advantageous for application as biological agents in aquaculture, as they have the ability to recover the characteristics of a metabolically active cell in response to specific nutrients when these effects are required [108,110]. Lalloo *et al.*[88] showed that a *Bacillus* spore concentrate and powder blend were stable over a 42-day test period without significant loss in viability of spores, while final product formulations were stable for at least two years.

#### **6. Isolation, screening and selection of candidate biological treatment agents**

There is an elegant logic in isolating putative biological agents from the host or the environment in which the agents are likely to exert a beneficial effect, but there is no unequivocal indication that these isolates perform better than isolates completely alien to the cultured species or originating from a different habitat [26]. A combination of methods and incubation conditions need to be used to achieve pure cultures of target organisms. To an extent, the range of media to be used is governed by personal choice and experience [12]. Many bacteria that are residents of soil and aquatic habitats low in nutrients have difficulty growing in rich media. Also, many potential contaminants cannot compete in dilute media, so the limitation in nutrient availa‐ bility becomes a selective factor. In order to appropriately select biological agents it is essential to understand the mechanisms of action and to define selection criteria for potential microbes. A classical screening and selection rationale may include collection of background informa‐ tion, acquisition of isolates, purification of isolates and evaluation based on pre-determined criteria for both *in vitro* and *in vivo* environments [71]. Good pre-selection criteria can include the viability of the potential probiotic within the host and/or within its culture environment, adherence to host surfaces, the ability to prevent infection by pathogenic bacteria and ability to utilise waste ions. Other selection criteria include biosafety considerations, methods of production and processing, the method of administering the probiotic and the robustness of the biological agent in the environment where the microorganisms are expected to be active. Possible pathogenicity to different life stages of the target species should also be considered. Verschuere *et al.* [26] tested their probiotics on *Artemia* to verify that the defence systems of the shrimps were able to cope with the presence of the putative probiotics.

#### **6.1. Isolation of biological agents**

protease levels, decreased the number of pathogenic bacteria in the system and improved turbot larval growth [77]. The survival and net production of channel catfish was improved in a farm trial using a mixed culture of *Bacillus*, but the mode of action was not specified [96]. It was reported that *Penaeus monodon* larvae fed with *Bacillus* S11 fortified *Artemia* had significantly reduced development times and fewer disease problems than larvae reared in the absence of the *Bacillus* strain. When challenged with a pathogenic *V. harveyi* strain D331, survival was also significantly improved in treated groups compared to untreated controls [97]. It was also concluded, based on studies on several farms in Indonesia that the use of *Bacillus* in penaeid culture ponds enhanced the production of shrimps by preventing mortality

*Bacillus spp.* also contribute to nitrogen removal in spite of the classical belief that this process is predominated by autotrophic bacteria [55,72,93,98-102]. Some members of this group, such as *B. subtilis* and *B. cereus,* are able to grow under aerobic, facultative aerobic and anaerobic conditions, allowing for switches in nitrogen metabolism that facilitate both nitrification and denitrification [86,93,103]. The pattern of nitrite metabolism by *B. subtilis* I-41 was demon‐ strated as exceptional among strains which showed switching of nitrite and nitrate metabolism [55]. Nitrite oxidation might thus be common, rather than the exception, in heterotrophic bacteria such as *Bacillus spp.* [86]. The reduction of phosphate concentration in *C. carpio* culture systems has also been demonstrated through addition of *Bacillus* species [72]. The improve‐ ment in bio-availability of bound phosphate, through solubilisation, is also thought to facilitate

removal of phosphate and reduce the propensity of algal blooms [60,104].

*Bacillus spp. C. carpio* In water [72] *Bacillus* strain IP5832 Turbot larvae In water [19]

**Table 2.** Summary of studies investigating the application of *Bacillus* based biological treatments.

**Identity of probiotic Used on Method of application Reference** *Bacillus* sp. S11 *Penaeus monodon* Premixed with feed [105] *Bacillus* sp. 48 *Centropomus undecimalis* Added to water [106] *Bacillus* sp. Penaeids In water [61]

Channel catfish In water [96]

*Brachionus plicatilis* Mixed with water [107]

*Bacillus spp.* have the ability to form endospores which are rigid structures that are capable of surviving under harsh conditions. Spores are considered metabolically inert, but can be used as biological agents due to the many advantages of this form over vegetative cells. These include their higher resistance to external factors such as mechanical force, desiccation, solar radiation and high temperatures [108]. As a consequence of this resistance to environmental

normally caused by luminescent *Vibrio spp.* [61]*.*

184 Sustainable Aquaculture Techniques

*B. megaterium, B. polymyxa, B. licheniformis*, *B. subtilis*

Mixed culture, mostly *Bacillus*

*spp.*

When selecting desirable biological agents enrichment techniques that make it possible to exploit the differential characteristics of target isolates in mixed microbial populations should be applied. *Bacillus spp.* are isolated almost ubiquitously from soil, water, mud, sediment, dust, air and the surfaces and organs of aquatic animals [23]. They have been isolated from fish, crustaceans, bivalves and shrimps and have been found in the micro‐ flora of the gills, skin and intestinal tract [19,24]. One effective strategy being used in developing countries is the isolation of *Bacillus spp.* from commercial ponds and then using selected isolates as commercial products [24]. *Bacilli* are classified as endospore forming Gram-positive rods and cocci and isolation procedures must selectively enrich for these organisms while excluding other genera in the same group. In one study, methods used for isolating various *Bacillus* strains were based mainly on the resistance of their endo‐ spores to elevated temperatures [111]. The technique used involved blending of samples with an enrichment medium, which also induced vegetative cells to sporulate, followed by incubation to allow formation of mature spores in large quantities. The isolation involved heat treatment for the selection of spores from *Bacillus* species. Ethanol is also a useful disinfectant and dehydration agent to use for isolation of *Bacillus* strains as its application kills vegetative cells, whereas the more resistant endospores survive. The resistance of *Bacilli* to the antibiotic polymyxin B also enables use of this antibiotic for the selection of this group of bacteria whilst eliminating most Gram-negative bacteria. Once selected, cells can be characterised by their morphology, typically using microscopic techniques, by use of gram staining and by quantification of the activity of enzymes such as catalase [111].

growth of the *Aer. hydrophila*. Based on co-culture data, competitive exclusion through an intrinsically higher growth rate and competitive uptake of essential nutrients was identified as the mode of action. Co-cultivation of *B. cereus* with *Aer. hydrophila* resulted in a 70% reduction in the cell density of the pathogenic organism in a remarkably short time period. These findings confirmed previous work where a decline in pathogen levels was demonstrated in both *in vitro* and *in vivo* studies when *B. cereus* was administered as a biological agent [72]. Further studies investigated the effect of iron availability on pathogen growth and demonstrated the superior efficiency of *B. cereus* in assimilating iron, resulting in a decline in pathogen levels in

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In aquaculture, bioremediation or bioaugmentation is an important selection criterion, particularly under conditions that mimic the application environment [5]. While some studies have reported screening strategies to select for the bioremediation capabilities of potential aquaculture biological agents, this area has regrettably not been well reported to date [27,72]. Recent studies by Lalloo *et al.* [72] described methodology applied for the selection of *Bacillus*

Once candidate biological agents are selected, proper identification and safety assessment is an important requirement prior to application *in vivo*. Identification can be performed using techniques such as 16S RNA sequence homology. Where close sequence homology is found between species of potentially dangerous genera, additional assessment may be necessary. Lalloo *et al.* [72] demonstrated that their *B. cereus* isolate was negative for anthrax toxins and did not contain the anthrax virulence plasmids pXO1, pXO2 or the *B. cereus* enterotoxin. These studies were necessitated by the high sequence homology found between *Bacillus* species. Toxicity towards the cultured species can also be employed in screening strategies. As an example, Austin and Austin [12] tested their candidate biological agent by injection into Atlantic salmon followed by histopathological examination of the kidneys, spleen and

Once candidate biological agents have been selected, the next important step is confirmation of observed efficacy using *in vivo* tests. The use of small scale model *in vivo* systems is a cost effective method that allows more certainty in selection of candidate biological agents [26,94]. These tests may measure various effects, including antagonism, by including an experimental infection with a representative pathogen. Pathogens can be administered via the diet, through immersion, by injection or via the culture water [123]. To determine the effects of a specific bacterial strain on a cultured organism, the elimination of other microbes from the culture system may be necessary [124]. This approach can also be used to examine other effects on water quality and the impact on other trophic levels, such as algae [94-95,125]. With *in vivo* challenge tests, changes in population dynamics of the antagonist and the pathogen as well as other effects on the culture system should be studied. Of importance are the unintended negative effects on the target species and interference with filtration efficiency in reticulated culture systems [26,123]. As an example, in an oyster culture system, a decrease in the level of the pathogen *V. tubiashii* was observed when an *Aeromonas* probiotic strain was added together

*spp*. based on their ability to utilise ammonia, nitrate, nitrite and phosphate ions.

**6.3.** *In vivo* **validation of the efficacy of putative biological agents**

iron deficient medium. [88].

muscles.

#### **6.2.** *In vitro* **screening and selection of aquaculture biological agents**

To appropriately select biological agents it is essential to understand the mechanisms of action and to define selection criteria for potential probiotics [112]. Many bacteria have been exploited as biological agents but their selection has been based mainly on empirical observations rather than scientific data [71].

A common protocol for screening candidate biological agents is to perform *in vitro* antagonism tests, in which pathogens are exposed to antagonists in culture medium [75,80,113-116]. Assays for the production of inhibitory compounds and siderophores, or the competition for nutrients, are some common strategies that have also been used [75,80,117-119]. Results of *in vitro* antagonism tests should however be interpreted with caution as growth media and conditions can influence the effects observed which may differ from the actual activity *in vivo* [80,120]. The pre-selection of candidate probionts based on *in vitro* antagonism tests has however led to the discovery of many effective probionts and is a useful first step in selection [116]. The use of the target organism in the screening procedures provides a stronger basis for selection of antagonists [26]. The target species should be challenged under normal or stress conditions with the candidate biological agent. Growth inhibition may not always be a consequence of the production of inhibitory substances such as antibiotics, as inhibition caused by other mechanisms must also be considered during *in vitro* screening tests [121-122]. As an example Lalloo *et al.* [88] investigated the mode of action of a novel *B. cereus*isolate for the inhibition of pathogenic *Aer. hydrophila*. The production of antimicrobial compounds was excluded as the mode of action based on the absence of growth inhibition of *Aer. hydrophila* by intracellular or extracellular fractions of *B. cereus.* In contrast, actively growing *B. cereus* cells inhibited the growth of the *Aer. hydrophila*. Based on co-culture data, competitive exclusion through an intrinsically higher growth rate and competitive uptake of essential nutrients was identified as the mode of action. Co-cultivation of *B. cereus* with *Aer. hydrophila* resulted in a 70% reduction in the cell density of the pathogenic organism in a remarkably short time period. These findings confirmed previous work where a decline in pathogen levels was demonstrated in both *in vitro* and *in vivo* studies when *B. cereus* was administered as a biological agent [72]. Further studies investigated the effect of iron availability on pathogen growth and demonstrated the superior efficiency of *B. cereus* in assimilating iron, resulting in a decline in pathogen levels in iron deficient medium. [88].

should be applied. *Bacillus spp.* are isolated almost ubiquitously from soil, water, mud, sediment, dust, air and the surfaces and organs of aquatic animals [23]. They have been isolated from fish, crustaceans, bivalves and shrimps and have been found in the micro‐ flora of the gills, skin and intestinal tract [19,24]. One effective strategy being used in developing countries is the isolation of *Bacillus spp.* from commercial ponds and then using selected isolates as commercial products [24]. *Bacilli* are classified as endospore forming Gram-positive rods and cocci and isolation procedures must selectively enrich for these organisms while excluding other genera in the same group. In one study, methods used for isolating various *Bacillus* strains were based mainly on the resistance of their endo‐ spores to elevated temperatures [111]. The technique used involved blending of samples with an enrichment medium, which also induced vegetative cells to sporulate, followed by incubation to allow formation of mature spores in large quantities. The isolation involved heat treatment for the selection of spores from *Bacillus* species. Ethanol is also a useful disinfectant and dehydration agent to use for isolation of *Bacillus* strains as its application kills vegetative cells, whereas the more resistant endospores survive. The resistance of *Bacilli* to the antibiotic polymyxin B also enables use of this antibiotic for the selection of this group of bacteria whilst eliminating most Gram-negative bacteria. Once selected, cells can be characterised by their morphology, typically using microscopic techniques, by use of gram staining and by quantification of the activity of enzymes such as catalase [111].

**6.2.** *In vitro* **screening and selection of aquaculture biological agents**

than scientific data [71].

186 Sustainable Aquaculture Techniques

To appropriately select biological agents it is essential to understand the mechanisms of action and to define selection criteria for potential probiotics [112]. Many bacteria have been exploited as biological agents but their selection has been based mainly on empirical observations rather

A common protocol for screening candidate biological agents is to perform *in vitro* antagonism tests, in which pathogens are exposed to antagonists in culture medium [75,80,113-116]. Assays for the production of inhibitory compounds and siderophores, or the competition for nutrients, are some common strategies that have also been used [75,80,117-119]. Results of *in vitro* antagonism tests should however be interpreted with caution as growth media and conditions can influence the effects observed which may differ from the actual activity *in vivo* [80,120]. The pre-selection of candidate probionts based on *in vitro* antagonism tests has however led to the discovery of many effective probionts and is a useful first step in selection [116]. The use of the target organism in the screening procedures provides a stronger basis for selection of antagonists [26]. The target species should be challenged under normal or stress conditions with the candidate biological agent. Growth inhibition may not always be a consequence of the production of inhibitory substances such as antibiotics, as inhibition caused by other mechanisms must also be considered during *in vitro* screening tests [121-122]. As an example Lalloo *et al.* [88] investigated the mode of action of a novel *B. cereus*isolate for the inhibition of pathogenic *Aer. hydrophila*. The production of antimicrobial compounds was excluded as the mode of action based on the absence of growth inhibition of *Aer. hydrophila* by intracellular or extracellular fractions of *B. cereus.* In contrast, actively growing *B. cereus* cells inhibited the

In aquaculture, bioremediation or bioaugmentation is an important selection criterion, particularly under conditions that mimic the application environment [5]. While some studies have reported screening strategies to select for the bioremediation capabilities of potential aquaculture biological agents, this area has regrettably not been well reported to date [27,72]. Recent studies by Lalloo *et al.* [72] described methodology applied for the selection of *Bacillus spp*. based on their ability to utilise ammonia, nitrate, nitrite and phosphate ions.

Once candidate biological agents are selected, proper identification and safety assessment is an important requirement prior to application *in vivo*. Identification can be performed using techniques such as 16S RNA sequence homology. Where close sequence homology is found between species of potentially dangerous genera, additional assessment may be necessary. Lalloo *et al.* [72] demonstrated that their *B. cereus* isolate was negative for anthrax toxins and did not contain the anthrax virulence plasmids pXO1, pXO2 or the *B. cereus* enterotoxin. These studies were necessitated by the high sequence homology found between *Bacillus* species. Toxicity towards the cultured species can also be employed in screening strategies. As an example, Austin and Austin [12] tested their candidate biological agent by injection into Atlantic salmon followed by histopathological examination of the kidneys, spleen and muscles.

#### **6.3.** *In vivo* **validation of the efficacy of putative biological agents**

Once candidate biological agents have been selected, the next important step is confirmation of observed efficacy using *in vivo* tests. The use of small scale model *in vivo* systems is a cost effective method that allows more certainty in selection of candidate biological agents [26,94]. These tests may measure various effects, including antagonism, by including an experimental infection with a representative pathogen. Pathogens can be administered via the diet, through immersion, by injection or via the culture water [123]. To determine the effects of a specific bacterial strain on a cultured organism, the elimination of other microbes from the culture system may be necessary [124]. This approach can also be used to examine other effects on water quality and the impact on other trophic levels, such as algae [94-95,125]. With *in vivo* challenge tests, changes in population dynamics of the antagonist and the pathogen as well as other effects on the culture system should be studied. Of importance are the unintended negative effects on the target species and interference with filtration efficiency in reticulated culture systems [26,123]. As an example, in an oyster culture system, a decrease in the level of the pathogen *V. tubiashii* was observed when an *Aeromonas* probiotic strain was added together with the growth media of the probiotic strain. The putative antagonist itself could not however be detected in the culture after four days. This example shows the importance of measuring interactions, including mortality or disease, after experimental infection and to include appropriate controls in study designs [116]. In another study, the efficacy of a *B. cereus* isolate was demonstrated *in vivo* based on predefined criteria. In addition to this, the tolerance to, and functionality across, a range of physiological conditions in systems used to rear *C. carpio* was also proven [27,92]. Furthermore, the *in vivo* treatment did not result in a negative impact on oxygen sufficiency, growth or health of the specimens, which are all important considerations for application of biological agents [21].

**7.1. High cell density cultivation of** *Bacillus spp***.**

production of *Bacillus spp.* and their spores [145].

synthesis of commercially useful metabolites in this species [128-130].

Although *Bacillus* biological agents are widely used in aquaculture, there are limited studies on their production and little is known about the impact of nutrient supplementation on highdensity production of bacterial spores by fermentation [134-135]. Carbon and nitrogen sources generally play a dominant role in the productivity of a fermentation process as these nutrients are directly linked with the production of the biological agent [136-137]. According to current understanding, the development pathway leading from a vegetative cell to a spore is triggered by depletion of carbon, nitrogen, phosphate or essential micronutrients [138-140]. A suitable medium must thus support vegetative growth and also the production of spores [141]. It has been widely documented that nutrient sources influence the growth, spore production and

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The type of carbon source and the carbon to nitrogen ratio play an important role in microbial growth [142]. It has been observed that *B. subtilis* uses glucose as its major carbon source and the efficiency of carbon utilisation towards biomass formation is low when the glucose concentration exceeds ~10 g/l in batch culture [143]. The production of by-products is increased in the presence of excess glucose, resulting in reduced yields of biomass, which is undesirable when producing biological agents [143]. Certain over-flow metabolites can also inhibit cell growth [143]. Monteiro *et al.* [134] also observed that an increase in glucose concentration up to 5 g/l led to an increase in the vegetative cell and spore concentration of *B. subtilis*, while higher sugar concentrations inhibited sporulation. It is therefore of great importance to regulate carbon availability to optimise growth and sporulation parameters precisely [127]. It is also noteworthy that the glucose consumption rate depends significantly on factors such as pH and oxygen sufficiency. Mass transfer parameters such as agitation and aeration are thus important in maximising vegetative cell growth, without inducing a premature onset of sporulation [144]. In most studies, glucose was found to be the best carbon substrate for the

Various protein substrates have been tested for the growth and synthesis of commercially useful metabolites by *Bacillus spp.* [27,128-130,146]. It has furthermore been widely document‐ ed that protein sources influence spore production in this species [141,147-149]. Commonly used nitrogen based nutrient sources include a wide range of peptones, extracts and hydro‐ lysates, many of which are too expensive for industrial scale manufacture of large volume products and have negative market acceptance if they contain animal by-products [143,150]. Media formulated to support high productivities are thus predominantly formulated with inexpensive complex nitrogen sources [137,151]. Although yeast extract, peptones and meat extracts have been shown to improve bacterial growth rate as they are good sources of protein, vitamins and co-factors, there have been reports suggesting that metabolite production, and particularly spore production, are often better when corn steep liquor (CSL) is used [128-129, 135,141,146,152-153]. CSL contains a wide range of macro and micro elements known to be important for spore production [154]. Lalloo *et al.* [27] demonstrated an attractive material cost of production at the optimal supplementation level for CSL, reducing the overall production cost by using this inexpensive source of nitrogen. They also demonstrated that CSL was a preferred nutrient substrate for the production of *Bacillus* spores, in comparison to conven‐

#### **6.4. Other considerations during selection of biological agents**

Strains showing well-established biological effects in *in vitro* and *in vivo* studies need to be tested for their suitability to real world biological treatment applications. Additional criteria such as biosafety considerations, methods of production and processing, the method of administering the probiotic and the environmental conditions where the microorganisms are expected to be active are important considerations [112]. An isolate cannot be used as a probiotic unless it has been confirmed as non-pathogenic to the host, to humans and to the environment [26]. Relevant legislation, if any, should be taken into account before commence‐ ment of commercial application. Finally, a cost-benefit analysis will determine whether the probiotics can be applied in practice or not [26].

#### **7. Bio-production of biological agents**

Large scale production of probiotics is an essential step towards application in the aquaculture industry as production cost is an important consideration in the development of commercially relevant biological products [126]. The cultivation of microorganisms at a large scale is influenced by various factors such as the composition of the media, as well as physical and chemical variables [127]. It has been widely documented that nutrient sources influence the growth, spore production, and synthesis of commercially useful metabolites in *Bacillus spp.* [128-130]. The nutritional and physicochemical parameters of the fermentation process thus need to be optimized, with use of economical and commercially available media a key consideration to reduce costs of bio-production [131-132]. Media formulation and optimization are key considerations for the production of affordable aquaculture biological agents, yet limited progress has been made in this area to satisfy market opportunities for affordable commercial aquaculture products [126,77]. With increased cell yield, productivity and cost reduction, the fermentation production process can be made feasible and economically attractive for application of aquaculture products [128]. Another key consideration is that scale up of production must not compromise product efficacy or amenability to stabilization and formulation [133]. Genetic engineering provides an option for improvement of biological agents; however public resistance to genetically modified organisms, particularly when associated with food production is an important consideration before adopting this approach.

#### **7.1. High cell density cultivation of** *Bacillus spp***.**

with the growth media of the probiotic strain. The putative antagonist itself could not however be detected in the culture after four days. This example shows the importance of measuring interactions, including mortality or disease, after experimental infection and to include appropriate controls in study designs [116]. In another study, the efficacy of a *B. cereus* isolate was demonstrated *in vivo* based on predefined criteria. In addition to this, the tolerance to, and functionality across, a range of physiological conditions in systems used to rear *C. carpio* was also proven [27,92]. Furthermore, the *in vivo* treatment did not result in a negative impact on oxygen sufficiency, growth or health of the specimens, which are all important considerations

Strains showing well-established biological effects in *in vitro* and *in vivo* studies need to be tested for their suitability to real world biological treatment applications. Additional criteria such as biosafety considerations, methods of production and processing, the method of administering the probiotic and the environmental conditions where the microorganisms are expected to be active are important considerations [112]. An isolate cannot be used as a probiotic unless it has been confirmed as non-pathogenic to the host, to humans and to the environment [26]. Relevant legislation, if any, should be taken into account before commence‐ ment of commercial application. Finally, a cost-benefit analysis will determine whether the

Large scale production of probiotics is an essential step towards application in the aquaculture industry as production cost is an important consideration in the development of commercially relevant biological products [126]. The cultivation of microorganisms at a large scale is influenced by various factors such as the composition of the media, as well as physical and chemical variables [127]. It has been widely documented that nutrient sources influence the growth, spore production, and synthesis of commercially useful metabolites in *Bacillus spp.* [128-130]. The nutritional and physicochemical parameters of the fermentation process thus need to be optimized, with use of economical and commercially available media a key consideration to reduce costs of bio-production [131-132]. Media formulation and optimization are key considerations for the production of affordable aquaculture biological agents, yet limited progress has been made in this area to satisfy market opportunities for affordable commercial aquaculture products [126,77]. With increased cell yield, productivity and cost reduction, the fermentation production process can be made feasible and economically attractive for application of aquaculture products [128]. Another key consideration is that scale up of production must not compromise product efficacy or amenability to stabilization and formulation [133]. Genetic engineering provides an option for improvement of biological agents; however public resistance to genetically modified organisms, particularly when associated with food production is an important consideration before adopting this approach.

for application of biological agents [21].

188 Sustainable Aquaculture Techniques

probiotics can be applied in practice or not [26].

**7. Bio-production of biological agents**

**6.4. Other considerations during selection of biological agents**

Although *Bacillus* biological agents are widely used in aquaculture, there are limited studies on their production and little is known about the impact of nutrient supplementation on highdensity production of bacterial spores by fermentation [134-135]. Carbon and nitrogen sources generally play a dominant role in the productivity of a fermentation process as these nutrients are directly linked with the production of the biological agent [136-137]. According to current understanding, the development pathway leading from a vegetative cell to a spore is triggered by depletion of carbon, nitrogen, phosphate or essential micronutrients [138-140]. A suitable medium must thus support vegetative growth and also the production of spores [141]. It has been widely documented that nutrient sources influence the growth, spore production and synthesis of commercially useful metabolites in this species [128-130].

The type of carbon source and the carbon to nitrogen ratio play an important role in microbial growth [142]. It has been observed that *B. subtilis* uses glucose as its major carbon source and the efficiency of carbon utilisation towards biomass formation is low when the glucose concentration exceeds ~10 g/l in batch culture [143]. The production of by-products is increased in the presence of excess glucose, resulting in reduced yields of biomass, which is undesirable when producing biological agents [143]. Certain over-flow metabolites can also inhibit cell growth [143]. Monteiro *et al.* [134] also observed that an increase in glucose concentration up to 5 g/l led to an increase in the vegetative cell and spore concentration of *B. subtilis*, while higher sugar concentrations inhibited sporulation. It is therefore of great importance to regulate carbon availability to optimise growth and sporulation parameters precisely [127]. It is also noteworthy that the glucose consumption rate depends significantly on factors such as pH and oxygen sufficiency. Mass transfer parameters such as agitation and aeration are thus important in maximising vegetative cell growth, without inducing a premature onset of sporulation [144]. In most studies, glucose was found to be the best carbon substrate for the production of *Bacillus spp.* and their spores [145].

Various protein substrates have been tested for the growth and synthesis of commercially useful metabolites by *Bacillus spp.* [27,128-130,146]. It has furthermore been widely document‐ ed that protein sources influence spore production in this species [141,147-149]. Commonly used nitrogen based nutrient sources include a wide range of peptones, extracts and hydro‐ lysates, many of which are too expensive for industrial scale manufacture of large volume products and have negative market acceptance if they contain animal by-products [143,150]. Media formulated to support high productivities are thus predominantly formulated with inexpensive complex nitrogen sources [137,151]. Although yeast extract, peptones and meat extracts have been shown to improve bacterial growth rate as they are good sources of protein, vitamins and co-factors, there have been reports suggesting that metabolite production, and particularly spore production, are often better when corn steep liquor (CSL) is used [128-129, 135,141,146,152-153]. CSL contains a wide range of macro and micro elements known to be important for spore production [154]. Lalloo *et al.* [27] demonstrated an attractive material cost of production at the optimal supplementation level for CSL, reducing the overall production cost by using this inexpensive source of nitrogen. They also demonstrated that CSL was a preferred nutrient substrate for the production of *Bacillus* spores, in comparison to conven‐ tional nutrient substrates. The use of CSL resulted in a higher spore concentration, productivity and spore yield on protein, in comparison to yeast extract and nutrient broth. Apart from the nature of protein source, the protein concentration in culture media also affects growth and spore production [155]. *B. subtilis* spore productivity increased, but spore yield decreased, with an increase in CSL concentration [149]. The yield of spores on carbohydrate increased with increasing concentration of CSL, suggesting that a higher protein to carbon ratio was preferable for production of *B. subtilis* and *B. licheniformis* spores [143,156]. High levels of CSL supple‐ mentation (~60 g/l) however resulted in slow growth, cell lysis and poor spore formation as sporulation efficiency is known to be low following poor growth [141,157-158]. Sporulation takes longer in high cell density cultivations, thus resulting in a compromise between spore concentration and productivity [138]. A major advantage of CSL is that it is available in an ultra-filtered phytase treated variant, which is cost competitive and offers processing advan‐ tages in both up-stream and down-stream process unit operations [88,156,158]. Precipitation and mass transfer issues are reduced when using this form of CSL for high cell density cultivation, due to hydrolysis of phytic acid and the removal of solids through the ultrafiltration process [134,138]. As this CSL is not spray dried, as is typical of the conventional type, degradation of vitamins and key nutrients is reduced which improves growth performance [129]. Of peripheral benefit is the use of a corn wet processing waste which improves value addition and reduces environmental pollution normally caused by such materials [128].

**8. Application of biological agents**

factors i.e. (i) *F0*

*F1*

A key challenge for usefulness of biological agents is the survival of the micro-organisms in the environment to which they are applied. Biological agents must thus be tolerant to the prevailing environmental conditions in which they are expected to perform, often dictated by the species being cultured for a specific aquaculture application [49]. Several methods of addition of biological agents to the host or its ambient environment exist, with each application method presenting unique challenges to the survival and efficacy of the biological agent [26,71,118,165]. A biological agent must provide actual benefit to the host, be able to survive in the environment of the intended application and should be stable and viable for prolonged storage and in the field [77]. Other factors such as natural deterioration and washout of the biological agent may necessitate the on-going addition of the treatments to maintain their positive effect [26]. Information on the robustness and functionality of biological agents in response to environmental conditions such as salinity, pH and temperature are however limited. Lalloo *et al.* [92] demonstrated that temperature had a significant influence on germination, specific growth rate and increase in cell number of *B. cereus* in shake-flask cultures, whilst salinity and pH did not have a measurable effect on growth. Changes in the above conditions influence spore germination, cell growth, survival and the functionality of *Bacillus spp.* as aquaculture biological agents [166]. A key consideration for the application of *Bacillus* based biological agents is that the spores need to germinate and grow, such that the characteristics of a metabolically active cell can be recovered [110]. The replication of vegetative cells can further enhance the bioactivity in the intended application. Spores lose their dormant properties when conditions are favourable in the presence of specific germinants such as nutrients [167]. However, the germinant has to penetrate the outer coat and cortex layers of the spore before coming into contact with specific germinant receptors [110,168]. The germi‐ nation of spores is a sensitive transition state involving the initiation of metabolism [169].

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For the application of spores as aquaculture biological agents, determination of their func‐ tionality as antagonists to disease or for improvement in water quality under the physiological ranges to be encountered in the aquaculture system is thus an important requisite [88]. Changes in growth conditions such as temperature constitute a key factor that influences cell growth and survival of *Bacillus spp.* in their habitats. *B. subtilis* has the ability to sustain growth across a wide temperature range from approximately 11ºC to 52ºC [139,170]. When the growth temperature for *B. subtilis* is increased rapidly, changes in gene expression occur, which is known as a heat shock response. A cold shock response is elicited when the temperature is dropped down to 15ºC from 37ºC [166]. *B. cereus* is apparently not well adapted to cold temperatures and the metabolic rate decreases drastically below 13ºC [171]. A useful method for the elucidation of temperature domains for prediction of functionality of a biological agent is by examining conformance of efficacy measures to Arrhenius and Ratkowsky functions [171-172]. The vegetative cells of *B. cereus* are more sensitive to acidic conditions than spores. However, like many other cells, vegetative cells of *B. cereus* have the ability to induce an acid tolerance response [173]. The mechanisms of resistance to acidic conditions involve three

ATPase and glutamate decarboxylase (ii) metabolic modifications and (iii)

protein synthesis to protect and repair macromolecules [173]. *B. cereus* spores were shown to

#### **7.2. Production of spores**

The key challenge in spore production is to maximize sporulation from a high density vegetative cell culture [134,139]. Environmental signals for sporulation include culture density dependant peptides, oxygen availability and limitation of carbon, nitrogen or phosphorous [140]. The life-cycle of a spore forming bacteria consists of four stages i.e. vegetative growth, sporulation, germination and outgrowth [139,159]. Cells enter a sporulation pathway, which involves three differentiating cell types, namely the predivisional cell, mother cell and the forespore, in response to nutrient limitation [160]. The forespore undergoes dehydration, while the cortex is produced between the two membranes that separate the mother cell and the forespore. Eventually the mature spore is released when the mother cell lyses. This mature spore has the ability to remain dormant for long periods of time [160]. The most important sporulation related transcriptional regulator is Spo0A which is phosphorylated via a complex network of interactions in response to nutrient limitation [140,161]. Furthermore, genes in the Res system are induced under anaerobic growth conditions which contribute to the sporulation cascade during oxygen insufficiency [162]. Low phosphate concentration results in the earlier onset of sporulation due to the response of the Pho system to phosphate starvation [162]. Magnesium sulphate, calcium carbonate and phosphate all stimulate sporulation, whereas divalent cations (particularly Ca2+) assist in dehydration and mineralization of the spore [154,161]. According to Monteiro *et al.* [134], the sporulation efficiency for *B. subtilis* was found to be independent of the pH values within the range of 6.9-9.0. For several *Bacillus spp.* sporulation is highly related to O2 supply and it has been reported that non-limited oxygen conditions during the growth phase are important to realise high spore yields [163-164].

#### **8. Application of biological agents**

tional nutrient substrates. The use of CSL resulted in a higher spore concentration, productivity and spore yield on protein, in comparison to yeast extract and nutrient broth. Apart from the nature of protein source, the protein concentration in culture media also affects growth and spore production [155]. *B. subtilis* spore productivity increased, but spore yield decreased, with an increase in CSL concentration [149]. The yield of spores on carbohydrate increased with increasing concentration of CSL, suggesting that a higher protein to carbon ratio was preferable for production of *B. subtilis* and *B. licheniformis* spores [143,156]. High levels of CSL supple‐ mentation (~60 g/l) however resulted in slow growth, cell lysis and poor spore formation as sporulation efficiency is known to be low following poor growth [141,157-158]. Sporulation takes longer in high cell density cultivations, thus resulting in a compromise between spore concentration and productivity [138]. A major advantage of CSL is that it is available in an ultra-filtered phytase treated variant, which is cost competitive and offers processing advan‐ tages in both up-stream and down-stream process unit operations [88,156,158]. Precipitation and mass transfer issues are reduced when using this form of CSL for high cell density cultivation, due to hydrolysis of phytic acid and the removal of solids through the ultrafiltration process [134,138]. As this CSL is not spray dried, as is typical of the conventional type, degradation of vitamins and key nutrients is reduced which improves growth performance [129]. Of peripheral benefit is the use of a corn wet processing waste which improves value addition and reduces environmental pollution normally caused by such materials [128].

The key challenge in spore production is to maximize sporulation from a high density vegetative cell culture [134,139]. Environmental signals for sporulation include culture density dependant peptides, oxygen availability and limitation of carbon, nitrogen or phosphorous [140]. The life-cycle of a spore forming bacteria consists of four stages i.e. vegetative growth, sporulation, germination and outgrowth [139,159]. Cells enter a sporulation pathway, which involves three differentiating cell types, namely the predivisional cell, mother cell and the forespore, in response to nutrient limitation [160]. The forespore undergoes dehydration, while the cortex is produced between the two membranes that separate the mother cell and the forespore. Eventually the mature spore is released when the mother cell lyses. This mature spore has the ability to remain dormant for long periods of time [160]. The most important sporulation related transcriptional regulator is Spo0A which is phosphorylated via a complex network of interactions in response to nutrient limitation [140,161]. Furthermore, genes in the Res system are induced under anaerobic growth conditions which contribute to the sporulation cascade during oxygen insufficiency [162]. Low phosphate concentration results in the earlier onset of sporulation due to the response of the Pho system to phosphate starvation [162]. Magnesium sulphate, calcium carbonate and phosphate all stimulate sporulation, whereas

[154,161]. According to Monteiro *et al.* [134], the sporulation efficiency for *B. subtilis* was found to be independent of the pH values within the range of 6.9-9.0. For several *Bacillus spp.*

conditions during the growth phase are important to realise high spore yields [163-164].

) assist in dehydration and mineralization of the spore

supply and it has been reported that non-limited oxygen

**7.2. Production of spores**

190 Sustainable Aquaculture Techniques

divalent cations (particularly Ca2+

sporulation is highly related to O2

A key challenge for usefulness of biological agents is the survival of the micro-organisms in the environment to which they are applied. Biological agents must thus be tolerant to the prevailing environmental conditions in which they are expected to perform, often dictated by the species being cultured for a specific aquaculture application [49]. Several methods of addition of biological agents to the host or its ambient environment exist, with each application method presenting unique challenges to the survival and efficacy of the biological agent [26,71,118,165]. A biological agent must provide actual benefit to the host, be able to survive in the environment of the intended application and should be stable and viable for prolonged storage and in the field [77]. Other factors such as natural deterioration and washout of the biological agent may necessitate the on-going addition of the treatments to maintain their positive effect [26]. Information on the robustness and functionality of biological agents in response to environmental conditions such as salinity, pH and temperature are however limited. Lalloo *et al.* [92] demonstrated that temperature had a significant influence on germination, specific growth rate and increase in cell number of *B. cereus* in shake-flask cultures, whilst salinity and pH did not have a measurable effect on growth. Changes in the above conditions influence spore germination, cell growth, survival and the functionality of *Bacillus spp.* as aquaculture biological agents [166]. A key consideration for the application of *Bacillus* based biological agents is that the spores need to germinate and grow, such that the characteristics of a metabolically active cell can be recovered [110]. The replication of vegetative cells can further enhance the bioactivity in the intended application. Spores lose their dormant properties when conditions are favourable in the presence of specific germinants such as nutrients [167]. However, the germinant has to penetrate the outer coat and cortex layers of the spore before coming into contact with specific germinant receptors [110,168]. The germi‐ nation of spores is a sensitive transition state involving the initiation of metabolism [169].

For the application of spores as aquaculture biological agents, determination of their func‐ tionality as antagonists to disease or for improvement in water quality under the physiological ranges to be encountered in the aquaculture system is thus an important requisite [88]. Changes in growth conditions such as temperature constitute a key factor that influences cell growth and survival of *Bacillus spp.* in their habitats. *B. subtilis* has the ability to sustain growth across a wide temperature range from approximately 11ºC to 52ºC [139,170]. When the growth temperature for *B. subtilis* is increased rapidly, changes in gene expression occur, which is known as a heat shock response. A cold shock response is elicited when the temperature is dropped down to 15ºC from 37ºC [166]. *B. cereus* is apparently not well adapted to cold temperatures and the metabolic rate decreases drastically below 13ºC [171]. A useful method for the elucidation of temperature domains for prediction of functionality of a biological agent is by examining conformance of efficacy measures to Arrhenius and Ratkowsky functions [171-172]. The vegetative cells of *B. cereus* are more sensitive to acidic conditions than spores. However, like many other cells, vegetative cells of *B. cereus* have the ability to induce an acid tolerance response [173]. The mechanisms of resistance to acidic conditions involve three factors i.e. (i) *F0 F1* ATPase and glutamate decarboxylase (ii) metabolic modifications and (iii) protein synthesis to protect and repair macromolecules [173]. *B. cereus* spores were shown to be tolerant to the salinity and pH extremes typically encountered in the culture of ornamental *C. carpio* [174-175]. It is noteworthy that the efficacy of biological agents to environmental conditions must be assessed in line with the dynamics of the target species and the aquaculture system in response to these physiological ranges. As an example, reduced activity of a biological agent at lower temperature does not necessarily indicate a failure of the biological agent to perform, as lower temperature could translate to a lower intake of feed, waste metabolite generation and pathogen propensity in the aquaculture system.

[3] Robertson LA, Kuenen JG. Combined Heterotrophic Nitrification and Aerobic Deni‐ trification in *Thiospaera pantotropha* and other Bacteria. Antonie van Leeuwenhoek

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[4] Balcazar JL, de Blas I, Ruiz-Zarzuela I, Cunningham D, Vendrell D, Mu´zquiz JL. The

[5] Moriarity DJW. Disease Control in Shrimp Aquaculture with Probiotic Bacteria. In: Bell CR, Brylinsky M, Johnson-Green P. (eds.) Proceedings of the Eighth Internation‐ al Symposium on Microbial Ecology. Atlantic Canada Society for Microbial Ecology

[6] Chavez-Crooker P, Obreque-Contrera J. Bioremediation of Aquaculture Wastes. Cur‐

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#### **9. Future prospects of the technology**

The traditional practise of extensive land based aquaculture is under pressure, due to a limitation in available space, which has led to the increased use of more intensive reticulated systems which also offer the benefit of greater control of physiological culture conditions. While intensive systems offer the advantages of increased stocking densities and higher production throughput, challenges include water quality and increased disease prevalence among others. These are driving the adoption of environmentally friendly solutions that meet consumer expectations and comply with regulatory requirements. Biological solutions provide an attractive option. Issues that require attention to accelerate the adoption of biological solutions include the elucidation of the mode of action of commercial biological products and demonstration of clear cost-benefit advantages for commercial products.

#### **Author details**

Mulalo Edna Nemutanzhela, Yrielle Roets, Neil Gardiner and Rajesh Lalloo\*

\*Address all correspondence to: RLalloo@csir.co.za

CSIR Biosciences, Biomanufacturing Industry Development Centre (BIDC), Pretoria, South Africa

#### **References**


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be tolerant to the salinity and pH extremes typically encountered in the culture of ornamental *C. carpio* [174-175]. It is noteworthy that the efficacy of biological agents to environmental conditions must be assessed in line with the dynamics of the target species and the aquaculture system in response to these physiological ranges. As an example, reduced activity of a biological agent at lower temperature does not necessarily indicate a failure of the biological agent to perform, as lower temperature could translate to a lower intake of feed, waste

The traditional practise of extensive land based aquaculture is under pressure, due to a limitation in available space, which has led to the increased use of more intensive reticulated systems which also offer the benefit of greater control of physiological culture conditions. While intensive systems offer the advantages of increased stocking densities and higher production throughput, challenges include water quality and increased disease prevalence among others. These are driving the adoption of environmentally friendly solutions that meet consumer expectations and comply with regulatory requirements. Biological solutions provide an attractive option. Issues that require attention to accelerate the adoption of biological solutions include the elucidation of the mode of action of commercial biological products and demonstration of clear cost-benefit advantages for commercial products.

metabolite generation and pathogen propensity in the aquaculture system.

Mulalo Edna Nemutanzhela, Yrielle Roets, Neil Gardiner and Rajesh Lalloo\*

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CSIR Biosciences, Biomanufacturing Industry Development Centre (BIDC), Pretoria, South

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\*Address all correspondence to: RLalloo@csir.co.za

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204 Sustainable Aquaculture Techniques


**Chapter 7**

**Application of Biological Agents in Abalone**

**Aquaculture: A South African Perspective**

**1.1. The impact of abalone mariculture on developing economies**

Aquatic animals are nutritionally important for human consumption, as they are an excellent source of proteins, trace elements, and polyunsaturated fatty acids [1]. There has been a significant increase in the demand for an array of both fish and shellfish products as a result of growth in the global population [2]. Fisheries itself, cannot provide sufficient amounts of aquatic products to fulfil the demands of the consumer; therefore, aquaculture provides a crucial alternative resource [1,4]. Aquaculture has become more significant and intensive over the last few decades and is presently the fastest growing food production industry. An average industrial growth of more than 6% in the period between 1985 and 2005 has been reported, with an annual increase of approximately 3.2% per annum during the period up to 2009 [1,3]. Modern aquaculture involves the intensive production of finfish, crustaceans, molluscs, and algal plants under controlled conditions [5]. Aquaculture yields far exceeds that of natural fishing, and provides an effective means for a constant, year round supply for good quality seafood and seafood products [6-8]. The practice of aquaculture not only provides local food security, but also improves the livelihoods of people in many poorly developed coastal

Commercial abalone mariculture has become a thriving, global industry. It has a promising future due to the high prices being paid for abalone, coupled to a worldwide decline in fisheries production because of overfishing and poaching [8,9]. Abalone is one of the most valuable seafood species in the world, whereby demand far exceeds supply, especially in Asian countries such as; Hong Kong, China, Japan, Taiwan and Singapore which are major destina‐

> © 2014 Moodley et al.; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Ghaneshree Moodley, Lethabo Mashigo,

Additional information is available at the end of the chapter

Rajesh Lalloo and Suren Singh

http://dx.doi.org/10.5772/57197

**1. Introduction**

regions [2].

## **Application of Biological Agents in Abalone Aquaculture: A South African Perspective**

Ghaneshree Moodley, Lethabo Mashigo, Rajesh Lalloo and Suren Singh

Additional information is available at the end of the chapter

http://dx.doi.org/10.5772/57197

#### **1. Introduction**

#### **1.1. The impact of abalone mariculture on developing economies**

Aquatic animals are nutritionally important for human consumption, as they are an excellent source of proteins, trace elements, and polyunsaturated fatty acids [1]. There has been a significant increase in the demand for an array of both fish and shellfish products as a result of growth in the global population [2]. Fisheries itself, cannot provide sufficient amounts of aquatic products to fulfil the demands of the consumer; therefore, aquaculture provides a crucial alternative resource [1,4]. Aquaculture has become more significant and intensive over the last few decades and is presently the fastest growing food production industry. An average industrial growth of more than 6% in the period between 1985 and 2005 has been reported, with an annual increase of approximately 3.2% per annum during the period up to 2009 [1,3].

Modern aquaculture involves the intensive production of finfish, crustaceans, molluscs, and algal plants under controlled conditions [5]. Aquaculture yields far exceeds that of natural fishing, and provides an effective means for a constant, year round supply for good quality seafood and seafood products [6-8]. The practice of aquaculture not only provides local food security, but also improves the livelihoods of people in many poorly developed coastal regions [2].

Commercial abalone mariculture has become a thriving, global industry. It has a promising future due to the high prices being paid for abalone, coupled to a worldwide decline in fisheries production because of overfishing and poaching [8,9]. Abalone is one of the most valuable seafood species in the world, whereby demand far exceeds supply, especially in Asian countries such as; Hong Kong, China, Japan, Taiwan and Singapore which are major destina‐

© 2014 Moodley et al.; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

tion markets (6-8,10). Abalone is used primarily as a celebration dish, especially during weddings and other special occasions such as the Chinese New Year [11]. On account of the ever growing demand of live, dried and canned abalone, already high prices of this seafood delicacy continue to escalate.

Chinese population as well as the growth of the Chinese middle class population [4,15]. It has been reported that the total abalone produce reaching markets through harvesting, illegal

Application of Biological Agents in Abalone Aquaculture: A South African Perspective

http://dx.doi.org/10.5772/57197

209

poaching and natural supply, does not meet demand for this seafood delicacy [9,18].

**COUNTRY CULTURE LEGAL HARVEST ILLEGAL HARVEST**

**Table 2.** Global production of abalone indicating world leaders in abalone production, quantity of produce legally

The South African abalone industry continues to establish itself as a premium brand in Asia, and is a good example of mariculture in a developing country. Abalone farming in SA is a relatively new but dynamic industry and has demonstrated a high production capacity [15]. One of the main challenges faced by the SA industry is the loss in revenue experienced due to poaching. Reports suggest that approximately 2000 tonnes are lost to the economy [4]. The abalone mariculture industry started developing in South Africa during the 1990's and has been gaining popularity. As a result, an economic environment whereby abalone aquaculture has become increasingly attractive as a financial investment has been established [17]. Abalone rearing facilities employs an intensive system in which abalone is reared at high densities in

The South African abalone, *Haliotis midae*, locally known as "perlemoen" is the only one of six indigenous species that is of commercial importance [8,22]. The abalone *H. midae*, takes over 30 years to reach a maximum size of 200mm (shell length) in natural habitats [21]. Even under farmed conditions, abalone growth is slow and often varies with size and age [23]. *H. midae* takes approximately 4 to 5 years to reach a marketable size of 100 mm (shell length) before it can be sold between US\$ 34 to 36 per kg on international markets [23,24]. Mariculture of abalone is thus important to ensure market supply and it is for these reasons that alternate

**China** 4500 - - **Taiwan** 3000 - - **South Africa** 600 237 1850 **Japan** 200 2200 536 **USA** 170 0 250 **Australia** 290 5128 1000 **Chile** 200 - - **Mexico** 50 1066 550 **New Zealand** 3 1078 400 **Other** 30 442 110 **Total** 9 043 10 151 4696

harvested and sold, and quantity of product illegally harvested; 2004-2005 data [20].

**Grand total in 2005:** 24 040 tonnes live weight

shore-based aquaculture systems [21].

Abalone (family *Haliotidae*) belongs to a class of marine vetigastropod molluscs, which are distributed along rocky shores and reefs of coastal temperate and tropical waters [11, 12]. The abalone family consists of about 56 species all belonging to the genus *Haliotis* [13,14]. Many members of this family have achieved commercial status as fishery and/or aquaculture species, and are of major economic importance (Table 1). In 2007, it was reported that abalone was supplied to export markets in the following product forms; dried (7%), frozen (24%), live (18%) and canned (51%). Live abalone achieves higher revenues however, it does deem problematic in terms of transportation and related logistics [15]. Due to the demand of this prestigious seafood, supply of abalone is under severe pressure; and has led to the increase in the occur‐ rence of abalone farming facilities around the world.


**Table 1.** Globally farmed abalone species and their location adapted from [16,17].

Cultivation of abalone is widespread in many countries, including USA, Mexico, South Africa, Australia, New Zealand, Japan, Taiwan, China, Ireland, Chile and Iceland [17-20] China is the largest producer in the world with over 300 farms and a total production of approximately 4500 metric tonnes [9]. China, Taiwan and South Africa are considered as the key production powerhouses in the abalone industry (Table 2). China is the highest contributor of live product annually, and is still the major market for abalone produced world-wide [8]. This occurrence is closely related to the economic growth and the increase in personal wealth exhibited by the


Chinese population as well as the growth of the Chinese middle class population [4,15]. It has been reported that the total abalone produce reaching markets through harvesting, illegal poaching and natural supply, does not meet demand for this seafood delicacy [9,18].

tion markets (6-8,10). Abalone is used primarily as a celebration dish, especially during weddings and other special occasions such as the Chinese New Year [11]. On account of the ever growing demand of live, dried and canned abalone, already high prices of this seafood

Abalone (family *Haliotidae*) belongs to a class of marine vetigastropod molluscs, which are distributed along rocky shores and reefs of coastal temperate and tropical waters [11, 12]. The abalone family consists of about 56 species all belonging to the genus *Haliotis* [13,14]. Many members of this family have achieved commercial status as fishery and/or aquaculture species, and are of major economic importance (Table 1). In 2007, it was reported that abalone was supplied to export markets in the following product forms; dried (7%), frozen (24%), live (18%) and canned (51%). Live abalone achieves higher revenues however, it does deem problematic in terms of transportation and related logistics [15]. Due to the demand of this prestigious seafood, supply of abalone is under severe pressure; and has led to the increase in the occur‐

**SPECIES NAME COMMON NAME LOCATION TYPE OF FISHERY** *Haliotis rufescens* Red abalone N. America Farmed/ Recreational

*Haliotis fulgens* Green abalone N. America Wild/Farmed (Mexico) *Haliotis corrugata* Pink abalone N. America Wild/Farmed (Mexico)

*Haliotis rufescens* Red abalone Chile Farmed *Haliotis cracherodii* Black abalone N. America Farmed

*Haliotis kamtschatkana* Pinto abalone N. America Farmed *Haliotis midae* Perlemoen South Africa Wild/Farmed

*Haliotis laevigata* Green-lip abalone S. Australia Wild

*Haliotis roei* Roe's abalone Australia Wild *Haliotis iris* Black footed paua New Zealand Wild

**Table 1.** Globally farmed abalone species and their location adapted from [16,17].

*Haliotis rubra* Black-lip abalone S. Australia Wild/Farmed

*Haliotis diversicolor supertexta* Small abalone Taiwan Wild/Farmed *Haliotis discus hannai* Disk abalone Japan, China Wild/Farmed

Cultivation of abalone is widespread in many countries, including USA, Mexico, South Africa, Australia, New Zealand, Japan, Taiwan, China, Ireland, Chile and Iceland [17-20] China is the largest producer in the world with over 300 farms and a total production of approximately 4500 metric tonnes [9]. China, Taiwan and South Africa are considered as the key production powerhouses in the abalone industry (Table 2). China is the highest contributor of live product annually, and is still the major market for abalone produced world-wide [8]. This occurrence is closely related to the economic growth and the increase in personal wealth exhibited by the

delicacy continue to escalate.

208 Sustainable Aquaculture Techniques

rence of abalone farming facilities around the world.

**Table 2.** Global production of abalone indicating world leaders in abalone production, quantity of produce legally harvested and sold, and quantity of product illegally harvested; 2004-2005 data [20].

The South African abalone industry continues to establish itself as a premium brand in Asia, and is a good example of mariculture in a developing country. Abalone farming in SA is a relatively new but dynamic industry and has demonstrated a high production capacity [15]. One of the main challenges faced by the SA industry is the loss in revenue experienced due to poaching. Reports suggest that approximately 2000 tonnes are lost to the economy [4]. The abalone mariculture industry started developing in South Africa during the 1990's and has been gaining popularity. As a result, an economic environment whereby abalone aquaculture has become increasingly attractive as a financial investment has been established [17]. Abalone rearing facilities employs an intensive system in which abalone is reared at high densities in shore-based aquaculture systems [21].

The South African abalone, *Haliotis midae*, locally known as "perlemoen" is the only one of six indigenous species that is of commercial importance [8,22]. The abalone *H. midae*, takes over 30 years to reach a maximum size of 200mm (shell length) in natural habitats [21]. Even under farmed conditions, abalone growth is slow and often varies with size and age [23]. *H. midae* takes approximately 4 to 5 years to reach a marketable size of 100 mm (shell length) before it can be sold between US\$ 34 to 36 per kg on international markets [23,24]. Mariculture of abalone is thus important to ensure market supply and it is for these reasons that alternate approaches involved in the promotion of abalone growth and an increased immunity to disease of farmed abalone are required.

aquaculture initiatives have shown that the success of the technology is largely dependent on government sectors for support to enable the creation of a robust and sustainable industry [15]. The mariculture of abalone and on-going growth of this industry is extremely important, as it addresses a number of challenges faced by the South African nation, which are also common to many developing countries. This practice will contribute to a number of strategic impera‐ tives including economic and enterprise development, job creation, food security as well as

> **Tonnes produced**

**Table 3.** The status of abalone aquaculture and total investment in the South African abalone industry between 2004

Many aquaculture farmers, including those in the abalone mariculture sub-sector are faced with a myriad of challenges [28]. The challenges are further exacerbated as abalone mariculture activities become more intensified to optimise efficiencies in land usage and productivity. Adversities faced include slow growth rate of abalone, the outbreak of diseases, waste accumulation and deterioration of environmental conditions within the culture system [29,30]. Disease occurrence is usually associated with primary invasion by pathogenic strains as well as mechanical injury coupled to stressful environmental conditions such as physiochemical changes and poor water quality [31]. These factors, in an interactive way, challenge the health and immune response of the abalone and can lead to poor growth, ill health and increased mortality. This predicament has become one of the main barriers towards the successful development in the aquaculture industry, given that it limits the production of aquaculture

Disease control is an inherent part of any animal production system, however, in the aquatic environment, the intimate relationship between bacteria and their host, and the use of open production systems adds to this challenge [5]. Unpredictable mass mortalities still occur in the early life stages as a result of the proliferation of pathogens and opportunistic microorganisms, which are responsible for major economic losses [1]. Abalone like other aquatic species is susceptible to common marine pathogenic organisms such as *Vibrio parahaemolyticus, Vibrio anguillarum* and *Vibrio carchariae*, as well as prokaryotes and viruses [23,32,33]. When patho‐ genic bacteria or viruses are detected, farmers usually apply antimicrobial compounds to the feed and the rearing water [34]. Broad-spectrum anti-microbials have been extensively used

**2. Challenges faced in abalone mariculture and conventionally used**

2004 13 - 576 - 556 2005 13 197 745 27 776 2006 13 182 890 21 840

**Annual increase in**

Application of Biological Agents in Abalone Aquaculture: A South African Perspective

**industry (%) No. of employees**

http://dx.doi.org/10.5772/57197

211

the adoption of sustainable mariculture practices [15].

**million)**

products in terms of quality, quantity, and regularity [23].

**Year No. of producing farms Investment (R-**

and 2006 [26].

**mitigation strategies**

**Figure 1.** Holding tanks containing farm-produced abalone on the West coast of South Africa.

Land based aquaculture of abalone has increased over the last decade in South Africa (Figure 1), and commercially produced abalone has almost completely replaced the wild harvested product [4]. In 2010 the output of all facets of abalone harvest totalled 1015.44 metric tons.

The former status of abalone aquaculture in South Africa is outlined in Table 3. These farms produced 890 tonnes of abalone, and created direct employment to about 840 people. There was an increase in skilled individuals of approximately 7.6% over the 2 year period. Due to the high demand for this seafood delicacy, a gross turnover of approximately R200 million per annum was achieved [26]. The industry has demonstrated continued growth. In 2003/4; 19 enterprises secured permits to culture this species and by 2007, this number had increased to 24, further highlighting the growth potential of this particular sector [27]. It was estimated that by 2020 the production of abalone would amount 2895 tons with a value of R551 million, making abalone mariculture the leading subsector contributor in the aquaculture industry [4]. This growth has had a direct impact on the socio-economic growth of the country, whereby more than 1200 people with necessary skills are currently employed in the industry. Global aquaculture initiatives have shown that the success of the technology is largely dependent on government sectors for support to enable the creation of a robust and sustainable industry [15]. The mariculture of abalone and on-going growth of this industry is extremely important, as it addresses a number of challenges faced by the South African nation, which are also common to many developing countries. This practice will contribute to a number of strategic impera‐ tives including economic and enterprise development, job creation, food security as well as the adoption of sustainable mariculture practices [15].

approaches involved in the promotion of abalone growth and an increased immunity to

**Figure 1.** Holding tanks containing farm-produced abalone on the West coast of South Africa.

Land based aquaculture of abalone has increased over the last decade in South Africa (Figure 1), and commercially produced abalone has almost completely replaced the wild harvested product [4]. In 2010 the output of all facets of abalone harvest totalled 1015.44 metric tons. The former status of abalone aquaculture in South Africa is outlined in Table 3. These farms produced 890 tonnes of abalone, and created direct employment to about 840 people. There was an increase in skilled individuals of approximately 7.6% over the 2 year period. Due to the high demand for this seafood delicacy, a gross turnover of approximately R200 million per annum was achieved [26]. The industry has demonstrated continued growth. In 2003/4; 19 enterprises secured permits to culture this species and by 2007, this number had increased to 24, further highlighting the growth potential of this particular sector [27]. It was estimated that by 2020 the production of abalone would amount 2895 tons with a value of R551 million, making abalone mariculture the leading subsector contributor in the aquaculture industry [4]. This growth has had a direct impact on the socio-economic growth of the country, whereby more than 1200 people with necessary skills are currently employed in the industry. Global

disease of farmed abalone are required.

210 Sustainable Aquaculture Techniques


**Table 3.** The status of abalone aquaculture and total investment in the South African abalone industry between 2004 and 2006 [26].

### **2. Challenges faced in abalone mariculture and conventionally used mitigation strategies**

Many aquaculture farmers, including those in the abalone mariculture sub-sector are faced with a myriad of challenges [28]. The challenges are further exacerbated as abalone mariculture activities become more intensified to optimise efficiencies in land usage and productivity. Adversities faced include slow growth rate of abalone, the outbreak of diseases, waste accumulation and deterioration of environmental conditions within the culture system [29,30]. Disease occurrence is usually associated with primary invasion by pathogenic strains as well as mechanical injury coupled to stressful environmental conditions such as physiochemical changes and poor water quality [31]. These factors, in an interactive way, challenge the health and immune response of the abalone and can lead to poor growth, ill health and increased mortality. This predicament has become one of the main barriers towards the successful development in the aquaculture industry, given that it limits the production of aquaculture products in terms of quality, quantity, and regularity [23].

Disease control is an inherent part of any animal production system, however, in the aquatic environment, the intimate relationship between bacteria and their host, and the use of open production systems adds to this challenge [5]. Unpredictable mass mortalities still occur in the early life stages as a result of the proliferation of pathogens and opportunistic microorganisms, which are responsible for major economic losses [1]. Abalone like other aquatic species is susceptible to common marine pathogenic organisms such as *Vibrio parahaemolyticus, Vibrio anguillarum* and *Vibrio carchariae*, as well as prokaryotes and viruses [23,32,33]. When patho‐ genic bacteria or viruses are detected, farmers usually apply antimicrobial compounds to the feed and the rearing water [34]. Broad-spectrum anti-microbials have been extensively used as a means of disease control on many aquaculture facilities and unfortunately remains the method of choice for many farmers [23]. Some farmers also use antibiotics as prophylactics in large quantities, even when pathogens are not evident. This ill-advised practice has led to an increase in *Vibrios*, and other opportunistic pathogens, which possess multiple antibiotic resistance and as a result leads to the emergence of more virulent pathogens [28,35]. Plasmidcarrying resistance determinants have been transferred *in-vitro* from aquatic pathogens to human pathogens, such as from *V. cholerae* and *V. parahaemolyticus* to *Escherichia coli* by the horizontal spread of plasmids [36]. Furthermore, the presence of antibiotic residues in the tissues of animals, an imbalance of microorganisms in the gastrointestinal tract of aquatic species and the release of antibiotics into natural waters, and thereby poses further challenges. Consequently, the indiscriminate use of antibiotics confers a negative effect on the health of aquatic host species, the environment and consumers of food products [37]. Due to these concerns, more stringent regulation of antibiotic use in aquaculture has been imposed by the European Union [38]. Since the application of antibiotics is problematic, a strong demand for alternative methods of disease control is required in abalone mariculture.

the mariculture water and succumbs to such challenging conditions. Additionally, the digestive systems of these aquatic hosts are in constant contact with the rearing water, making

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In conventional mariculture operations, due to the high stocking densities, the generation of elevated stressful conditions in the culture environment is a frequent occurrence [41]. During the sorting process, abalones are presented with further stresses due to excessive handling and may sustain mechanical damage. Both disease and the deterioration of the environmental conditions are the most significant contributors to mass mortalities in mariculture operations [42]. Most operations employ land-based cultivation systems and use pump ashore technology which is energy intensive and costly [15]. The dilution of culture water, to reduce waste concentrations, by increasing flow rates is therefore not a feasible option. Regulatory author‐ ities are also becoming more stringent on the poor quality of farm effluent that is returned to the sea, as a result, preservation of the surrounding environment also becomes a serious challenge to abalone farmers. Bearing in mind that these factors are interactive and ultimately; either as singular occurrences or in combination, may result in decreased production and potential negative impact on the entire aquatic system. Improving digestion, reducing the concentration of waste and disease causing agents in the surrounding water and a heightened immune response are logical mitigation considerations to address the challenges of abalone mariculture. However, classical interventions are costly and mass mortalities continue to occur, resulting in severe setbacks on both economic and social fronts. In more serious instances, some farms have had no other option but to cease operations. The abalone maricul‐ ture industry is therefore in dire need of suitable interventions that can address these chal‐

**3. Biological agents as an option to address the challenges in abalone**

beneficial organisms to combat disease in an aquaculture environment [5, 45-51].

During the past two decades, the use of biological agents, particularly in feed and as water additives, as an alternative to the use of antibiotics and chemicals has shown to be promising in aquaculture, particularly in fish and shellfish larviculture [43]. The concept of biological agents has been traditionally associated with the use of beneficial microorganisms to restore the microbial balance in the gastro-intestinal tract of the host and to treat or prevent diseases and/or disorders [44]. Biological agents are emerging as a significant microbial supplements in the field of prophylaxis [36]. Many studies to date have revealed the potential of these

In aquatic ecosystems there is an intimate relationship between microorganisms and other biota in the environment [47]. Apart from the aquatic animal being surrounded by water, there is also a constant flow of water through the digestive tract of the aquatic animal. This conse‐ quently affects the synergistic balance of indigenous microflora associated with the cultured animal. The classical definition of a probiotic being that of microbes added to food, has become modified with respect to aquaculture, whereby a biological agent is used as a wider term and

the host more prone to infection.

lenges in an affordable and sustainable manner.

**aquaculture**

Abalones are generally regarded as opportunistic herbivores that readily accept a wide range of diets. In natural ecosystems, abalone feed primarily on seaweed or kelp. This food contains a high degree of alginolytic material that is not readily digestible; as a result, enteric microflora is relied upon to effectively digest this material. If the host intestinal flora lacks the ability to produce beneficial enzymes, a very slow digestion process would result, and consequently hinder the growth of the abalone itself. The proper nutrition and resultant growth of cultured abalone are critical factors that require insight in order to successfully culture this mollusc. Appropriate mechanisms for feeding of abalone are therefore very important and it has been shown that different diets results in different growth rates [39]. Growth rates, especially at the early life stages of abalone are affected considerably by the diet and the ability of the individ‐ uals to utilize available food with a high resultant feed conversion ratio [40]. In abalone production systems abalones are fed either formulated diets or seaweed/kelp, and in some instances, a combination of both [25]. An optimum formulated diet should enable more efficient digestion consequently resulting in higher feed conversion ratios, and ultimately boost the growth of the abalone, but the reality is that diets are based on raw material availa‐ bility and minimum cost formulation models. This presents a challenge in digestibility, feed conversion efficiency, animal health and waste generation into the culture environment. The development of artificial feeds and specialized feeding regimes to improve the growth of abalone has assisted in developing this practice into a more cost-effective and manageable industry [21]. It has been reported that abalone fed an artificial diet, have better canning characteristics than that of wild abalone, and canning yields have shown an increase of up to 15% [15].

Incorrectly formulated diets, may also lead to the accumulation of waste in the culture system which could cause the deterioration of water quality in the culture environment. The propen‐ sity of algal blooms and the proliferation of disease-causing parasites and pathogens increases in the event of waste accumulation due to poor husbandry and poor feed digestibility. The abalone itself then becomes highly susceptible to disease due to these negative conditions in the mariculture water and succumbs to such challenging conditions. Additionally, the digestive systems of these aquatic hosts are in constant contact with the rearing water, making the host more prone to infection.

as a means of disease control on many aquaculture facilities and unfortunately remains the method of choice for many farmers [23]. Some farmers also use antibiotics as prophylactics in large quantities, even when pathogens are not evident. This ill-advised practice has led to an increase in *Vibrios*, and other opportunistic pathogens, which possess multiple antibiotic resistance and as a result leads to the emergence of more virulent pathogens [28,35]. Plasmidcarrying resistance determinants have been transferred *in-vitro* from aquatic pathogens to human pathogens, such as from *V. cholerae* and *V. parahaemolyticus* to *Escherichia coli* by the horizontal spread of plasmids [36]. Furthermore, the presence of antibiotic residues in the tissues of animals, an imbalance of microorganisms in the gastrointestinal tract of aquatic species and the release of antibiotics into natural waters, and thereby poses further challenges. Consequently, the indiscriminate use of antibiotics confers a negative effect on the health of aquatic host species, the environment and consumers of food products [37]. Due to these concerns, more stringent regulation of antibiotic use in aquaculture has been imposed by the European Union [38]. Since the application of antibiotics is problematic, a strong demand for

Abalones are generally regarded as opportunistic herbivores that readily accept a wide range of diets. In natural ecosystems, abalone feed primarily on seaweed or kelp. This food contains a high degree of alginolytic material that is not readily digestible; as a result, enteric microflora is relied upon to effectively digest this material. If the host intestinal flora lacks the ability to produce beneficial enzymes, a very slow digestion process would result, and consequently hinder the growth of the abalone itself. The proper nutrition and resultant growth of cultured abalone are critical factors that require insight in order to successfully culture this mollusc. Appropriate mechanisms for feeding of abalone are therefore very important and it has been shown that different diets results in different growth rates [39]. Growth rates, especially at the early life stages of abalone are affected considerably by the diet and the ability of the individ‐ uals to utilize available food with a high resultant feed conversion ratio [40]. In abalone production systems abalones are fed either formulated diets or seaweed/kelp, and in some instances, a combination of both [25]. An optimum formulated diet should enable more efficient digestion consequently resulting in higher feed conversion ratios, and ultimately boost the growth of the abalone, but the reality is that diets are based on raw material availa‐ bility and minimum cost formulation models. This presents a challenge in digestibility, feed conversion efficiency, animal health and waste generation into the culture environment. The development of artificial feeds and specialized feeding regimes to improve the growth of abalone has assisted in developing this practice into a more cost-effective and manageable industry [21]. It has been reported that abalone fed an artificial diet, have better canning characteristics than that of wild abalone, and canning yields have shown an increase of up to

Incorrectly formulated diets, may also lead to the accumulation of waste in the culture system which could cause the deterioration of water quality in the culture environment. The propen‐ sity of algal blooms and the proliferation of disease-causing parasites and pathogens increases in the event of waste accumulation due to poor husbandry and poor feed digestibility. The abalone itself then becomes highly susceptible to disease due to these negative conditions in

alternative methods of disease control is required in abalone mariculture.

15% [15].

212 Sustainable Aquaculture Techniques

In conventional mariculture operations, due to the high stocking densities, the generation of elevated stressful conditions in the culture environment is a frequent occurrence [41]. During the sorting process, abalones are presented with further stresses due to excessive handling and may sustain mechanical damage. Both disease and the deterioration of the environmental conditions are the most significant contributors to mass mortalities in mariculture operations [42]. Most operations employ land-based cultivation systems and use pump ashore technology which is energy intensive and costly [15]. The dilution of culture water, to reduce waste concentrations, by increasing flow rates is therefore not a feasible option. Regulatory author‐ ities are also becoming more stringent on the poor quality of farm effluent that is returned to the sea, as a result, preservation of the surrounding environment also becomes a serious challenge to abalone farmers. Bearing in mind that these factors are interactive and ultimately; either as singular occurrences or in combination, may result in decreased production and potential negative impact on the entire aquatic system. Improving digestion, reducing the concentration of waste and disease causing agents in the surrounding water and a heightened immune response are logical mitigation considerations to address the challenges of abalone mariculture. However, classical interventions are costly and mass mortalities continue to occur, resulting in severe setbacks on both economic and social fronts. In more serious instances, some farms have had no other option but to cease operations. The abalone maricul‐ ture industry is therefore in dire need of suitable interventions that can address these chal‐ lenges in an affordable and sustainable manner.

### **3. Biological agents as an option to address the challenges in abalone aquaculture**

During the past two decades, the use of biological agents, particularly in feed and as water additives, as an alternative to the use of antibiotics and chemicals has shown to be promising in aquaculture, particularly in fish and shellfish larviculture [43]. The concept of biological agents has been traditionally associated with the use of beneficial microorganisms to restore the microbial balance in the gastro-intestinal tract of the host and to treat or prevent diseases and/or disorders [44]. Biological agents are emerging as a significant microbial supplements in the field of prophylaxis [36]. Many studies to date have revealed the potential of these beneficial organisms to combat disease in an aquaculture environment [5, 45-51].

In aquatic ecosystems there is an intimate relationship between microorganisms and other biota in the environment [47]. Apart from the aquatic animal being surrounded by water, there is also a constant flow of water through the digestive tract of the aquatic animal. This conse‐ quently affects the synergistic balance of indigenous microflora associated with the cultured animal. The classical definition of a probiotic being that of microbes added to food, has become modified with respect to aquaculture, whereby a biological agent is used as a wider term and is defined as "a live microbial adjunct which has a beneficial effect on the host by modifying the host-association or ambient microbial community, by ensuring improved use of the feed or enhancing its nutritional value, by enhancing the host response towards disease, or by improving the quality of its ambient environment" [47]. Some studies have shown that as a result of intensification of aquaculture farms a negative impact has been conferred on the composition of the different protective microbial flora interacting with the host [5]. This occurrence results in an increase in susceptibility of the host to diseases. It has become evident that augmentation of aquaculture systems with biological agents can lead to growth of beneficial bacteria thus improving overall health of the culture system and the host [5].

acids, amino acids and vitamins [63,64]. Some isolates also have the ability to break down potentially indigestible components of the feed thus reducing toxicity and improving feed conversion efficiency [23,63]. Abalones are in most instances, fed a diet consisting mainly of kelp, which is a complex macroalgal polysaccharide deficient in many essential nutrients [64]. It is therefore imperative that enteric bacteria in the abalone gut are present in sufficient amounts which will adequately facilitate digestion by supplying highly effective polysacchar‐ olytic enzymes [23]. Many bacteria displaying these properties have been found to exist throughout the digestive tract of *H. midae* [23,40]. Some findings indicated that enteric bacteria isolated from the gastrointestinal tract of abalone were capable of degrading agar, carrageenan, laminarin, and alginate. It was also shown that 70 - 90% of the enzyme activity was extracellular suggesting that bacterial enzymes were secreted into the lumen of the gut where they were

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Related studies have indicated that *Debaryomyces hansenii* HF1; isolated from larvae of European bass (*Dicentrarchus labrax*) demonstrated high levels of amylase and trypsin; which aided in the digestion of feed [65]. Similar studies on a combination of 3 potential probiotic strains (*Agarivorans albus* F1-UMA, *Vibrio sp*. C21-UMA and *Vibrio sp*. F15-UMA) showed significant increases in growth of abalone over a 210 day period [58]. An average monthly improvement in growth of 9.58% of length and 15.94% in weight was observed in relevant test systems. Probiotic organisms persisted in the gut up to a concentration of 106 CFU.g-1 and also remained present for 16 to 19 days in juvenile and adult abalone after cessation of feeding with a probiotic supplemented diet. Authors, [40] and [66] also reported that when probiotics were applied to a host, a higher growth rate was observed, as isolated gut bacteria produced

enzymes that were able to aid in digestion thus improving the health of abalone.

An inaugural application of probiotics in abalone aquaculture was demonstrated by [23]. They reported that microbes isolated from the gastrointestinal tract of *H. midae* demonstrated an ability to improve digestion, growth and immunity of abalone. From their study it was discovered that *D. hansenii*, *Cryptococcus sp., V. midae, and Pseudoalteromonas sp.* reside in the intestinal tract of *H. midae* and have the ability to improve the nutritional status of the abalone feed. Further research demonstrated that these probionts were able to breakdown complex proteins and starches, hence making the subsequent assimilation by abalone easier. Studies conducted by [23] indicated that abalones that had been supplemented with probiotics had a survival rate of 62% compared to 25% of untreated abalones; in challenge trials against bacterium *V. anguillarum*. They later formulated a mixture of probiotics using two yeasts and one bacterial strain (SS1, AY1 and SY9) respectively for abalone. The probiont cocktail was

(20 mm) improved by 8% and large abalone (60 mm) increased by 34%. In addition, increases in intestinal proteolytic and amylolytic activity were observed, in probiotic fed abalone when

Lactic acid bacteria (LAB) from different sources and evaluated potential probiotic effects in abalones *in-vitro*, *Lactobacillus sp*. strain a3 and *Enterococcus sp*. strain s6, was isolated by [56], and were shown to inhibit the growth of three abalone pathogens *viz.*, *Listonella anguillarum*, *V. carchariae* and *V. harveyi*. Furthermore these organisms were able to colonize the gut of

cells.g-1. The growth rate of small abalone

able to hydrolyse complex algal polysaccharides [40].

added to dry feed to a final concentration of 1×107

compared to abalone fed the standard feed devoid of probiotics [30].

The use of biological agents in disease control and improvement of aquaculture is important as demand for environmentally friendly aquaculture practices is on the rise. Biological agents that may be applied in aquaculture comprise of isolates belonging to a wide range of yeast, bacteria and even phytoplankton species [52]. In abalone aquaculture, potential probionts listed to date include, *Vibrio* spp., [23,53-55] *Debaryomyces sp*., *Cryptococcus sp*., and *Pseudoal‐ teromonas sp*., [23,24,30], *Lactobacillus* and *Enterococcus sp*., [56]; *Pediococcus* sp. Strain Ab1 [57], *Agarivorans albus* F1-UMA [58] and *Shewanella sp* [51].

Biological agents have been found to confer beneficial effects on the host by various modes of action. These may occur as a singular or combined effect, and thus far the following have been reported; (1) the production of antimicrobial products; (2) competitive exclusion; (3) coloni‐ sation of the gut and improving microbial balance; (4) enhancement of the host immune response; (5) detoxification of harmful compounds; (6) improved growth rate of the host;(7) antiviral effects, (8) provision of nutrients and enzymatic functions; and (9) improved water quality. Further reports by [24] stated that the addition of probiotics to the diet of farmed abalone, could possibly lead to a boost in abalone growth by a number of potential strategies. Some of which include (1) increasing the nutrients accessible to the abalone for absorption in the gut, (2) increasing the pool of secreted digestive enzymes in the gut of abalone, and (3) use of bacterial supplements as an additional nutrient source.

In many instances, pathogen inhibition and/or disease control has been observed as a conse‐ quence of the release of chemical substances with bactericidal effects by probiotic bacteria [47]. The production of antibiotics, bacteriocins, enzymes, hydrogen peroxide, siderophores and the altering of the pH levels due to the generation of organic acids are all traits displayed by biological agents [47,59-61]. In addition, these biological agents compete with pathogens based on intrinsic growth rate and spacial attachment. Microbial colonisation is characterised by the attachment of the biological agent to the mucosal surface and epithelial cells of the host. This prevents the proliferation of opportunistic pathogens thereby preventing infection [62]. It is common knowledge that for a pathogen to be active and replicate in a host system, it requires attachment to these surfaces [62]. When probiotics are administered over a long period, they successfully colonize the gastrointestinal tract, even after cessation of feed supplemented with probiotics. This occurs since the multiplication rate of these probiotics is higher than the rate at which they are removed, thus a build-up in the intestinal mucosa of the host is observed [62].

Host nutrition is improved, as the applied probionts secrete high levels of hydrolytic enzymes such as amylases, proteases and lipases; as well as the provision of growth factors such as fatty acids, amino acids and vitamins [63,64]. Some isolates also have the ability to break down potentially indigestible components of the feed thus reducing toxicity and improving feed conversion efficiency [23,63]. Abalones are in most instances, fed a diet consisting mainly of kelp, which is a complex macroalgal polysaccharide deficient in many essential nutrients [64]. It is therefore imperative that enteric bacteria in the abalone gut are present in sufficient amounts which will adequately facilitate digestion by supplying highly effective polysacchar‐ olytic enzymes [23]. Many bacteria displaying these properties have been found to exist throughout the digestive tract of *H. midae* [23,40]. Some findings indicated that enteric bacteria isolated from the gastrointestinal tract of abalone were capable of degrading agar, carrageenan, laminarin, and alginate. It was also shown that 70 - 90% of the enzyme activity was extracellular suggesting that bacterial enzymes were secreted into the lumen of the gut where they were able to hydrolyse complex algal polysaccharides [40].

is defined as "a live microbial adjunct which has a beneficial effect on the host by modifying the host-association or ambient microbial community, by ensuring improved use of the feed or enhancing its nutritional value, by enhancing the host response towards disease, or by improving the quality of its ambient environment" [47]. Some studies have shown that as a result of intensification of aquaculture farms a negative impact has been conferred on the composition of the different protective microbial flora interacting with the host [5]. This occurrence results in an increase in susceptibility of the host to diseases. It has become evident that augmentation of aquaculture systems with biological agents can lead to growth of beneficial bacteria thus improving overall health of the culture system and the host [5].

The use of biological agents in disease control and improvement of aquaculture is important as demand for environmentally friendly aquaculture practices is on the rise. Biological agents that may be applied in aquaculture comprise of isolates belonging to a wide range of yeast, bacteria and even phytoplankton species [52]. In abalone aquaculture, potential probionts listed to date include, *Vibrio* spp., [23,53-55] *Debaryomyces sp*., *Cryptococcus sp*., and *Pseudoal‐ teromonas sp*., [23,24,30], *Lactobacillus* and *Enterococcus sp*., [56]; *Pediococcus* sp. Strain Ab1 [57],

Biological agents have been found to confer beneficial effects on the host by various modes of action. These may occur as a singular or combined effect, and thus far the following have been reported; (1) the production of antimicrobial products; (2) competitive exclusion; (3) coloni‐ sation of the gut and improving microbial balance; (4) enhancement of the host immune response; (5) detoxification of harmful compounds; (6) improved growth rate of the host;(7) antiviral effects, (8) provision of nutrients and enzymatic functions; and (9) improved water quality. Further reports by [24] stated that the addition of probiotics to the diet of farmed abalone, could possibly lead to a boost in abalone growth by a number of potential strategies. Some of which include (1) increasing the nutrients accessible to the abalone for absorption in the gut, (2) increasing the pool of secreted digestive enzymes in the gut of abalone, and (3) use

In many instances, pathogen inhibition and/or disease control has been observed as a conse‐ quence of the release of chemical substances with bactericidal effects by probiotic bacteria [47]. The production of antibiotics, bacteriocins, enzymes, hydrogen peroxide, siderophores and the altering of the pH levels due to the generation of organic acids are all traits displayed by biological agents [47,59-61]. In addition, these biological agents compete with pathogens based on intrinsic growth rate and spacial attachment. Microbial colonisation is characterised by the attachment of the biological agent to the mucosal surface and epithelial cells of the host. This prevents the proliferation of opportunistic pathogens thereby preventing infection [62]. It is common knowledge that for a pathogen to be active and replicate in a host system, it requires attachment to these surfaces [62]. When probiotics are administered over a long period, they successfully colonize the gastrointestinal tract, even after cessation of feed supplemented with probiotics. This occurs since the multiplication rate of these probiotics is higher than the rate at which they are removed, thus a build-up in the intestinal mucosa of the host is observed [62]. Host nutrition is improved, as the applied probionts secrete high levels of hydrolytic enzymes such as amylases, proteases and lipases; as well as the provision of growth factors such as fatty

*Agarivorans albus* F1-UMA [58] and *Shewanella sp* [51].

214 Sustainable Aquaculture Techniques

of bacterial supplements as an additional nutrient source.

Related studies have indicated that *Debaryomyces hansenii* HF1; isolated from larvae of European bass (*Dicentrarchus labrax*) demonstrated high levels of amylase and trypsin; which aided in the digestion of feed [65]. Similar studies on a combination of 3 potential probiotic strains (*Agarivorans albus* F1-UMA, *Vibrio sp*. C21-UMA and *Vibrio sp*. F15-UMA) showed significant increases in growth of abalone over a 210 day period [58]. An average monthly improvement in growth of 9.58% of length and 15.94% in weight was observed in relevant test systems. Probiotic organisms persisted in the gut up to a concentration of 106 CFU.g-1 and also remained present for 16 to 19 days in juvenile and adult abalone after cessation of feeding with a probiotic supplemented diet. Authors, [40] and [66] also reported that when probiotics were applied to a host, a higher growth rate was observed, as isolated gut bacteria produced enzymes that were able to aid in digestion thus improving the health of abalone.

An inaugural application of probiotics in abalone aquaculture was demonstrated by [23]. They reported that microbes isolated from the gastrointestinal tract of *H. midae* demonstrated an ability to improve digestion, growth and immunity of abalone. From their study it was discovered that *D. hansenii*, *Cryptococcus sp., V. midae, and Pseudoalteromonas sp.* reside in the intestinal tract of *H. midae* and have the ability to improve the nutritional status of the abalone feed. Further research demonstrated that these probionts were able to breakdown complex proteins and starches, hence making the subsequent assimilation by abalone easier. Studies conducted by [23] indicated that abalones that had been supplemented with probiotics had a survival rate of 62% compared to 25% of untreated abalones; in challenge trials against bacterium *V. anguillarum*. They later formulated a mixture of probiotics using two yeasts and one bacterial strain (SS1, AY1 and SY9) respectively for abalone. The probiont cocktail was added to dry feed to a final concentration of 1×107 cells.g-1. The growth rate of small abalone (20 mm) improved by 8% and large abalone (60 mm) increased by 34%. In addition, increases in intestinal proteolytic and amylolytic activity were observed, in probiotic fed abalone when compared to abalone fed the standard feed devoid of probiotics [30].

Lactic acid bacteria (LAB) from different sources and evaluated potential probiotic effects in abalones *in-vitro*, *Lactobacillus sp*. strain a3 and *Enterococcus sp*. strain s6, was isolated by [56], and were shown to inhibit the growth of three abalone pathogens *viz.*, *Listonella anguillarum*, *V. carchariae* and *V. harveyi*. Furthermore these organisms were able to colonize the gut of *Haliotis gigantea* thus enhancing the production of volatile short chain fatty acids (VSCFA) such as acetic acid. They later showed that by supplementing commercially available abalone feed with a potential probiotic organism, *Pediococcus sp*. Ab 1, a change in host intestinal flora was observed. In addition, higher levels of alginate lyase activity and VSCFAs were recorded. All of these factors led to a combined impact by enhancing the growth of the abalone, *H. gigan‐ tea* [57].

economic competitiveness of the bioprocess technology [74]. Nutrient sources generally play a dominant role in the productivity of the production process since they supply nutrient and growth factors that are directly linked with the formation of biomass and metabolites [75]. It has been suggested that economical and commercially available medium options be investi‐ gated in order to reduce production costs [76,77]. The growth medium used can be either a defined or undefined medium. A defined medium has known quantities of all the ingredients that constitute the formulation. An undefined medium contains complex ingredients such corn steep liquor (CSL), which consist of a mixture of chemicals in unknown quantities that vary according to supplier and production batches. The undefined medium option is usually

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217

Yeast extract is a commonly used growth medium component, and has been used extensively in many production processes. It is an important nitrogen and nutrient source as it contains an array of amino acids, vitamins and other growth factors required for microbial growth [78-80]. Several studies have indicated that high cell yields and productivities have been obtained with the use of yeast extract in various production processes [81-83]. However, the disadvantage of using this nutrient source is that it results in high-priced production processes due to its associated cost [78]. The use of yeast extract in a production process is therefore regarded as a major technical hurdle that should be overcome in order to successfully minimize production costs [79]. Other nutrient sources that have been used include casamino acids and peptone, which are produced via the enzymatic digestion of meat. The use of these products results in expensive production processes; even though these have been shown to be highly effective nutrient sources. Furthermore, these nutrients sources have negative market accept‐ ance as they are animal by-products [80]. Regulations have also exerted significant pressure on the use of these animal by-products, which have limited their availability. It is therefore imperative that cheaper, safer and readily accessible nutrient sources, capable of supporting production of biological agents, be used in order to ensure that a production process is

CSL has been identified as a lower cost, more effective growth medium that can be used in production, in comparison to conventional nutrient substrates such as yeast extract, peptone and casamino acids [50]. It is produced by immersing corn into dilute sulphur oxide during the starch-manufacturing processes and is a major by-product of the corn-starch processing industry [84]. It has also been shown to be a supplementary source of vitamins and nitrogen to the culture medium [85,86]. The use of CSL has had numerous successes in diverse industrial fermentation processes [76] with high cell yields and productivities being major benefits [87]. Other than the assessment of a suitable nitrogen source, alternative carbohydrate sources also need to be reviewed as they play a dominant role in the productivity of a production process. These nutrient sources are directly linked with energy provision for the formation of biomass and metabolites [75]. Different microbes utilise carbohydrate sources in varying ways. Glucose is a relatively expensive carbohydrate source, and its use in large scale process is limited as a result of high subsequent production costs [88]. When developing efficient bioprocesses, attempts are made to obtain economical and commercially available carbohydrate sources such that the production costs are minimised [74,76,77,89,90]. High test molasses (HTM) is a

applied in industrial processes based on its low cost [74].

economically attractive.

Studies conducted by [51] revealed that within a week of supplementing the feed of *Haliotis discus hannai Ino* with two probiotic organisms, *Shewanella colwelliana* WA64 and *Shewanella olleyana* WA65, increases in cellular and humoral immune response, higher haemocytes, respiratory burst activity, serum lysozyme activity and total levels of protein were observed. It was therefore concluded that both strains may be used as a dietary probiotic supplement to improve innate immunity and disease resistance in abalone.

Studies on feed probiotics for abalone aquaculture show much promise, however the use of water bioremediation bacteria has been neglected. With intensification of abalone culture activities, increased energy costs of pumping sea water and stricter regulation on environ‐ mental pollution, the need for such biological agents will become obvious in the near future. A study based on carp was done by [67] where a consortium of three *Bacillus* isolates demon‐ strated the ability to reduce diseases and improve water quality. Additionally, studies revealed that when a three organism consortium was added to a culture environment, a decrease in the prevalence of pathogenic bacteria was observed. Moreover it was found that nitrate, nitrite and ammonium concentrations were significantly lower as compared to the control treatments and that the applied treatment did not alter the health, growth and oxygen sufficiency of the test systems negatively. The attractive nature of *Bacillus* spp. as biological agents should be considered for application in abalone mariculture.

#### **4. Rationale used for the production of probiotics and biological agents**

The use of biological agents in aquaculture has over the years gained momentum. It is thus, imperative that these micro-organisms be commercially produced in order to meet market needs. A comprehensive production process needs to be developed and optimised for each biological agent. This will facilitate the commercial roll-out of probiotic products of this nature, but will be largely dependent on (1) the efficiency of the production process and (2) the ability to produce large quantities of the probiotic in a suitable form with practical shelf stability [69]. Important criteria influencing the commercial use of biological products are cost, efficacy, shelf life and convenience to the end user [70,71]. The cultivation of microorganisms at a large scale is influenced by various factors such as the composition of the media, physical and chemical variables, substrate feed, oxygen availability and many others [72]; each of which have to be optimized to ensure a cost effective production process.

The growth medium that is used to support high productivities in commercial bioprocesses is predominantly formulated with inexpensive nutrient sources [73]. The choice of medium to be used in production is an essential aspect of process development as it influences the economic competitiveness of the bioprocess technology [74]. Nutrient sources generally play a dominant role in the productivity of the production process since they supply nutrient and growth factors that are directly linked with the formation of biomass and metabolites [75]. It has been suggested that economical and commercially available medium options be investi‐ gated in order to reduce production costs [76,77]. The growth medium used can be either a defined or undefined medium. A defined medium has known quantities of all the ingredients that constitute the formulation. An undefined medium contains complex ingredients such corn steep liquor (CSL), which consist of a mixture of chemicals in unknown quantities that vary according to supplier and production batches. The undefined medium option is usually applied in industrial processes based on its low cost [74].

*Haliotis gigantea* thus enhancing the production of volatile short chain fatty acids (VSCFA) such as acetic acid. They later showed that by supplementing commercially available abalone feed with a potential probiotic organism, *Pediococcus sp*. Ab 1, a change in host intestinal flora was observed. In addition, higher levels of alginate lyase activity and VSCFAs were recorded. All of these factors led to a combined impact by enhancing the growth of the abalone, *H. gigan‐*

Studies conducted by [51] revealed that within a week of supplementing the feed of *Haliotis discus hannai Ino* with two probiotic organisms, *Shewanella colwelliana* WA64 and *Shewanella olleyana* WA65, increases in cellular and humoral immune response, higher haemocytes, respiratory burst activity, serum lysozyme activity and total levels of protein were observed. It was therefore concluded that both strains may be used as a dietary probiotic supplement to

Studies on feed probiotics for abalone aquaculture show much promise, however the use of water bioremediation bacteria has been neglected. With intensification of abalone culture activities, increased energy costs of pumping sea water and stricter regulation on environ‐ mental pollution, the need for such biological agents will become obvious in the near future. A study based on carp was done by [67] where a consortium of three *Bacillus* isolates demon‐ strated the ability to reduce diseases and improve water quality. Additionally, studies revealed that when a three organism consortium was added to a culture environment, a decrease in the prevalence of pathogenic bacteria was observed. Moreover it was found that nitrate, nitrite and ammonium concentrations were significantly lower as compared to the control treatments and that the applied treatment did not alter the health, growth and oxygen sufficiency of the test systems negatively. The attractive nature of *Bacillus* spp. as biological agents should be

**4. Rationale used for the production of probiotics and biological agents**

The use of biological agents in aquaculture has over the years gained momentum. It is thus, imperative that these micro-organisms be commercially produced in order to meet market needs. A comprehensive production process needs to be developed and optimised for each biological agent. This will facilitate the commercial roll-out of probiotic products of this nature, but will be largely dependent on (1) the efficiency of the production process and (2) the ability to produce large quantities of the probiotic in a suitable form with practical shelf stability [69]. Important criteria influencing the commercial use of biological products are cost, efficacy, shelf life and convenience to the end user [70,71]. The cultivation of microorganisms at a large scale is influenced by various factors such as the composition of the media, physical and chemical variables, substrate feed, oxygen availability and many others [72]; each of which have to be

The growth medium that is used to support high productivities in commercial bioprocesses is predominantly formulated with inexpensive nutrient sources [73]. The choice of medium to be used in production is an essential aspect of process development as it influences the

improve innate immunity and disease resistance in abalone.

considered for application in abalone mariculture.

optimized to ensure a cost effective production process.

*tea* [57].

216 Sustainable Aquaculture Techniques

Yeast extract is a commonly used growth medium component, and has been used extensively in many production processes. It is an important nitrogen and nutrient source as it contains an array of amino acids, vitamins and other growth factors required for microbial growth [78-80]. Several studies have indicated that high cell yields and productivities have been obtained with the use of yeast extract in various production processes [81-83]. However, the disadvantage of using this nutrient source is that it results in high-priced production processes due to its associated cost [78]. The use of yeast extract in a production process is therefore regarded as a major technical hurdle that should be overcome in order to successfully minimize production costs [79]. Other nutrient sources that have been used include casamino acids and peptone, which are produced via the enzymatic digestion of meat. The use of these products results in expensive production processes; even though these have been shown to be highly effective nutrient sources. Furthermore, these nutrients sources have negative market accept‐ ance as they are animal by-products [80]. Regulations have also exerted significant pressure on the use of these animal by-products, which have limited their availability. It is therefore imperative that cheaper, safer and readily accessible nutrient sources, capable of supporting production of biological agents, be used in order to ensure that a production process is economically attractive.

CSL has been identified as a lower cost, more effective growth medium that can be used in production, in comparison to conventional nutrient substrates such as yeast extract, peptone and casamino acids [50]. It is produced by immersing corn into dilute sulphur oxide during the starch-manufacturing processes and is a major by-product of the corn-starch processing industry [84]. It has also been shown to be a supplementary source of vitamins and nitrogen to the culture medium [85,86]. The use of CSL has had numerous successes in diverse industrial fermentation processes [76] with high cell yields and productivities being major benefits [87]. Other than the assessment of a suitable nitrogen source, alternative carbohydrate sources also need to be reviewed as they play a dominant role in the productivity of a production process. These nutrient sources are directly linked with energy provision for the formation of biomass and metabolites [75]. Different microbes utilise carbohydrate sources in varying ways. Glucose is a relatively expensive carbohydrate source, and its use in large scale process is limited as a result of high subsequent production costs [88]. When developing efficient bioprocesses, attempts are made to obtain economical and commercially available carbohydrate sources such that the production costs are minimised [74,76,77,89,90]. High test molasses (HTM) is a valuable carbohydrate used commercially due to its local availability and cost competitiveness. It has been applied extensively as an alternative carbohydrate source in various production processes [74,76,77,80,90,91]. HTM, unlike conventional molasses, is a purer product form that enhances mass transfer and reduces impurities in a production process. HTM has been used as a carbohydrate source because it consists of glucose, fructose and sucrose. Inverted HTM is also readily accessible, which contains mainly glucose and fructose in equal proportions with a small amount of residual sucrose. Other than being a carbohydrate source, HTM also provides abundant vitamins and other growth factors required for microbial growth [80,92].

between the optimum and the maximum pH value [107]. It is well known that pH is important in controlling initiation of growth by microorganisms [108]. The effect of pH on growth include: (1) affecting the production and activity of enzyme systems controlling growth and division, (2) altering the solubility of essential nutrients, (3) modifying the permeability of cells to substances essential for growth, (4) changing the nature of cell surfaces of envelope materials and cell morphology, and (5) modifying the composition of the cultivation medium [108-111]. Oxygen sufficiency is an additional factor to be considered in the design of an optimum bioprocess strategy. In high-cell density cultivations, oxygen limitation can be very challeng‐ ing, and prevents attainment of high cell titres [112]. The method of oxygenation must be given a high degree of consideration, as excessive rates of agitation and sparging will encourage foam formation and initiate cell sheer. On the contrary, inadequate aeration causes oxygen limitation, and has been reported to be highly detrimental to process productivity, in terms of

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These factors have an impact on the improved yield and productivity of a process and as a result the overall cost of the production process. In addition they also confer information of the functionality of the probiotic once it enters the host environment [50,90]. Therefore, bioprocesses are designed such that the overall process has increased cell yields, productivities and a lowered cost, which ultimately results in a feasible and economically attractive produc‐ tion process. It is essential that these requirements are met to ensure that biological agents can

Once the relevant biological agents have been successfully cultivated at a large scale, the resultant fermentation broth needs to be recovered efficiently to be utilized in subsequent processing and formulation steps [113,114]. The downstream process has a major influence on product commercialization as major constraints in most processes are embedded in harvesting and formulation costs [115,116]. This includes key aspects such as maximising recovery and preservation of viability, which are essential, in terms of applying an effective biological agent, especially in aquatic systems [117]. In addition, it is also vital to ensure that the final product to be administered to the host aligns with end user requirements such as stability, consistency, easy application, efficacy and affordability [115,118,119]. As a consequence; robust costeffective choices of process steps and ingredients, dictated by the end product characteristics, are necessary to improve the commercial success of newly developed biological agents [115].

The main objective for downstream processing is to minimise the number of unit operations involved in the process, thus reducing overall process and validation costs, while also simplifying ease and economy of process automation [115]. An additional consideration is the final anticipated form of the end product which has implications on the choice of process options while meeting customer expectations (Figure 2) [120]. The downstream process unit operations, completes the process chain; from the upstream fermentation to the end product. It is therefore considered to be an extremely important prerequisite for commercialization of

growth rates and product formation as well as cell viability [96,112]

**5. Processing of probiotics into market acceptable products**

be affordably adopted for use in abalone aquaculture.

In some instances, microorganisms may require vitamins to be present in the cultivation medium which can be found in the supplemented complex nutrient sources, whereas others can be cultivated in a medium devoid of vitamins [93]. Vitamins are growth factors required by most microorganisms for the production of enzyme cofactors [74,94]. Other than vitamins, microorganisms also require trace elements for their growth. Trace elements form part of enzymes and co-factors and they aid in the catalysis of reactions and maintenance of protein structures [74,95]. Supplementation of exotic trace elements and vitamins can be costly and are therefore avoided if cheaper nutrient sources can satisfy the essential requirements for growth of biological agents in production processes.

Other than an influence on growth, the type of growth medium used in a production process also influences physical parameters such as mass transfer and the formation of foam. Growth media rich in nitrogen sources usually result in increased foam formation [96]. In addition the sparging of gas through the growth medium and agitation at high speeds results in excess foam formation, in oxygen intensive processes. This reduces the efficiency of gaseous exchange at the surface of the culture, as a barrier is formed between the culture and the gases present in the headspace of the vessel [97,98]. Additionally, cells and the culture medium can be lost in the foam phase in the event of vessel overflow. The sensitivity of microorganisms to antifoam toxicity is an important factor that must be considered during the development of production processes; as it can result in a significant decrease of the process performance [98].

Once a suitable fermentation medium has been developed, optimization of physiological growth conditions such as temperature, pH and oxygen sufficiency are imperative, in order to successfully produce biological agents on a large scale. Temperature and pH have been reported to be amongst the most important environmental parameters which control the activities and growth rates of many microorganisms as it governs all the physiological processes. The impact of temperature has been observed at the cellular level, and can either increase or decrease the catalytic activity of pertinent metabolic and digestive enzymes [99-102]. It has been reported that the alteration of growth conditions to an unsuitable range can significantly increase the lag phase of a wide range of micro-organisms, which is highly undesirable when designing an efficient bioprocess strategy [104]. Since temperature affects microbial growth rate, it also affects the growth yield of a culture because the relative energy requirements for cell maintenance increases; when growth rates are reduced [105]. pH homeostasis is another important factor that needs to be considered during the growth of microorganisms [106]. For most microorganisms, there is an increase in growth rate between the minimum and the optimum pH levels and a corresponding decrease in growth rate between the optimum and the maximum pH value [107]. It is well known that pH is important in controlling initiation of growth by microorganisms [108]. The effect of pH on growth include: (1) affecting the production and activity of enzyme systems controlling growth and division, (2) altering the solubility of essential nutrients, (3) modifying the permeability of cells to substances essential for growth, (4) changing the nature of cell surfaces of envelope materials and cell morphology, and (5) modifying the composition of the cultivation medium [108-111]. Oxygen sufficiency is an additional factor to be considered in the design of an optimum bioprocess strategy. In high-cell density cultivations, oxygen limitation can be very challeng‐ ing, and prevents attainment of high cell titres [112]. The method of oxygenation must be given a high degree of consideration, as excessive rates of agitation and sparging will encourage foam formation and initiate cell sheer. On the contrary, inadequate aeration causes oxygen limitation, and has been reported to be highly detrimental to process productivity, in terms of growth rates and product formation as well as cell viability [96,112]

valuable carbohydrate used commercially due to its local availability and cost competitiveness. It has been applied extensively as an alternative carbohydrate source in various production processes [74,76,77,80,90,91]. HTM, unlike conventional molasses, is a purer product form that enhances mass transfer and reduces impurities in a production process. HTM has been used as a carbohydrate source because it consists of glucose, fructose and sucrose. Inverted HTM is also readily accessible, which contains mainly glucose and fructose in equal proportions with a small amount of residual sucrose. Other than being a carbohydrate source, HTM also provides abundant vitamins and other growth factors required for microbial growth [80,92].

In some instances, microorganisms may require vitamins to be present in the cultivation medium which can be found in the supplemented complex nutrient sources, whereas others can be cultivated in a medium devoid of vitamins [93]. Vitamins are growth factors required by most microorganisms for the production of enzyme cofactors [74,94]. Other than vitamins, microorganisms also require trace elements for their growth. Trace elements form part of enzymes and co-factors and they aid in the catalysis of reactions and maintenance of protein structures [74,95]. Supplementation of exotic trace elements and vitamins can be costly and are therefore avoided if cheaper nutrient sources can satisfy the essential requirements for

Other than an influence on growth, the type of growth medium used in a production process also influences physical parameters such as mass transfer and the formation of foam. Growth media rich in nitrogen sources usually result in increased foam formation [96]. In addition the sparging of gas through the growth medium and agitation at high speeds results in excess foam formation, in oxygen intensive processes. This reduces the efficiency of gaseous exchange at the surface of the culture, as a barrier is formed between the culture and the gases present in the headspace of the vessel [97,98]. Additionally, cells and the culture medium can be lost in the foam phase in the event of vessel overflow. The sensitivity of microorganisms to antifoam toxicity is an important factor that must be considered during the development of production

processes; as it can result in a significant decrease of the process performance [98].

Once a suitable fermentation medium has been developed, optimization of physiological growth conditions such as temperature, pH and oxygen sufficiency are imperative, in order to successfully produce biological agents on a large scale. Temperature and pH have been reported to be amongst the most important environmental parameters which control the activities and growth rates of many microorganisms as it governs all the physiological processes. The impact of temperature has been observed at the cellular level, and can either increase or decrease the catalytic activity of pertinent metabolic and digestive enzymes [99-102]. It has been reported that the alteration of growth conditions to an unsuitable range can significantly increase the lag phase of a wide range of micro-organisms, which is highly undesirable when designing an efficient bioprocess strategy [104]. Since temperature affects microbial growth rate, it also affects the growth yield of a culture because the relative energy requirements for cell maintenance increases; when growth rates are reduced [105]. pH homeostasis is another important factor that needs to be considered during the growth of microorganisms [106]. For most microorganisms, there is an increase in growth rate between the minimum and the optimum pH levels and a corresponding decrease in growth rate

growth of biological agents in production processes.

218 Sustainable Aquaculture Techniques

These factors have an impact on the improved yield and productivity of a process and as a result the overall cost of the production process. In addition they also confer information of the functionality of the probiotic once it enters the host environment [50,90]. Therefore, bioprocesses are designed such that the overall process has increased cell yields, productivities and a lowered cost, which ultimately results in a feasible and economically attractive produc‐ tion process. It is essential that these requirements are met to ensure that biological agents can be affordably adopted for use in abalone aquaculture.

#### **5. Processing of probiotics into market acceptable products**

Once the relevant biological agents have been successfully cultivated at a large scale, the resultant fermentation broth needs to be recovered efficiently to be utilized in subsequent processing and formulation steps [113,114]. The downstream process has a major influence on product commercialization as major constraints in most processes are embedded in harvesting and formulation costs [115,116]. This includes key aspects such as maximising recovery and preservation of viability, which are essential, in terms of applying an effective biological agent, especially in aquatic systems [117]. In addition, it is also vital to ensure that the final product to be administered to the host aligns with end user requirements such as stability, consistency, easy application, efficacy and affordability [115,118,119]. As a consequence; robust costeffective choices of process steps and ingredients, dictated by the end product characteristics, are necessary to improve the commercial success of newly developed biological agents [115].

The main objective for downstream processing is to minimise the number of unit operations involved in the process, thus reducing overall process and validation costs, while also simplifying ease and economy of process automation [115]. An additional consideration is the final anticipated form of the end product which has implications on the choice of process options while meeting customer expectations (Figure 2) [120]. The downstream process unit operations, completes the process chain; from the upstream fermentation to the end product. It is therefore considered to be an extremely important prerequisite for commercialization of probiotic technologies. Regrettably, published literature regarding downstream processing and formulation for commercially available products is very limited [115,119].

should seamlessly integrate into standard food production and farming activities [115,129]. Formulations of biological agents can be broadly classified into either dry solids in various forms, or liquid suspensions or emulsions [130]. The inclusion of additives that enhance process-ability eco-friendliness and customer acceptance of the final product are also impor‐ tant considerations [115]. Any potential impact to the host, environment and even end product

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In the case of a probiotic product, the formulation needs to encompass ingredients that aid viability and growth of the cells in its intended application. Sugars and proteins are normally the key nutrients that support the stability of cell preparation. It also further provides a protective layer for the cells, preventing death and assists in the recovery of injured cells during processing [115,132,133]. The addition of nutrients was also shown to improve storage of a *Pseudomonas fluorescens* F113 strain [134] and a *Bacillus megaterium* [135] for use in biocontrol applications. Appropriate formulations can facilitate easier processing and influence the

Processing options for abalone biological agents, will include, both dry and liquid product forms (Figure 2). Due to the intended use of the selected isolates as a living cell preparation, product options with a high stability are considered to be most appealing. The application of fresh cells that need to be routinely produced is not attractive as there is significant risk in ensuring consistent inclusion into the abalone feed [135]. This complicates the processing segment of the technology to a large extent, as innovative ways of ensuring and maintaining cell viabilities are required. Potential options for commercial processes to stabilize these probiotic products include refrigeration, freezing, freeze drying, spray drying and low temperature fluidised bed agglomeration. Refrigerated and frozen cultures occupy large storage volumes and demand higher storage and shipment costs in contrast to dry cultures which are an economic and practical alternative; however, some microorganisms are highly vulnerable to death when any form of drying is carried out [117,136,137]. An alternate approach is to concentrate the product into a convenient dosage quantity and form that reduces the bulk logistics burden for products that are not amenable to drying. Low temperature drying processes such as freeze drying are suitable for higher value, heat labile bio-products, but is costly, time consuming and discontinuous for bulk production compared with moderate temperature drying processes [131,138]. Spray drying processes are widely used for large scale drying of products; however, higher drying temperatures decrease the viability of microbes faster than lower drying temperatures [131,139]. Spray drying requires high temperatures to facilitate water evaporation, which can cause irreversible changes to structural and functional integrity of the intended biological product and reduce viability and activity of the organisms itself [140,141]. Spray drying also has a high energy demand requiring 2500 to 10 000 J.g-1 of evaporated water and is therefore not the most attractive process option for drying of abalone

There are several reports on the use of agglomeration as a commercially viable process option for moderate temperature drying of biological material, mainly due to excellent mass and heat transfer characteristics [133,139,142]. During agglomeration, a mixture is atomised to form

C) which results in coating of the probiotic cells

consumer, must be thoroughly investigated prior to application [131].

stability and appeal of an end product in large scale production [70].

probiotics [122].

droplets at lower temperature (typically 30-40o

**Figure 2.** Schematic illustration of potential downstream process unit options [121].

The harvesting efficacy of a unit operation governs the marketability of a product, as it affects the potency and aids in any potential further processing during formulation and product development. The goal of the recovery process is to produce a product of acceptable quality, in compliance with any regulatory and safety requirements, at an acceptable cost [120]. Process options for cell harvesting from fermentation broth include microfiltration, sedimentation, flocculation and ultrafiltration (Figure 2) [116,122]. Flocculation and flotation using surface action or electrical charge have been reported to be inefficient in the separation of bacterial cells [120]. Although there have been some positive reports for harvesting using ultra-filtration [116], the most widely used process remains centrifugation [123-125]. Among all options, centrifugation appears to be the most viable alternative for cell harvesting resulting in recoveries of ~ 99% [115,126]. Usually, product intermediates are anticipated to be a high cell concentration paste containing the biological agent. Tube centrifugation has been considered to be a useful process that can yield a lower moisture paste thus minimizing the energy required in later stage drying steps if necessary [127,128].

Subsequent to cell separation, formulation generates a crucial link between production and application of probiotics (Figure 2). This crucial step dictates process-ability, economy, shelf life, and efficacy as well as ease of application and provision of a product form that commands customer appeal. Intelligent formulations will allow innovation in application techniques using unique combinations of active ingredients, adjuvants or inerts and the end product should seamlessly integrate into standard food production and farming activities [115,129]. Formulations of biological agents can be broadly classified into either dry solids in various forms, or liquid suspensions or emulsions [130]. The inclusion of additives that enhance process-ability eco-friendliness and customer acceptance of the final product are also impor‐ tant considerations [115]. Any potential impact to the host, environment and even end product consumer, must be thoroughly investigated prior to application [131].

probiotic technologies. Regrettably, published literature regarding downstream processing

and formulation for commercially available products is very limited [115,119].

• Centrifugation • Flocculation/Flotation

• Formulation • Addition of protectants

• Spray drying • Freeze drying

Dry product form

Drying

• Tablet • Powder • Pellet

Liquid product form

• Fluidised bed agglomeration

**Figure 2.** Schematic illustration of potential downstream process unit options [121].

required in later stage drying steps if necessary [127,128].

The harvesting efficacy of a unit operation governs the marketability of a product, as it affects the potency and aids in any potential further processing during formulation and product development. The goal of the recovery process is to produce a product of acceptable quality, in compliance with any regulatory and safety requirements, at an acceptable cost [120]. Process options for cell harvesting from fermentation broth include microfiltration, sedimentation, flocculation and ultrafiltration (Figure 2) [116,122]. Flocculation and flotation using surface action or electrical charge have been reported to be inefficient in the separation of bacterial cells [120]. Although there have been some positive reports for harvesting using ultra-filtration [116], the most widely used process remains centrifugation [123-125]. Among all options, centrifugation appears to be the most viable alternative for cell harvesting resulting in recoveries of ~ 99% [115,126]. Usually, product intermediates are anticipated to be a high cell concentration paste containing the biological agent. Tube centrifugation has been considered to be a useful process that can yield a lower moisture paste thus minimizing the energy

Subsequent to cell separation, formulation generates a crucial link between production and application of probiotics (Figure 2). This crucial step dictates process-ability, economy, shelf life, and efficacy as well as ease of application and provision of a product form that commands customer appeal. Intelligent formulations will allow innovation in application techniques using unique combinations of active ingredients, adjuvants or inerts and the end product

Cell separation

• Filtration

220 Sustainable Aquaculture Techniques

In the case of a probiotic product, the formulation needs to encompass ingredients that aid viability and growth of the cells in its intended application. Sugars and proteins are normally the key nutrients that support the stability of cell preparation. It also further provides a protective layer for the cells, preventing death and assists in the recovery of injured cells during processing [115,132,133]. The addition of nutrients was also shown to improve storage of a *Pseudomonas fluorescens* F113 strain [134] and a *Bacillus megaterium* [135] for use in biocontrol applications. Appropriate formulations can facilitate easier processing and influence the stability and appeal of an end product in large scale production [70].

Processing options for abalone biological agents, will include, both dry and liquid product forms (Figure 2). Due to the intended use of the selected isolates as a living cell preparation, product options with a high stability are considered to be most appealing. The application of fresh cells that need to be routinely produced is not attractive as there is significant risk in ensuring consistent inclusion into the abalone feed [135]. This complicates the processing segment of the technology to a large extent, as innovative ways of ensuring and maintaining cell viabilities are required. Potential options for commercial processes to stabilize these probiotic products include refrigeration, freezing, freeze drying, spray drying and low temperature fluidised bed agglomeration. Refrigerated and frozen cultures occupy large storage volumes and demand higher storage and shipment costs in contrast to dry cultures which are an economic and practical alternative; however, some microorganisms are highly vulnerable to death when any form of drying is carried out [117,136,137]. An alternate approach is to concentrate the product into a convenient dosage quantity and form that reduces the bulk logistics burden for products that are not amenable to drying. Low temperature drying processes such as freeze drying are suitable for higher value, heat labile bio-products, but is costly, time consuming and discontinuous for bulk production compared with moderate temperature drying processes [131,138]. Spray drying processes are widely used for large scale drying of products; however, higher drying temperatures decrease the viability of microbes faster than lower drying temperatures [131,139]. Spray drying requires high temperatures to facilitate water evaporation, which can cause irreversible changes to structural and functional integrity of the intended biological product and reduce viability and activity of the organisms itself [140,141]. Spray drying also has a high energy demand requiring 2500 to 10 000 J.g-1 of evaporated water and is therefore not the most attractive process option for drying of abalone probiotics [122].

There are several reports on the use of agglomeration as a commercially viable process option for moderate temperature drying of biological material, mainly due to excellent mass and heat transfer characteristics [133,139,142]. During agglomeration, a mixture is atomised to form droplets at lower temperature (typically 30-40o C) which results in coating of the probiotic cells on the surface of suitable carrier particles. Probiotic cell cultures are subjected to evaporative cooling during the warming up and constant-rate drying periods and therefore have a substantially lower temperature than the drying air, resulting in increased viability [139.]. Advantages of fluidised bed drying over freeze and spray drying include lower investment and maintenance costs, ease of large scale continuous production, rapid exchange of heat, minimising heat damage, rapid mixing providing near isothermal conditions and uniform end product [122,139,143]. Due to these reasons fluidized bed drying has become an accepted method for large scale production of heat labile biological materials, however, viability losses have still been reported [142].

[117]. The soaking method uses preformed feed pellets, which are soaked in a saline broth containing the probiotic organism at a desired concentration [57,149]. Soaked pellets are then dried and stored appropriately for further use. A modified method of soaking, whereby actual fronds of macroalgal species, *Macrocystis integrifolia* were soaked in preconditioned tanks containing bacterial cells were used by [58]. Upon aeration of these tanks, the bacteria were allowed to colonize the surface of the fronds, and were thereafter fed to test abalone. In other studies, the spraying of feeds with probiotic cells was also carried out [153]. In addition, [154] described methods of spraying dried feeds with cells that were placed onto plastic trays. Lastly, the bathing option of probiotics involving the application of living cells directly to the rearing water has been used [155]. All potential mechanisms of probiotic inclusion into the feed must be suitably ratified in order to maximize the potential of the technology. The method selected, should have the ability to integrate easily into existing feed production process, and should in no way negatively impact on the host or the rearing environment. The journey taken to produce a commercially viable probiotic product is by no means forthright. It encompasses innovative process design, effective cell production and formulation technologies, as well as successful maintenance of cell viability and stability. Once all the identified challenges have been effectively overcome, the uptake of this technology and the associated boom in abalone export

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**6. Considerations for application of biological agents in abalone**

potential contamination by common food pathogenic bacteria [68].

Over the past two decades, the applicability of probiotics as solutions to various aquaculture related challenges have been widely reported. However, it is still imperative to consider the safety issues associated with the use of these probiotic products [29,52,156]. Safety is the state of being certain that a biological agent used will not have undesirable effects under defined conditions. The production system in which the cell cultivations are conducted must also maintain high levels of sterility to easily facilitate a monoseptic culture, as well as reduce any

Once the selected culture has been accurately identified and deposited into a culture reposi‐ tory, extensive literature searches and relevant scientific experimentation must be carried out in order to obtain information on the biological agent of interest. As the number of isolated probiotic species increase, it is important not to assume biosafety levels and characteristics of each probiotic strain. Furthermore, it is recommended that the exact mode of action of the probiotic organisms be elucidated, in order to achieve the desirable effect when applied to the host system. It has been suggested that prior to incorporation of these organisms in abalone aquaculture, it is important to carefully assess the probiotics for pathogenicity, infectivity, toxicity and their resultant metabolite production for quality assurance [157]. These critical factors have sometimes been overlooked, and have consequently led to the failure of probiotic technologies in some instances [41]. In many case studies, the use of LAB as probiotics have been rendered safe, however, in recent times there have been reports of disease-causing members belonging to *Lactococcus*, *Vagococcus* or *Carnobacterium* families [158]. Additionally,

by means of aquaculture will be inevitable.

**aquaculture**

In addition to production and formulation of user-friendly product through a downstream process, the stability and consistency of product intermediates and the end product itself are crucial requirements for successful commercialization [144]. A loss of bioactivity in a product, that is intended to be applied in a viable state, will definitely incur a great deal of process complications and as a result impart a direct increase in production cost [141]. In a typical production process, the lag time between process operations can vary due to process integra‐ tion and scheduling during manufacture. Thus storage conditions and the addition of specific stabilizers may be required to prevent vegetative growth or the appearance of contamination in the probiotic product or its relevant intermediates [145].

The problems of stability during processing, storage and after application have stalled development of biologically based products [146]. Accelerated aging studies based on the methodology of death rate plots at different temperatures to generate thermal resistance curves have been shown to be a useful technique for predicting stability [147]. Temperature depend‐ ant half-life plots can be generated to predict stability of the probiotic product intermediates as well as the end product. This approach has however only been used to a limited extent [121,123,135].

After addressing the considerations of the actual production process, success of the technology is still not a certainty. It is imperative, that in order to realise the success of using this new technology, the probiotic product must be supplied as a live cell preparation, and must be able to survive not only the feed production process, but also maintain viability in the digestive tract of the host [44,47]. Many probiotics have been successfully applied to land-based animal production practices, however, the aquaculture industry are faced with further limitations as a result of continuous water exposure [148]. The method of incorporation selected must overcome challenges faced in feed production and the mariculture system itself; such as major losses of viability, in order to achieve the desired effect of the probiotic technology.

There have been various methods applied to successfully administer viable probiotics to a host in aquaculture environments. These include mixing, soaking, spraying, vacuum infusion, extrusion and bathing [148]. Incorporation of the probiotic into the feed is almost always the method of choice, except when bioremediation agents are added directly to the water. Mixing is the most commonly used method and involves the incorporation of the probiotic into the dry ingredients of the feed during the feed production process. Many researchers [56,150,151] have successfully used this method; however, probiotics that are susceptible to excessive heating and drying during the feed production process do not show high rates of survival [117]. The soaking method uses preformed feed pellets, which are soaked in a saline broth containing the probiotic organism at a desired concentration [57,149]. Soaked pellets are then dried and stored appropriately for further use. A modified method of soaking, whereby actual fronds of macroalgal species, *Macrocystis integrifolia* were soaked in preconditioned tanks containing bacterial cells were used by [58]. Upon aeration of these tanks, the bacteria were allowed to colonize the surface of the fronds, and were thereafter fed to test abalone. In other studies, the spraying of feeds with probiotic cells was also carried out [153]. In addition, [154] described methods of spraying dried feeds with cells that were placed onto plastic trays. Lastly, the bathing option of probiotics involving the application of living cells directly to the rearing water has been used [155]. All potential mechanisms of probiotic inclusion into the feed must be suitably ratified in order to maximize the potential of the technology. The method selected, should have the ability to integrate easily into existing feed production process, and should in no way negatively impact on the host or the rearing environment. The journey taken to produce a commercially viable probiotic product is by no means forthright. It encompasses innovative process design, effective cell production and formulation technologies, as well as successful maintenance of cell viability and stability. Once all the identified challenges have been effectively overcome, the uptake of this technology and the associated boom in abalone export by means of aquaculture will be inevitable.

on the surface of suitable carrier particles. Probiotic cell cultures are subjected to evaporative cooling during the warming up and constant-rate drying periods and therefore have a substantially lower temperature than the drying air, resulting in increased viability [139.]. Advantages of fluidised bed drying over freeze and spray drying include lower investment and maintenance costs, ease of large scale continuous production, rapid exchange of heat, minimising heat damage, rapid mixing providing near isothermal conditions and uniform end product [122,139,143]. Due to these reasons fluidized bed drying has become an accepted method for large scale production of heat labile biological materials, however, viability losses

In addition to production and formulation of user-friendly product through a downstream process, the stability and consistency of product intermediates and the end product itself are crucial requirements for successful commercialization [144]. A loss of bioactivity in a product, that is intended to be applied in a viable state, will definitely incur a great deal of process complications and as a result impart a direct increase in production cost [141]. In a typical production process, the lag time between process operations can vary due to process integra‐ tion and scheduling during manufacture. Thus storage conditions and the addition of specific stabilizers may be required to prevent vegetative growth or the appearance of contamination

The problems of stability during processing, storage and after application have stalled development of biologically based products [146]. Accelerated aging studies based on the methodology of death rate plots at different temperatures to generate thermal resistance curves have been shown to be a useful technique for predicting stability [147]. Temperature depend‐ ant half-life plots can be generated to predict stability of the probiotic product intermediates as well as the end product. This approach has however only been used to a limited extent

After addressing the considerations of the actual production process, success of the technology is still not a certainty. It is imperative, that in order to realise the success of using this new technology, the probiotic product must be supplied as a live cell preparation, and must be able to survive not only the feed production process, but also maintain viability in the digestive tract of the host [44,47]. Many probiotics have been successfully applied to land-based animal production practices, however, the aquaculture industry are faced with further limitations as a result of continuous water exposure [148]. The method of incorporation selected must overcome challenges faced in feed production and the mariculture system itself; such as major

losses of viability, in order to achieve the desired effect of the probiotic technology.

There have been various methods applied to successfully administer viable probiotics to a host in aquaculture environments. These include mixing, soaking, spraying, vacuum infusion, extrusion and bathing [148]. Incorporation of the probiotic into the feed is almost always the method of choice, except when bioremediation agents are added directly to the water. Mixing is the most commonly used method and involves the incorporation of the probiotic into the dry ingredients of the feed during the feed production process. Many researchers [56,150,151] have successfully used this method; however, probiotics that are susceptible to excessive heating and drying during the feed production process do not show high rates of survival

have still been reported [142].

222 Sustainable Aquaculture Techniques

[121,123,135].

in the probiotic product or its relevant intermediates [145].

### **6. Considerations for application of biological agents in abalone aquaculture**

Over the past two decades, the applicability of probiotics as solutions to various aquaculture related challenges have been widely reported. However, it is still imperative to consider the safety issues associated with the use of these probiotic products [29,52,156]. Safety is the state of being certain that a biological agent used will not have undesirable effects under defined conditions. The production system in which the cell cultivations are conducted must also maintain high levels of sterility to easily facilitate a monoseptic culture, as well as reduce any potential contamination by common food pathogenic bacteria [68].

Once the selected culture has been accurately identified and deposited into a culture reposi‐ tory, extensive literature searches and relevant scientific experimentation must be carried out in order to obtain information on the biological agent of interest. As the number of isolated probiotic species increase, it is important not to assume biosafety levels and characteristics of each probiotic strain. Furthermore, it is recommended that the exact mode of action of the probiotic organisms be elucidated, in order to achieve the desirable effect when applied to the host system. It has been suggested that prior to incorporation of these organisms in abalone aquaculture, it is important to carefully assess the probiotics for pathogenicity, infectivity, toxicity and their resultant metabolite production for quality assurance [157]. These critical factors have sometimes been overlooked, and have consequently led to the failure of probiotic technologies in some instances [41]. In many case studies, the use of LAB as probiotics have been rendered safe, however, in recent times there have been reports of disease-causing members belonging to *Lactococcus*, *Vagococcus* or *Carnobacterium* families [158]. Additionally,

strain testing of potential probiotics should encompass the robustness of the product against process fluctuations under farm conditions and confirmation of non-transmission of drug resistance genes or virulence plasmids [159]. Another barrier preventing the worldwide adoption of this technology, relates to the absence of efficacy data, which as a result casts a shadow of doubt over the technology, thereby hindering its uptake by the aqua-culturists.

**Author details**

**References**

Ghaneshree Moodley1,2\*, Lethabo Mashigo1

1 CSIR Biosciences, Pretoria, South Africa

Technology, Durban, South Africa

2005; 71(8) 4307-4317.

\*Address all correspondence to: GMoodley@csir.co.za

, Rajesh Lalloo1

2 Department of Biotechnology & Food, Faculty of Applied Sciences, Durban University of

[1] Marques A., Dinh T., Ioakeimidis C., Huys G., Swings J., Verstraete W., Dhont P., Sorgeloos, P. and Bossier, P. Effects Of Bacteria On *Artemia* Cultured In Different Gnotobiotic Environments. Journal of Applied and Environmental Microbiology

[2] Subasinghe RP. Epidemiological Approach to Aquatic Animal Health Management: Opportunities and Challenges for Developing Countries to Increase Aquatic Produc‐

[4] Britz PJ. A study on the Status of Aquaculture Production and Trade in South Africa. Volume 2: Growth Potential of the South African Aquaculture Industry and Recom‐ mendations for Sector Development. A report for the Department of trade and In‐

[5] Olafsen JA. Interactions between Fish Larvae and Bacteria in Marine Aquaculture.

[6] Gordon HR and Cook PA. World Abalone Fisheries and Aquaculture Update: Sup‐

[7] Stanford J. Aqua Culture Ambition: South African Aquaculture Industry Is Heading

[8] Reddy-Lopata K., Auerswald L. and Cook P. Ammonia Toxicity and Its Effect on the Growth of the South African Abalone *Haliotis Midae Linnaeus*. Aquaculture 2006;

[9] Troell M., Robertson-Andersson D., Anderson R.J., Bolton J.J., Maneveldt G., Halling C and Probyn T. Abalone Faming In South Africa: An Overview With Perspectives On Kelp Resources, Abalone Feed, Potential For On-Farm Seaweed Production And

ply and Market Dynamics. Journal of Shellfish Research 2004; 23 935-939.

tion through Aquaculture. Preventative Veterinary Medicine 2005; 67 117-124.

[3] FAO. The State Of World Fisheries and Aquaculture. Rome. 2012; 209pp.

dustry produced by Enviro-fish Africa (Pty.) Ltd. 2007; 24p.

For Export Boom. Engineering News 16-17 August. 2004; 6-12.

Socio- Economic Importance. Aquaculture 2006; 257 266-281.

Aquaculture 2001; 200(1-2) 223-247.

261(2) 678-687.

and Suren Singh2

http://dx.doi.org/10.5772/57197

225

Application of Biological Agents in Abalone Aquaculture: A South African Perspective

### **7. The impact and benefits of the application of biological agents in abalone aquaculture**

Most aquaculture industries are leaning towards the use of probiotic technology as a solution to many of the challenges faced by the industry. The basis for the inclusion of probiotics into the farming environments include higher survival rate of juvenile and adult abalone, improved feed uptake and conversion ratios resulting in faster growth rates, improved resistance to disease and reduced contribution to water pollution [47]. Using probiotics is more environ‐ mentally friendly because the effluent water is cleaner and there are significant improvements in the gut flora thus enhancing the overall immune response of the host and an increase in food assimilation [160]. However other factors such as temperature, enzyme levels, water quality and genetic resistance may have an effect on the success of the technology in the farming facility [29].

Thus far, the uptake of the technology is slow-moving. This is due to the fact that farmers expect the probiotic technology to operate using the same basis as antibiotic treatment technology, in that they require and anticipate fast rapid results [160]. However changes in the microbial ecosystems present in the environment is a gradual one; and requires the continuous addition of beneficial microorganisms to compound the desired effect [158]. In addition, ineffective and costly probiotic products previously offered in aquaculture has negatively tainted the impact of this technology. Some products include *Clostridium spp*., *Pseudomonas putida* and other potential human pathogens, and others consist of cell densities that are too low to deliver any sort of benefit to the host [160].

The commercial aquaculture sector will make a notable difference in terms creating jobs and economic development in most developing countries by embracing this activity. To date, South Africa has validated itself to be a key player in the abalone mariculture arena. With support from government,this industrycouldexperienceafurtherboom,andasaresult,assistinreducingthe high levels of unemployment that exists [27], particularly in coastal areas that can effectively participate in aquaculture practices. Abalone industries not only include direct employment at thefarmlevel,italsoindirectlysupports interlinkedbusinesses suchas theseaweedandabalone processing industries [9]. The challenge is to ensure long term sustainable growth of the abalone mariculture industry. The use of appropriate and safe biological agents in abalone mariculture has excellent potential to meet the new challenges of this important industry.

#### **Author details**

strain testing of potential probiotics should encompass the robustness of the product against process fluctuations under farm conditions and confirmation of non-transmission of drug resistance genes or virulence plasmids [159]. Another barrier preventing the worldwide adoption of this technology, relates to the absence of efficacy data, which as a result casts a shadow of doubt over the technology, thereby hindering its uptake by the aqua-culturists.

**7. The impact and benefits of the application of biological agents in abalone**

Most aquaculture industries are leaning towards the use of probiotic technology as a solution to many of the challenges faced by the industry. The basis for the inclusion of probiotics into the farming environments include higher survival rate of juvenile and adult abalone, improved feed uptake and conversion ratios resulting in faster growth rates, improved resistance to disease and reduced contribution to water pollution [47]. Using probiotics is more environ‐ mentally friendly because the effluent water is cleaner and there are significant improvements in the gut flora thus enhancing the overall immune response of the host and an increase in food assimilation [160]. However other factors such as temperature, enzyme levels, water quality and genetic resistance may have an effect on the success of the technology in the

Thus far, the uptake of the technology is slow-moving. This is due to the fact that farmers expect the probiotic technology to operate using the same basis as antibiotic treatment technology, in that they require and anticipate fast rapid results [160]. However changes in the microbial ecosystems present in the environment is a gradual one; and requires the continuous addition of beneficial microorganisms to compound the desired effect [158]. In addition, ineffective and costly probiotic products previously offered in aquaculture has negatively tainted the impact of this technology. Some products include *Clostridium spp*., *Pseudomonas putida* and other potential human pathogens, and others consist of cell densities that are too

The commercial aquaculture sector will make a notable difference in terms creating jobs and economic development in most developing countries by embracing this activity. To date, South Africa has validated itself to be a key player in the abalone mariculture arena. With support from government,this industrycouldexperienceafurtherboom,andasaresult,assistinreducingthe high levels of unemployment that exists [27], particularly in coastal areas that can effectively participate in aquaculture practices. Abalone industries not only include direct employment at thefarmlevel,italsoindirectlysupports interlinkedbusinesses suchas theseaweedandabalone processing industries [9]. The challenge is to ensure long term sustainable growth of the abalone mariculture industry. The use of appropriate and safe biological agents in abalone mariculture

has excellent potential to meet the new challenges of this important industry.

**aquaculture**

224 Sustainable Aquaculture Techniques

farming facility [29].

low to deliver any sort of benefit to the host [160].

Ghaneshree Moodley1,2\*, Lethabo Mashigo1 , Rajesh Lalloo1 and Suren Singh2

\*Address all correspondence to: GMoodley@csir.co.za

1 CSIR Biosciences, Pretoria, South Africa

2 Department of Biotechnology & Food, Faculty of Applied Sciences, Durban University of Technology, Durban, South Africa

#### **References**


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**Chapter 8**

**Use of Probiotic Bacteria against Bacterial and Viral**

The term "probiotic" was firstly used to denominate microorganisms that have effects on other microorganisms [1]. Etymologically, the term "probiotic" was originated from the Latin word "pro" which means "for" and the Greek word "bios" which means "life". The best known definition for probiotics was developed by the Food and Agriculture Organization (FAO), that defined them as live microorganisms which when administered in adequate amounts confer a health benefit on the host [2]. According to this description, the potential benefits are varied, and if probiotics were administered to shellfish or fish under intensive culture they could improve their production. It is known that virus and bacterial diseases/infections are one of the most important problems in aquaculture production at present. Probiotics can provide some solutions to this problem through different mechanisms or properties such as the production of inhibitory compounds such as bacteriocins, competition for adhesion sites with opportunistic or pathogen microorganisms, competition for nutrients with other bacteria or an improvement of the immune status (e.g. increase of production of immunoglobulins, acid phosphatase, antimicrobial peptides, improvement of cellular activities, etc.) [3-10]. Several reviews have already documented the benefits of probiotics in shellfish and fish but they mainly focused on their effects in the immune response. Thus, hypothetical and desired results of administering probiotics to shellfish or fish in culture will be improving their antiviral and antibacterial defences, which is the focus of the present review. Firstly, a brief description of probiotics is included, and then a review of the main used probiotics against pathogenic virus and bacteria for shellfish and finally, the same for fish. The novelty of this review is based on the shared ability of probiotics to control both viral and bacterial diseases in shellfish and fish

> © 2014 Cordero et al.; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

**Infections in Shellfish and Fish Aquaculture**

Héctor Cordero, María Ángeles Esteban and

Additional information is available at the end of the chapter

often share, which could be the basis for sustainable aquaculture.

Alberto Cuesta

**1. Introduction**

http://dx.doi.org/10.5772/57198

## **Use of Probiotic Bacteria against Bacterial and Viral Infections in Shellfish and Fish Aquaculture**

Héctor Cordero, María Ángeles Esteban and Alberto Cuesta

Additional information is available at the end of the chapter

http://dx.doi.org/10.5772/57198

#### **1. Introduction**

The term "probiotic" was firstly used to denominate microorganisms that have effects on other microorganisms [1]. Etymologically, the term "probiotic" was originated from the Latin word "pro" which means "for" and the Greek word "bios" which means "life". The best known definition for probiotics was developed by the Food and Agriculture Organization (FAO), that defined them as live microorganisms which when administered in adequate amounts confer a health benefit on the host [2]. According to this description, the potential benefits are varied, and if probiotics were administered to shellfish or fish under intensive culture they could improve their production. It is known that virus and bacterial diseases/infections are one of the most important problems in aquaculture production at present. Probiotics can provide some solutions to this problem through different mechanisms or properties such as the production of inhibitory compounds such as bacteriocins, competition for adhesion sites with opportunistic or pathogen microorganisms, competition for nutrients with other bacteria or an improvement of the immune status (e.g. increase of production of immunoglobulins, acid phosphatase, antimicrobial peptides, improvement of cellular activities, etc.) [3-10]. Several reviews have already documented the benefits of probiotics in shellfish and fish but they mainly focused on their effects in the immune response. Thus, hypothetical and desired results of administering probiotics to shellfish or fish in culture will be improving their antiviral and antibacterial defences, which is the focus of the present review. Firstly, a brief description of probiotics is included, and then a review of the main used probiotics against pathogenic virus and bacteria for shellfish and finally, the same for fish. The novelty of this review is based on the shared ability of probiotics to control both viral and bacterial diseases in shellfish and fish often share, which could be the basis for sustainable aquaculture.

© 2014 Cordero et al.; licensee InTech. This is a paper distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

#### **2. Probiotic bacteria**

There is a great diversity of tested probiotic bacteria, but only few of them have become in commercial probiotics (Table 1). Thus, further studies are mandatory to expand the use of laboratory described microorganisms with probiotic effects to the commercial level and then be used in the aquaculture industry. The procedure to test and market a probiotic is resumed in Figure 1.

Probiotics are usually consisting on bacteria but some other microorganisms such as yeast, microalgae or even some fungi. They are mainly used as living cells but some studies have also shown their benefits when supplied as heat-inactivated cells (also known as heat-killed cells), formalin-killed (FKC), freeze-dried, dead cells or cell-free supernatant (CFS). Among the vast number of probiotic species used most information relies on the use of *Bacillus* sp. and *Lactobacillus* sp. Different administration modes have been checked, as bath, intraperitoneal or intramuscular injection and in diet being the bath and diet those preferred for the use in the aquaculture. Moreover, more recently, for oral dietary administration the probiotics can be encapsulated in different ways. Besides that, *Artemia* and rotifers (two main diets larvae in marine larviculture) are usually enriched with probiotics in order to produce benefits in the

Use of Probiotic Bacteria against Bacterial and Viral Infections in Shellfish and Fish Aquaculture

http://dx.doi.org/10.5772/57198

241

fish/shellfish larvae.

**Figure 1.** Process for making commercial probiotics.


**Table 1.** List of commercial probiotics, including those for shellfish and fish.

Probiotics are usually consisting on bacteria but some other microorganisms such as yeast, microalgae or even some fungi. They are mainly used as living cells but some studies have also shown their benefits when supplied as heat-inactivated cells (also known as heat-killed cells), formalin-killed (FKC), freeze-dried, dead cells or cell-free supernatant (CFS). Among the vast number of probiotic species used most information relies on the use of *Bacillus* sp. and *Lactobacillus* sp. Different administration modes have been checked, as bath, intraperitoneal or intramuscular injection and in diet being the bath and diet those preferred for the use in the aquaculture. Moreover, more recently, for oral dietary administration the probiotics can be encapsulated in different ways. Besides that, *Artemia* and rotifers (two main diets larvae in marine larviculture) are usually enriched with probiotics in order to produce benefits in the fish/shellfish larvae.

**Figure 1.** Process for making commercial probiotics.

**2. Probiotic bacteria**

240 Sustainable Aquaculture Techniques

in Figure 1.

**Bactocell®**

**BioPlus®**

There is a great diversity of tested probiotic bacteria, but only few of them have become in commercial probiotics (Table 1). Thus, further studies are mandatory to expand the use of laboratory described microorganisms with probiotic effects to the commercial level and then be used in the aquaculture industry. The procedure to test and market a probiotic is resumed

**Commercial name Animal/Human Reference/Comments AlCareTM** Mammalian Contains *Bacillus licheniformis*

**Bactisubtil®** Human Contains *Bacillus cereus*

**BaoZyme-Aqua** Fish Contains *Bacillus subtilis*

**Bio-Kult®** Human Contains *B. subtilis*

**Biovicerin®** Human Contains *B. cereus*

**Domuvar** Human Contains *Bacillus* spp.

**Esporafeed Plus®** Swine Contains *B. cereus*

**Liqualife®** Fish Contains *Bacillus* spp. **Neoferm BS 10** Mammalian Contains *Bacillus clausii*

**SanoCare®** Fish Contains *Bacillus* spp. **SanoGuard®** Fish Contains *Bacillus* spp. **SanoLife®** Fish Contains *Bacillus* spp.

**Sustenex®** Human Contains *Bacillus coagulans*

**Table 1.** List of commercial probiotics, including those for shellfish and fish.

 **2B** Fish [73]

**Biogrow®** Mammalian Contains *Bacillus subtilis* and *B. licheniformis*

**Biostart®** Fish Contains a mix of *Bacillus* spp. and *Paenobacillus* sp.

**Biosporin®** Human Contains *B. subtilis* and *B. licheniformis*

**Bispan®** Human Contains *Bacillus polyfermenticus*

**Lactopure** Mammalian Contains *Lactobacillus sporogenes*

**Neolactoflorene** Human Contains *Lactobacillus* spp. and *Bacillus* spp.

 **PA 10** Fish [42]

**Alibio®** Fish [30]

**BGY-35** Fish [51]

**Cernivet®** Fish [85]

**Lactobacil** Fish [45]

**Sporolac** Fish [45]

**Toyocerin®** Fish [85]

**Ecomarine®** Shellfish

**Promarine®** Shellfish

#### **3. Probiotics against virus in shellfish**

Viral infections are one of the most important problems in aquaculture production. In the case of shellfish, probiotics might provide a good preventive solution to this problem since they promote the innate immune response, which is the only one attributed to be responsible for the resistance in these animals.

Several studies have been conducted in bivalves. In the case of Pacific oyster larvae (*Crassostrea*

the larvae prolonged their viability up to 144 hours indicating its benefits when used by bath

sp. OY15 for three weeks showed no effect in survival ratio after challenge with *Vibrio s*p. M183 [19]. It has been reported [20] that abalone (*Haliotis discus hannai*) specimens fed supplemented

showed a better survival rate (with mortalities of 27%-50% in WA64, and 30%-43% in WA65 compared with 77%-80% in the control group) when infected with *Vibrio harveyi*. In other research with other abalone specie, *Haliotis midae* specimens fed supplemented diet with a mix

showed a better survival ratio (62%) than control group specimens after intra-mantle injection of *Vibrio anguillarum* [21]. Further studies are still needed to broad the use of probiotics in

Among the shellfish, most of the studies have at this respect focused on shrimps. Thus, western

and *Pseudomonas synxantha* for eighty-four days and afterwards challenged with *V. harveyi*. *P. aeruginosa-*supplemented diet improved the survival rate of the western king prawns more effectively than *P. synxantha-*supplemented diet, and furthermore, administration of both probiotics in combination resulted in better results than when administering separately [22-23].

Most of the studies administering probiotics have been developed in white shrimp (*Litopenaeus vannamei*) at different development stages. For example, *Bacillus subtilis* E20 administered in

respectively, after the injection of pathogenic *V. alginolyticus* [24]. In juvenile specimens,

achieved a mortality of 18% against pathogenic infection of vibrios (including *V. harveyi*, *V. alginolyticus* and *V. parahaemolyticus*) while the control group mortality exceeded of 50% [25]. In other research, juvenile specimens fed supplemented diets containing *V. alginolyticus* UTM 102, *B. subtilis* UTM 126, *Roseobacter gallaeciensis* SLV03 or *Pseudomonas aestumarina* SLV22,

after immersion with *Vibrio parahaemolyticus* PS-017 compared with the control group (33%) [26]. In adult specimens of *L. vannamei* fed supplemented diet with 3×105 cfu of the probiotic *Vibrio gazogenes* per shrimp showed a decrease of mortality after infection with *Vibrio* spp. (including *V. harveyi*, *V. anguillarum* and *V. alginolyticus*) [27]. In addition, the inhibitory effect was also demonstrated in a *in vitro* assay [27]. Other recent work [28] has been carried out with

*Bacillus subtilis* strains) for 2 months, and afterwards each shrimp was injected with 107

*Vibrio harveyi*. Results indicate that cumulative mortality of the control group was 63.3%, whereas in the groups fed probiotics were of 20% and 33.3%, for the group fed BM8 or BM5 strains, respectively. Cumulative mortality also decreased in white shrimp fed a supplemented diet with 1010 cfu kg-1 of *Lactobacillus plantarum* after injection with *V. alginolyticus* [29].

cfu kg-1 increased the survival rates at 13.3%, 16.7% and 20%

cfu g-1 diet for four weeks showed low mortality (between 17%-22%)

cfu g-1 (BM5) and 108

cfu g-1 of *Shewanella colwelliana* WA64 and *Shewanella oyellana* WA65 for four weeks

[18]. By contrast, *C. virginica* specimens fed supplemented diets containing 104

of three unknown probiotic strains (SY9, SS1 and AY1) at doses of 107

king prawn (*Penaeus latisulcatus*) specimens fed 20×105

cfu ml-1 of the pathogenic *Vibrio tubiashii* reached a total mortality in just

Use of Probiotic Bacteria against Bacterial and Viral Infections in Shellfish and Fish Aquaculture

cfu ml-1 of the probiotic *Aeromonas media* A199 strain

cfu ml-1 of *Vibrio*

243

http://dx.doi.org/10.5772/57198

cfu ml-1 for two weeks

cfu kg-1 diet of *Pseudomonas aeruginosa*

cfu g-1 diet of *Bacillus subtilis* UTM126

cfu g-1 (BM8) (two

cfu of

*gigas*) exposed to 105

diet with 109

the diet at 106

2 days, whilst in combination with 104

bivalves against bacterial diseases.

, 107

separately, at doses of 105

and 108

commercial white shrimp fed supplemented diet with 105

white shrimp fed a supplemented diet containing 105

Mainly seven viral diseases are known in shellfish which are: white spot syndrome virus (WSSV), lymphocystis disease virus (LCDV), infectious hypodermal and hematopoietic necrosis virus (IHHNV), taura syndrome virus (TSV), yellow head disease virus (YHV), infectious myonecrosis virus (IMNV) and *Macrobrachium rosenbergii* nodavirus (MrNV). Unfortunately, all the studies have focused on the potential preventive effects of few probiotics on the pacific white shrimp (*Litopenaus vannamei*) resistance against WSSV. In a single study it was demonstrated that bath treatment of *L. vannamei* specimens with the probiotic *Vibrio alginolyticus* at a dose of 105 cfu ml-1 showed a higher rate survival against WSSV compared to those non exposed to the probiotic [11]. Interestingly, most of the information comes from studies using dietary administration of the probiotics which results the most desired for aquaculture of shellfish. It has been reported that survival of *L. vannamei* specimens fed supplemented diets containing 105 cfu g-1 of a mixture formed by lactic acid bacteria (BAL3, BAL7, BC1 and CIB1) failed to protect against WSSV infections [12]. By contrast, dietary administration of 1010 cfu g-1 of *Bacillus* OJ in *L. vannamei* specimens produced significantly higher survival after challenge by WSSV [13]. It has also been reported that dietary adminis‐ tration of *Pediococcus pentosaceus* and *Staphylococcus hemolyticus* to *L. vannamei* specimens showed a decrease in the prevalence of WSSV, but not IHHNV [14]. Further studies including more shellfish species and virus are necessary in order to find potential solutions for the viral diseases found under their intensive culture.

#### **4. Probiotics against bacteria in shellfish**

In the case of bacterial diseases much more studies have focused on the benefits of the use of probiotics for shellfish species. Moreover, and in contrast to the viral pathogens described above, more shellfish species have focused the studies about the use of probiotics. Herein we will summarize the main findings about the potential use of probiotics against bacterial diseases grouped by shellfish species.

A first attempt to describe the probiotic potential of a microorganism comes from *in vitro* studies. Thus, it has been demonstrated that *Pseudoalternomonas* sp. strains DIT09, DIT44 and DIT46 isolated from *Peromytilus purpuratus* showed bacteriostatic anti-*Vibrio parahaemolyticus* activity [15] but their *in vivo* effects have not been tested yet. In a similar way, *Roseobacter* sp. strain BS107 isolated form the scallop (*Pecten maximus*) showed antibacterial activity against several pathogenic *Vibrio* sp. [16] as well as the probiotic *Alteromonas haloplanktis* obtained from *Argopecten purpuratus* larvae specimens [17]. Further preliminary studies of this kind are worthy to be taken in the future and prior to those conducted *in vivo*.

Several studies have been conducted in bivalves. In the case of Pacific oyster larvae (*Crassostrea gigas*) exposed to 105 cfu ml-1 of the pathogenic *Vibrio tubiashii* reached a total mortality in just 2 days, whilst in combination with 104 cfu ml-1 of the probiotic *Aeromonas media* A199 strain the larvae prolonged their viability up to 144 hours indicating its benefits when used by bath [18]. By contrast, *C. virginica* specimens fed supplemented diets containing 104 cfu ml-1 of *Vibrio* sp. OY15 for three weeks showed no effect in survival ratio after challenge with *Vibrio s*p. M183 [19]. It has been reported [20] that abalone (*Haliotis discus hannai*) specimens fed supplemented diet with 109 cfu g-1 of *Shewanella colwelliana* WA64 and *Shewanella oyellana* WA65 for four weeks showed a better survival rate (with mortalities of 27%-50% in WA64, and 30%-43% in WA65 compared with 77%-80% in the control group) when infected with *Vibrio harveyi*. In other research with other abalone specie, *Haliotis midae* specimens fed supplemented diet with a mix of three unknown probiotic strains (SY9, SS1 and AY1) at doses of 107 cfu ml-1 for two weeks showed a better survival ratio (62%) than control group specimens after intra-mantle injection of *Vibrio anguillarum* [21]. Further studies are still needed to broad the use of probiotics in bivalves against bacterial diseases.

**3. Probiotics against virus in shellfish**

the resistance in these animals.

242 Sustainable Aquaculture Techniques

*alginolyticus* at a dose of 105

supplemented diets containing 105

diseases found under their intensive culture.

diseases grouped by shellfish species.

**4. Probiotics against bacteria in shellfish**

Viral infections are one of the most important problems in aquaculture production. In the case of shellfish, probiotics might provide a good preventive solution to this problem since they promote the innate immune response, which is the only one attributed to be responsible for

Mainly seven viral diseases are known in shellfish which are: white spot syndrome virus (WSSV), lymphocystis disease virus (LCDV), infectious hypodermal and hematopoietic necrosis virus (IHHNV), taura syndrome virus (TSV), yellow head disease virus (YHV), infectious myonecrosis virus (IMNV) and *Macrobrachium rosenbergii* nodavirus (MrNV). Unfortunately, all the studies have focused on the potential preventive effects of few probiotics on the pacific white shrimp (*Litopenaus vannamei*) resistance against WSSV. In a single study it was demonstrated that bath treatment of *L. vannamei* specimens with the probiotic *Vibrio*

those non exposed to the probiotic [11]. Interestingly, most of the information comes from studies using dietary administration of the probiotics which results the most desired for aquaculture of shellfish. It has been reported that survival of *L. vannamei* specimens fed

BAL7, BC1 and CIB1) failed to protect against WSSV infections [12]. By contrast, dietary administration of 1010 cfu g-1 of *Bacillus* OJ in *L. vannamei* specimens produced significantly higher survival after challenge by WSSV [13]. It has also been reported that dietary adminis‐ tration of *Pediococcus pentosaceus* and *Staphylococcus hemolyticus* to *L. vannamei* specimens showed a decrease in the prevalence of WSSV, but not IHHNV [14]. Further studies including more shellfish species and virus are necessary in order to find potential solutions for the viral

In the case of bacterial diseases much more studies have focused on the benefits of the use of probiotics for shellfish species. Moreover, and in contrast to the viral pathogens described above, more shellfish species have focused the studies about the use of probiotics. Herein we will summarize the main findings about the potential use of probiotics against bacterial

A first attempt to describe the probiotic potential of a microorganism comes from *in vitro* studies. Thus, it has been demonstrated that *Pseudoalternomonas* sp. strains DIT09, DIT44 and DIT46 isolated from *Peromytilus purpuratus* showed bacteriostatic anti-*Vibrio parahaemolyticus* activity [15] but their *in vivo* effects have not been tested yet. In a similar way, *Roseobacter* sp. strain BS107 isolated form the scallop (*Pecten maximus*) showed antibacterial activity against several pathogenic *Vibrio* sp. [16] as well as the probiotic *Alteromonas haloplanktis* obtained from *Argopecten purpuratus* larvae specimens [17]. Further preliminary studies of this kind are

worthy to be taken in the future and prior to those conducted *in vivo*.

cfu ml-1 showed a higher rate survival against WSSV compared to

cfu g-1 of a mixture formed by lactic acid bacteria (BAL3,

Among the shellfish, most of the studies have at this respect focused on shrimps. Thus, western king prawn (*Penaeus latisulcatus*) specimens fed 20×105 cfu kg-1 diet of *Pseudomonas aeruginosa* and *Pseudomonas synxantha* for eighty-four days and afterwards challenged with *V. harveyi*. *P. aeruginosa-*supplemented diet improved the survival rate of the western king prawns more effectively than *P. synxantha-*supplemented diet, and furthermore, administration of both probiotics in combination resulted in better results than when administering separately [22-23].

Most of the studies administering probiotics have been developed in white shrimp (*Litopenaeus vannamei*) at different development stages. For example, *Bacillus subtilis* E20 administered in the diet at 106 , 107 and 108 cfu kg-1 increased the survival rates at 13.3%, 16.7% and 20% respectively, after the injection of pathogenic *V. alginolyticus* [24]. In juvenile specimens, commercial white shrimp fed supplemented diet with 105 cfu g-1 diet of *Bacillus subtilis* UTM126 achieved a mortality of 18% against pathogenic infection of vibrios (including *V. harveyi*, *V. alginolyticus* and *V. parahaemolyticus*) while the control group mortality exceeded of 50% [25]. In other research, juvenile specimens fed supplemented diets containing *V. alginolyticus* UTM 102, *B. subtilis* UTM 126, *Roseobacter gallaeciensis* SLV03 or *Pseudomonas aestumarina* SLV22, separately, at doses of 105 cfu g-1 diet for four weeks showed low mortality (between 17%-22%) after immersion with *Vibrio parahaemolyticus* PS-017 compared with the control group (33%) [26]. In adult specimens of *L. vannamei* fed supplemented diet with 3×105 cfu of the probiotic *Vibrio gazogenes* per shrimp showed a decrease of mortality after infection with *Vibrio* spp. (including *V. harveyi*, *V. anguillarum* and *V. alginolyticus*) [27]. In addition, the inhibitory effect was also demonstrated in a *in vitro* assay [27]. Other recent work [28] has been carried out with white shrimp fed a supplemented diet containing 105 cfu g-1 (BM5) and 108 cfu g-1 (BM8) (two *Bacillus subtilis* strains) for 2 months, and afterwards each shrimp was injected with 107 cfu of *Vibrio harveyi*. Results indicate that cumulative mortality of the control group was 63.3%, whereas in the groups fed probiotics were of 20% and 33.3%, for the group fed BM8 or BM5 strains, respectively. Cumulative mortality also decreased in white shrimp fed a supplemented diet with 1010 cfu kg-1 of *Lactobacillus plantarum* after injection with *V. alginolyticus* [29]. Moreover, the administration of a mixture of *Bacillus* (*B. endophyticus* YC3-b, *B. endophyticus* C2-2 and *B. tequilensis* YC5-2) to the water at doses of 0.1×106 cfu ml-1 to juvenile specimens resulted in a high survival ratio (33%) compared with the control group (9.5%) after challenge with *V. parahaemolyticus*. However, a commercial probiotic (Alibio) at the same dose that the *Bacillus* mix had no effect in survival ratio compared with the control group in *Litopenaeus vannamei* specimens [30]. *L. vannamei* specimens fed diet supplemented with two potential probiotics (strains C2 and B6) achieved a better survival ratio (44% and 50%) than control group (21%) after infection with *Vibrio harveyi* in stages from Myosis 3 to postlarvae 1 [31]. Strikingly, other microorganisms such as yeast have been also assayed as potential probiotics. Unfortu‐ nately, *L. vannamei* specimens fed *Saccharomyces cerevisiae*, *Phaffia rhodozyma* and *Saccharomyces exiguus* showed no significant different in survival ratio after infection with *V. harveyi* compared with control group specimens [32].

and infected with *Vibrio nigripulchritudo* SFn1 showed a mortality level of 25% in the probiotictreated group while in non-treated group the mortality was of 41.7% [42]. It was also reported that *Penaeus chinensis* postlarvae specimens exposed to *Arthrobacter* XE-7 at dose of 106 cfu ml-1 and pathogenic *Vibrios* sp. (*Vibrio parahaemolyticus*, *Vibrio anguillarum* and *Vibrio nereis*) showed a significant higher survival ratio than specimens exposed to pathogenic *Vibrios* spp.

Use of Probiotic Bacteria against Bacterial and Viral Infections in Shellfish and Fish Aquaculture

http://dx.doi.org/10.5772/57198

245

Marron (*Cherax tenuimanus*) specimens fed five probiotics (*Bacillus* sp. AQ2, *Bacillus mycoides* A10, *Shewanella* sp. A12, *Bacillus subtilis* PM3 and *Bacillus* sp. PM4) separately showed no significant differences in survival rate. However, the total haemocyte count was significantly higher in all probiotic-treated groups compared with the control group after injection with

Overall, studies have shown that probiotics are good alternative to protect shellfish against pathogenic bacteria, namely against *Vibrio* sp. pathogens, the most important in the culture of shellfish. However, further studies are necessary to broad the probiotic candidates and the shellfish species prior they are applied to aquaculture from a practical point of view. Moreover, the mechanisms behind this protection are generally ignored and deserve deeper evaluation.

Viral diseases are major problems in fish farming since there is a lack of suitable antiviral agents and a very limited number of effective vaccines. Moreover, there are few studies about the effects of probiotics against viral infections in fish. Olive flounder (*Paralychthys olivaceus*) and grouper (*Epinephelus coioides*) are the two main species which have been studied. Olive flounder

were infected with lymphocystis disease virus (LCDV) [45]. Lowest mortality rate was seen in groups fed Lactobacil (30%) or Lactobacil and Sporolac (25%) supplemented diets followed by groups receiving Sporolac alone (45%) compared to those groups fed without probiotics that showed a mortality of 80%. Evaluating the disease resistance of grouper through probiotics against virus infection, a recent study has demonstrated that specimens fed a supplemented

control group for seven days post-infection with iridovirus [46]. In another study, grouper

showed an increase in the survival of 36.7% compared to the survival rate in control group [47]. Similar results were obtained when grouper specimens were fed *S. cerevisiae* supplemented

Specimens of treated group showed a higher survival ratio (43.3%) than specimens in the control group (16.7%) [48]. Viral pathogens diversity and impact in the actual aquaculture deserves further characterization of the potential benefits of probiotics for economically

cfu g-1 of Lactobacil and/or Sporolac (commercial acid lactic bacteria)

cfu kg-1 and challenged with an iridovirus

cfu g-1 of *B. subtilis* E20 for 28 days showed a survival rate of 50% higher than the

cfu kg-1 for four weeks) and afterwards infected with a grouper iridovirus (GIV).

alone [43].

2×108

cfu ml-1 of *Vibrio mimicus* [44].

**5. Probiotics against virus in fish**

specimens fed a diet containing *L. plantarum* at 108

important cultured fish world-wide.

specimens fed 2.4×108

diet with 108

diet (5.3×107

Black tiger shrimp (*Penaeus monodon*) has also received much attention. Thus, *P. monodon* specimens exposed to 106 cfu ml-1 of *B. subtilis* BT23 for 5 days (long-term treatment) or for 1 hour (short-term treatment), and thereafter challenged with *V. harveyi*, showed a decrease in their cumulative mortality in both groups (32% and 60%, respectively) [33]. In other research, *P. monodon* juvenile specimens fed *Bacillus* sp. S11 at 1010 cfu g-1 diet for one month and infected with *V. harveyi,* combined with ozone addition, showed a significant increase in the survival ratio (75%) compared with the control group and not fed with probiotics [34]. Also in juvenile specimens fed supplemented diet containing *Lactobacillus acidophilus* 04 at dose of 105 cfu g-1 for one month showed a higher survival ratio (80%) than the control group (13.3%) after challenged with *Vibrio alginolyticus* [35]. In postlarvae specimens, dietary administration of *Paenibacillus* sp. EF012164 and *Bacillus cereus* DQ915582 at doses of 104 and 105 cfu ml-1 caused lower mortality after infection with *Vibrio harveyi* and *Vibrio* spp. (without statistical analysis) [36]. In other work, *Penaeus monodon* postlarvae specimens fed supplemented diet with 109 cfu g-1 diet of two strains of *Synechocystis* sp. (C51 and C54) separately for twenty days showed significantly better survival after infection with *Vibrio harveyi* MCCB 111 than those fed without probiotics [37]. Also in postlarvae specimens, dietary administration of *Bacillus* sp. P11 at 109 cfu g-1 caused a high survival ratio (66%) compared with the control group (0%) after 9 days of infection with *Vibrio harveyi* and *Vibrio* spp. [38]. Dietary administration of *Artemia*-encap‐ sulated *Bacillus* sp. S11 showed an increased survival of *Penaeus monodon* when infected with *Vibrio harveyi* D331 [39]. Finally, dietary administration to *P. monodon* with 103 cfu ml-1 of *Pseudomonas* sp. PM11 and *Vibrio fluvialis* PM17 for 45 days did not alter the mortality after challenge with *Vibrio anguillarum* [40]. As it has been widely shown in shellfish and fish the use of low or suboptimal dosages of probiotics have no biological role, and in this case protective effect against pathogens.

Other shrimp species have received little attention. In the Indian white shrimp (*Penaeus indicus*) juvenile specimens fed diets supplemented with *Lactobacillus acidophilus*, *Streptococcus cremoris*, *Lactobacillus bulgaricus* 56 or *L. bulgaricus* 57 at doses of 5×106 cfu g-1 for 4 weeks and infected with *Vibrio alginolyticus* showed a higher survival rate (56% - 72%) compared with that observed in specimens of the control group (20%) [41]. Similarly, in blue shrimp (*Litopenaeus stylirostris*) specimens fed supplemented diet of 107 cfu g-1 of *Pediococcus acidilactici* for 4 weeks and infected with *Vibrio nigripulchritudo* SFn1 showed a mortality level of 25% in the probiotictreated group while in non-treated group the mortality was of 41.7% [42]. It was also reported that *Penaeus chinensis* postlarvae specimens exposed to *Arthrobacter* XE-7 at dose of 106 cfu ml-1 and pathogenic *Vibrios* sp. (*Vibrio parahaemolyticus*, *Vibrio anguillarum* and *Vibrio nereis*) showed a significant higher survival ratio than specimens exposed to pathogenic *Vibrios* spp. alone [43].

Marron (*Cherax tenuimanus*) specimens fed five probiotics (*Bacillus* sp. AQ2, *Bacillus mycoides* A10, *Shewanella* sp. A12, *Bacillus subtilis* PM3 and *Bacillus* sp. PM4) separately showed no significant differences in survival rate. However, the total haemocyte count was significantly higher in all probiotic-treated groups compared with the control group after injection with 2×108 cfu ml-1 of *Vibrio mimicus* [44].

Overall, studies have shown that probiotics are good alternative to protect shellfish against pathogenic bacteria, namely against *Vibrio* sp. pathogens, the most important in the culture of shellfish. However, further studies are necessary to broad the probiotic candidates and the shellfish species prior they are applied to aquaculture from a practical point of view. Moreover, the mechanisms behind this protection are generally ignored and deserve deeper evaluation.

#### **5. Probiotics against virus in fish**

Moreover, the administration of a mixture of *Bacillus* (*B. endophyticus* YC3-b, *B. endophyticus* C2-2 and *B. tequilensis* YC5-2) to the water at doses of 0.1×106 cfu ml-1 to juvenile specimens resulted in a high survival ratio (33%) compared with the control group (9.5%) after challenge with *V. parahaemolyticus*. However, a commercial probiotic (Alibio) at the same dose that the *Bacillus* mix had no effect in survival ratio compared with the control group in *Litopenaeus vannamei* specimens [30]. *L. vannamei* specimens fed diet supplemented with two potential probiotics (strains C2 and B6) achieved a better survival ratio (44% and 50%) than control group (21%) after infection with *Vibrio harveyi* in stages from Myosis 3 to postlarvae 1 [31]. Strikingly, other microorganisms such as yeast have been also assayed as potential probiotics. Unfortu‐ nately, *L. vannamei* specimens fed *Saccharomyces cerevisiae*, *Phaffia rhodozyma* and *Saccharomyces exiguus* showed no significant different in survival ratio after infection with *V. harveyi*

Black tiger shrimp (*Penaeus monodon*) has also received much attention. Thus, *P. monodon*

hour (short-term treatment), and thereafter challenged with *V. harveyi*, showed a decrease in their cumulative mortality in both groups (32% and 60%, respectively) [33]. In other research, *P. monodon* juvenile specimens fed *Bacillus* sp. S11 at 1010 cfu g-1 diet for one month and infected with *V. harveyi,* combined with ozone addition, showed a significant increase in the survival ratio (75%) compared with the control group and not fed with probiotics [34]. Also in juvenile specimens fed supplemented diet containing *Lactobacillus acidophilus* 04 at dose of 105

for one month showed a higher survival ratio (80%) than the control group (13.3%) after challenged with *Vibrio alginolyticus* [35]. In postlarvae specimens, dietary administration of

lower mortality after infection with *Vibrio harveyi* and *Vibrio* spp. (without statistical analysis) [36]. In other work, *Penaeus monodon* postlarvae specimens fed supplemented diet with 109 cfu g-1 diet of two strains of *Synechocystis* sp. (C51 and C54) separately for twenty days showed significantly better survival after infection with *Vibrio harveyi* MCCB 111 than those fed without probiotics [37]. Also in postlarvae specimens, dietary administration of *Bacillus* sp. P11 at 109 cfu g-1 caused a high survival ratio (66%) compared with the control group (0%) after 9 days of infection with *Vibrio harveyi* and *Vibrio* spp. [38]. Dietary administration of *Artemia*-encap‐ sulated *Bacillus* sp. S11 showed an increased survival of *Penaeus monodon* when infected with

*Pseudomonas* sp. PM11 and *Vibrio fluvialis* PM17 for 45 days did not alter the mortality after challenge with *Vibrio anguillarum* [40]. As it has been widely shown in shellfish and fish the use of low or suboptimal dosages of probiotics have no biological role, and in this case

Other shrimp species have received little attention. In the Indian white shrimp (*Penaeus indicus*) juvenile specimens fed diets supplemented with *Lactobacillus acidophilus*, *Streptococcus*

infected with *Vibrio alginolyticus* showed a higher survival rate (56% - 72%) compared with that observed in specimens of the control group (20%) [41]. Similarly, in blue shrimp (*Litopenaeus*

*Vibrio harveyi* D331 [39]. Finally, dietary administration to *P. monodon* with 103

*Paenibacillus* sp. EF012164 and *Bacillus cereus* DQ915582 at doses of 104

*cremoris*, *Lactobacillus bulgaricus* 56 or *L. bulgaricus* 57 at doses of 5×106

*stylirostris*) specimens fed supplemented diet of 107

cfu ml-1 of *B. subtilis* BT23 for 5 days (long-term treatment) or for 1

cfu g-1

cfu ml-1 caused

cfu ml-1 of

cfu g-1 for 4 weeks and

cfu g-1 of *Pediococcus acidilactici* for 4 weeks

and 105

compared with control group specimens [32].

specimens exposed to 106

244 Sustainable Aquaculture Techniques

protective effect against pathogens.

Viral diseases are major problems in fish farming since there is a lack of suitable antiviral agents and a very limited number of effective vaccines. Moreover, there are few studies about the effects of probiotics against viral infections in fish. Olive flounder (*Paralychthys olivaceus*) and grouper (*Epinephelus coioides*) are the two main species which have been studied. Olive flounder specimens fed 2.4×108 cfu g-1 of Lactobacil and/or Sporolac (commercial acid lactic bacteria) were infected with lymphocystis disease virus (LCDV) [45]. Lowest mortality rate was seen in groups fed Lactobacil (30%) or Lactobacil and Sporolac (25%) supplemented diets followed by groups receiving Sporolac alone (45%) compared to those groups fed without probiotics that showed a mortality of 80%. Evaluating the disease resistance of grouper through probiotics against virus infection, a recent study has demonstrated that specimens fed a supplemented diet with 108 cfu g-1 of *B. subtilis* E20 for 28 days showed a survival rate of 50% higher than the control group for seven days post-infection with iridovirus [46]. In another study, grouper specimens fed a diet containing *L. plantarum* at 108 cfu kg-1 and challenged with an iridovirus showed an increase in the survival of 36.7% compared to the survival rate in control group [47]. Similar results were obtained when grouper specimens were fed *S. cerevisiae* supplemented diet (5.3×107 cfu kg-1 for four weeks) and afterwards infected with a grouper iridovirus (GIV). Specimens of treated group showed a higher survival ratio (43.3%) than specimens in the control group (16.7%) [48]. Viral pathogens diversity and impact in the actual aquaculture deserves further characterization of the potential benefits of probiotics for economically important cultured fish world-wide.

#### **6. Probiotics against bacteria in fish**

By far, the effects of probiotics on fish have received most of the investigations. Among the fish studied, the rainbow trout (*Oncorhynchus mykiss*) has been the most evaluated. Many different probiotic bacteria have been tested and two of the best studied are *Bacillus subtilis* and *Lactobacillus acidophilus,* two lactic acid bacteria which showed *in vitro* inhibition against *Aeromonas hydrophila* [49]. Furthermore, *B. subtilis* avoids the development of *Pseudomonas fluorescens* while *L. acidophilus* had also antimicrobial activity against *Streptococcus iniae*. The information relative to the use of probiotics as a beneficial treatment of fish against bacterial pathogens is described below and summarized (Table 2).

**Fish tested Probiotic Pathogen Survival Cites**

*Streptococcus iniae* Dan-1 formalin inactivated

*Lactobacillus rhamnosus* ATCC

*Aeromonas hydrophila* A3-51 *Vibrio fluvialis* A3-47S *Carnocterium* sp. BA211 Unidentified coccus A1-6

*Aeromonas hydrophila* A3-51 *Vibrio fluvialis* A3-47S *Carnocterium* sp. BA211 Unidentified coccus A1-6 formalin-inactivated

*Bacillus subtilis Bacillus licheniformis*

*Carnobacterium maltaromaticum*

*Carnobacterium divergens* B33

*Lactococcus lactis* ssp. *lactis*

*Leuconostoc mesenteroides*

*Lactobacillus sakei* CLFP201

*Bacillus subtilis* AB1 as live, sonicated and formalized cells and cell-free supernatant

*Aeromonas sobria* GC2

*Aeromonas sobria* GC2

CLFP196

CLFP238

*Leuconostoc mesenteroides*

Lactobacillus plantarum

*Brochothrix thermophasta* BA211

*Brochothrix thermophasta* BA211

53103

B26

CFLP100

CLFP196

*Bacillus* sp. JB-1 *Aeromonas sobria* GC2

*Clostridium botyricum Vibrio anguillarum* Significant increase [95]

Use of Probiotic Bacteria against Bacterial and Viral Infections in Shellfish and Fish Aquaculture

*Streptococcus iniae*

*Pseudomonas fluorescens* AH2 *Vibrio anguillarum* Significant increase [72]

Yersinia ruckeri Aeromonas salmonicida

*Aeromonas salmonicida* ssp. *salmonicida* CLFP501

*Lactococcus garvieae Vibrio anguillarum Vibrio ordalii*

*Aeromonas salmonicida*

*Aeromonas bestiarum*

*Ichthyophthrius multifiliis*

*Yersinia ruckeri*

ORN2

*Aeromonas salmonicida* ssp. *salmonicida*

Significant increase [80]

http://dx.doi.org/10.5772/57198

247

Significant increase [67]

Significant increase [75]

Significan increase [63]

Significant increase [65]

[65]

Significant increase for GC2 and no difference for BA211

*Aeromonas salmonicida* Significant increase [60]

*Aeromonas salmonicida* Significant increase [62]

*Yersinia ruckeri* Significant increase [73]

*Streptoccocus iniae* Significant increase [64]

*Aeromonas* sp. Significant increase [82]

*Lactococcus garvieae* Significant increase [68]

virulent

*Oncorhynchus mykiss*



**6. Probiotics against bacteria in fish**

246 Sustainable Aquaculture Techniques

pathogens is described below and summarized (Table 2).

*Anguilla anguilla Enterococcus faecium* SF68 *Edwardsiella tarda*

*Bacillus toyoi*

*Carassius auratus Aeromonas hydrophila* A3-51

*Carassius auratus Bacillus* sp., *Lactobacillus* sp.,

*Miichthys miiuy Clostridium butyricum* CB2 as

alive and dead cells

*Debariomyces hansenii* CBS-8000339

*Xiphophorus helleri*

*Dicentrarchus labrax*

*Epinephelus coioides*

*Mycteroperca rosacea*

formalin-inactivated

*Streptococcus faecium*, and *Saccharomyces cerevisiae*

By far, the effects of probiotics on fish have received most of the investigations. Among the fish studied, the rainbow trout (*Oncorhynchus mykiss*) has been the most evaluated. Many different probiotic bacteria have been tested and two of the best studied are *Bacillus subtilis* and *Lactobacillus acidophilus,* two lactic acid bacteria which showed *in vitro* inhibition against *Aeromonas hydrophila* [49]. Furthermore, *B. subtilis* avoids the development of *Pseudomonas fluorescens* while *L. acidophilus* had also antimicrobial activity against *Streptococcus iniae*. The information relative to the use of probiotics as a beneficial treatment of fish against bacterial

**Fish tested Probiotic Pathogen Survival Cites**

*Anguilla japonica Lactobacillus pentosus* PL11 *Edwarsiella tarda* Significant increase [87]

*Clarias gariepinus Lactobacillus acidophilus Staphylococcus xylosus* Significant increase [91]

*Gadus morhua Carnobacterium divergens Vibrio anguillarum* Significant increase [57]

Labeo rohita *Bacillus subtilis Aeromonas hydrophila* No difference [96]

MTC1739

AH-315

*Lactobacillus plantarum* VSG-3 *Aeromonas hydrophila* Significant increase [97]

*Aeromonas hydrophila*

*Aeromonas hydrophila*

*Pseudomonas aeruginosa* VSG-2 Aeromonas hydrophila

gr2

*981210L1*

*Pseudomonas fluorescens* 58C

*Aeromonas hydrophila*

*Streptococcus agalactiae*

*Vagococcus fluvialis Vibrio anguillarum* Significant increase [107]

*Lactobacillus plantarum Streptococcus* sp. Significant increase [47]

*Saccharomyces cerevisiae Streptococcus* sp. Significant increase [48] *Bacillus subtilis* E20 *Streptococcus* sp. Significant increase [46]

*Aeromonas salmonicida*

Significant increase for SF68 and no difference for *B. toyoi*

No differences [89]

Significant increase [98]

No difference [50]

*Vibrio anguillarum* Significant increase [94]

*Aeromonas salmonicida* Significant increase [90]

[85]


**Fish tested Probiotic Pathogen Survival Cites**

*Roseobacter* sp. strain 27-4 *Vibrio anguillarum* Significant increase [108]

Use of Probiotic Bacteria against Bacterial and Viral Infections in Shellfish and Fish Aquaculture

*Phaeobacter* sp. *Vibrio anguillarum* Unmeasured [102]

*Lactobacillus plantarum Vibrio* sp. Significant increase [99]

*damselae* ssp. *piscicida*

*damselae* ssp. *piscicida*

DC11R2

Few works have evaluated the disease resistance of grouper (*Epinephelus coioides*) through probiotics against the pathogenic *Streptococcus* sp. Thus, dietary treatment of grouper speci‐

showed a better survival rate than the control. Moreover, the yeast *Saccharomyces cerevisiae* has

a higher survival ratio (56.6%) than the control group (20%) after infection with *Streptococcus*

*Debaryomyces hansenii* CBS 8339 for five weeks showed an increase in immunoglobulin M (IgM), catalase (CAT) and superoxide dismutase (SOD) after infection with *Aeromonas*

higher relative level of protection against *Aeromonas hydrophila*, *Pseudomonas fluorescens* and *Streptococcus iniae* compared to the control group [49]. The results were even better when fish were fed a commercial probiotic supplemented diet containing *S. cerevisae*. Similar results were

Probiotic bacteria identified as *Vibrio alginolyticus* was inoculated intramuscular or intraperi‐

minutes in a suspension of the same probiotic with 108 cfu/ml and seven days later fish were challenged with *Aeromonas salmonicida* 256/81, *Vibrio anguillarum* VIB256, *Vibrio ordalii* 17K or *Yersinia ruckeri* Ex5 [52]. So, this work indicated that application of the probiotic to salmon specimens induced a decrease in mortalities after challenge with *Aeromonas salmonicida* 256/81, and to a lesser extent with *Vibrio anguillarum* VIB256 and *Vibrio ordalii* 17K and does not reduce

to 108

Leopard grouper (*Mycteroperca rosacea*) specimens fed supplemented diet with 106

also obtained in another two experiments using as a challenge an injection of 2×107

Significant increase [104-105]

http://dx.doi.org/10.5772/57198

249

Significant increase [103]

No effect [109]

cfu kg-1 yeasts four weeks showed

cfu ml-1 followed by a bath for ten

cfu g-1 of

cfu ml-1 of

cfu g-1 of a mixture

cfu kg-1 [47] or 108 cfu g-1 of *Bacillus subtilis* E20 [46]

cfu g-1 of each bacteria alone, for two months showed a

cfu ml-1 of *Flavobacterium columnare* [51].

*Scophthalmus maximus*

sp. [48].

*Ruegeria* sp.

*Carnobacterium* sp. *Roseobacter* sp.

*Solea senegalensis Shewanella putrefaciens* Pdp11 *Photobacterium*

*Bacillus subtilis Photobacterium*

*Shewanella baltica* Pdp13 *Sparus aurata Shewanella putrefaciens* Pdp11 *Vibrio anguillarum*

**Table 2.** Overview of the effects of probiotics against bacteria in fish.

shown probiotic effects in the grouper. Feeding with 5.3×107

*hydrophila* AH-315 and there was no mortality in any group [50].

Nile tilapia (*Oreochromis niloticus*) fed supplemented diet containing 0.5×107

mens fed *Lactobacillus plantarum* at 106

of *B. subtilis* and *L. acidophilus*, or 107

*P. fluorescens* and fish immersion with 2×109

toneally in atlantic salmon (*Salmo salar*) at doses of 4×106


**Table 2.** Overview of the effects of probiotics against bacteria in fish.

**Fish tested Probiotic Pathogen Survival Cites**

*Lactobacillus plantarum* CLFP238 *Lactococcus garvieae*

*Bacillus mojavensis*

CLFP196

248 Sustainable Aquaculture Techniques

M162

*Bacillus pumilus Bacillus licheniformis*

*Salmo trutta Lactococcus lactis* ssp. *lactis* CLFP100

CLFP196

*Leuconostoc mesenteroides*

S1, S5, S9 and S10 *Flavobacterium*

*Salmo salar Vibrio alginolyticus Aeromonas salmonicida*

*Oplegnathus fasciatus*

*Oreochromis niloticus*

*Paralichthys olivaceus*

*Salvelinus fontinalis*

*Lactococcus lactis* CFLP100 *Leuconostoc mesenteroides*

*Pseudomonas* sp. M174 and

*Lactobacillus acidophilus*, *Bacillus subtilis*, *Clostridium butyricum* and *Saccharomyces cerevisiae*

*Lactobacillus acidophilus Pseudomonas*

*Enterobacter cloacae Yersinia ruckeri* Significant increase [74]

*Kocuria* SM1 *Vibrio anguillarum* Significant increase [69-71]

Significant increase [66]

Significant increase [79]

*Edwardsiella tarda* Significant increase [86]

(except for B. licheniformis)

*Aeromonas salmonicida* Significant increase [83]

Significant increase [52]

Significant increase [84]

[92]

CLFP LG1

*Flavobacterium psychrophilum*

*Enterococcus faecalis* inactivated *Aeromonas salmonicida* Significant increase [81]

*Lactobacillus sakei* BK19 *Edwarsiella tarda* No difference [88]

*Bacillus subtilis Aeromonas hydrophila,* Significant increase [49]

*fluorescens Streptococcus iniae*

*Pseudomonas fluorescens Flavobacterium columnare*

*Zooshikella* sp. JE-34 *Stretoccocus iniae* Significant increase [93]

*Vibrio anguillarum*

*Vibrio ordalii* 17K *Vibrio alginolyticus Yersinia ruckeri* Ex5 No difference [52] *Pseudomonas fluorescens* AH2 *Aeromonas salmonicida* No difference [55]

*Bacillus subtilis Streptococcus iniae* Significant increase

256/81

VIB256

*columnare*

*Oreochromis Saccharomyces cerevisiae Aeromonas hydrophila* Significant increase [51]

Few works have evaluated the disease resistance of grouper (*Epinephelus coioides*) through probiotics against the pathogenic *Streptococcus* sp. Thus, dietary treatment of grouper speci‐ mens fed *Lactobacillus plantarum* at 106 to 108 cfu kg-1 [47] or 108 cfu g-1 of *Bacillus subtilis* E20 [46] showed a better survival rate than the control. Moreover, the yeast *Saccharomyces cerevisiae* has shown probiotic effects in the grouper. Feeding with 5.3×107 cfu kg-1 yeasts four weeks showed a higher survival ratio (56.6%) than the control group (20%) after infection with *Streptococcus* sp. [48].

Leopard grouper (*Mycteroperca rosacea*) specimens fed supplemented diet with 106 cfu g-1 of *Debaryomyces hansenii* CBS 8339 for five weeks showed an increase in immunoglobulin M (IgM), catalase (CAT) and superoxide dismutase (SOD) after infection with *Aeromonas hydrophila* AH-315 and there was no mortality in any group [50].

Nile tilapia (*Oreochromis niloticus*) fed supplemented diet containing 0.5×107 cfu g-1 of a mixture of *B. subtilis* and *L. acidophilus*, or 107 cfu g-1 of each bacteria alone, for two months showed a higher relative level of protection against *Aeromonas hydrophila*, *Pseudomonas fluorescens* and *Streptococcus iniae* compared to the control group [49]. The results were even better when fish were fed a commercial probiotic supplemented diet containing *S. cerevisae*. Similar results were also obtained in another two experiments using as a challenge an injection of 2×107 cfu ml-1 of *P. fluorescens* and fish immersion with 2×109 cfu ml-1 of *Flavobacterium columnare* [51].

Probiotic bacteria identified as *Vibrio alginolyticus* was inoculated intramuscular or intraperi‐ toneally in atlantic salmon (*Salmo salar*) at doses of 4×106 cfu ml-1 followed by a bath for ten minutes in a suspension of the same probiotic with 108 cfu/ml and seven days later fish were challenged with *Aeromonas salmonicida* 256/81, *Vibrio anguillarum* VIB256, *Vibrio ordalii* 17K or *Yersinia ruckeri* Ex5 [52]. So, this work indicated that application of the probiotic to salmon specimens induced a decrease in mortalities after challenge with *Aeromonas salmonicida* 256/81, and to a lesser extent with *Vibrio anguillarum* VIB256 and *Vibrio ordalii* 17K and does not reduce mortality with *Yersinia ruckeri* Ex5. In this sense, competition *in vitro* studies will help to elucidate these *in vivo* results. In other work [53] atlantic salmon specimens were fed a supplemented diet with 5×108 cells ml-1 of the microalgae *Tetraselmis suecica* for 14 days were challenged with fish pathogens. Results showed that use of *T. suecica* as a probiotic supplement was successful in preventing mortalities caused by *Aeromonas hydrophila*, *Aeromonas salmoni‐ cida* (strains LL and NG), *Serratia liquefaciens*, *Vibrio anguillarum*, *Vibrio salmonicida* and *Yersinia ruckeri* type I. *Salmo salar* fry specimens which were fed *Lactobacillus plantarum* at dose of 2.5×109 cfu g-1 and infected with *Aeromonas salmonicida* AL2020 showed a cumulative mortality lower than infected control group [54]. *Pseudomonas fluorescens* AH2 at doses of 103 -105 cfu ml-1 in water did not confer protection against *Aeromonas salmonicida* in *Salmo salar* specimens [55]. It has been also reported *in vitro* that the pathogen *Vibrio anguillarum* LFI1243 showed a complete inhibition of growth in presence of *Carnobacterium divergens* strains [56]. This is in accordance with another study showing that *Carnobacterium* sp. isolated from salmon inhibited the growth of both *Vibrio anguillarum* and *Aeromonas salmonicida* in intestinal fish mucus [57]. Interestingly, *Carnobacterium divergens* isolated from *Salmo salar* specimens were also tested as fed probiotics in atlantic cod (*Gadus morhua*) specimens which showed lower mortalities.

0%-20% whereas in specimens fed probiotic-diets survival rate was 100% in all treatments (with JB-1 and GC2) with all pathogens bacteria except for *Vibrio anguillarum* (87% and 94% respectively) and *Yersinia ruckeri* (94% in GC2 diet). In other study it has been found that dietary administration of *Aeromonas sobria* GC2 at dose of 108 cfu g-1 and *Brochothrix thermosphasta* BA211 at dose of 1010 cfu g-1 for two weeks showed a higher survival rate (76% and 88%) than in control group (22%) after intramuscular injection with *Aeromonas bestiarum* ORN2 [65]. In the same experiment, it was demonstrated that GC2 probiotic exerts resistance also against ichthyophthiriasis (caused by the parasite *Ichthyophthirius multifiliis*) however BA211 strain had no effect against this pathogen. An *in vitro* assay tested the inhibitory ability of *Lactobacillus plantarum* strains, *Lactococcus lactis* strains and *Leuconostoc mesenteroides* strains against *Lactococcus garvieae* CLFP LG1 [66]. Other research [67] reported that rainbow trout specimens

Use of Probiotic Bacteria against Bacterial and Viral Infections in Shellfish and Fish Aquaculture

obtained a reduced mortality (18.9% and 46.3%, respectively) compared with the control group (52.6%) when were infected with *Aeromonas salmonicida* ssp. *salmonicida.* An *in vivo* assay against lactococcosis, dietary administration with lactic acid bacteria (*Leuconostoc mesenter‐*

showed a decrease in cumulative mortality (46% and 54%) compared with the control group (78%) in trout specimens after injection with *Lactococcus garvieae* [68]. Following with the development of protection in rainbow trout, specimens were fed a supplemented diet with

 cfu g-1 of *Kokuria* SM1 for four weeks and after replacement for control diet they were infected with *Vibrio anguillarum* every week [69]. Interestingly, this relative protection was maximum (87%) just after the end of the probiotic-supplemented diet that was disappearing with the time and was of 71%, 68%, 62% and 36% after two, three, four and five weeks after cessation of probiotic, respectively, representing a sign of gradual loss of effect [70, 71]. In other

or added *in situ* when challenged with *Vibrio anguillarum* showed a higher survival ratio (56% and 65%, respectively) than specimens exposed to *Vibrio anguillarum* without probiotic (50%) [72]. Dietary administration of BioPlus2B, wich contains two probiotic bacteria (*Bacillus subtilis* and *Bacillus licheniformis*) for four weeks resulted in a better survival ratio (41.7%) compared with Ergosan-diet (8.9%) and control diet (9%) in trout specimens after intraperi‐ toneal injection of *Yersinia ruckeri* [73]. Following with the protection against yersiniosis,

two months achieved a high survival ratio (99.2%) compared with the control group (35%) when infected with *Yersinia ruckeri* [74]. In addition, in other research, dietary administration

 cfu g-1 of *Carnobacterium maltaromaticum* B26 and *Carnobacterium divergens* B33 separately for two weeks conferred protection against *Yersinia ruckeri* with a high survival ratio of 73% and 80% respectively, compared with the control group (13%); and the same probiotics (B26 and B33) also provided protection against *Aeromonas salmonicida* with a survival ratio of 80% in both cases compared with the control group (20%) [75]. *Flavobacterium psychrophilum* is the causative agent of coldwater disease (CWD), also known as rainbow trout fry syndrome (RTFS). Although many types of salmonids are susceptible to RTFS, rainbow trout can be especially impacted due to direct mortality or deformities in surviving specimens leading to economic losses in aquaculture [76, 77]. In order to establish strategies of resistance against

cfu g-1 of *Enterobacter cloacae* and *Bacillus mojavensis* separately for

and 1012 cfu g-1 for fifty-one days

cfu g-1 for four weeks

http://dx.doi.org/10.5772/57198

251

cfu ml-1 for 5 days

fed *Lactobacillus rhamnosus* ATCC 53103 at doses of 109

108

of 107

dietary administration of 108

*oides* CLFP 196, and *Lactobacillus plantarum* CLFP 238) at doses of 106

research, *O. mykiss* specimens exposed to *Pseudomonas fluorescens* AH2 at 105

The most studied fish specie regarding the potential benefits of probiotics is the rainbow trout (*Oncorhynchus mykiss*). *In vitro* studies have demonstrated the competitive adhesion and production of antagonistic compounds by some lactic acid bacteria (*Lactococcus lactis* ssp. *lactis* CLFP100, *Lactococcus lactis* ssp. *cremoris* CLFP102 and *Lactobacillus curvatus* CLFP150) against fish pathogens, including *Aeromonas salmonicida* ssp. *salmonicida* CLFP 501, *Carnobacterium piscicola* CLFP 601, *Lactococcus garvieae* CLFP LG1, *Vagococcus salmoninarum* CLFP 602, *Yersinia ruckeri* ATCC 29473 and *Vibrio anguillarum* La192 [58]. In another *in vitro* assay authors checked the inhibitory effect of *Carnobacterium* sp. and *Pseudomonas* sp. isolated from gut of rainbow trout against *Vibrio anguillarum*, although there was no correlation with the *in vivo* study since the same probiotic failed to protect them against *Vibrio anguillarum* infection [59]. In rainbow trout specimens fed 107 cfu g-1 of four putative probiotics (*Aeromonas hydrophila*, *Vibrio fluvialis*, *Carnobacterium* sp. and an unidentified coccus) showed a better survival after intra‐ peritoneal injection of *Aeromonas salmonicida* [60]. However, the same dietary doses of *Carnobacterium inhibens* and *Vibrio alginolyticus* conferred a lower protection against *Aeromonas salmonicida*. These results were correlated with other two studies [52, 61]. In rainbow trout fingerlings, the same four putative probiotics seen previously [60] but administered as formaline-inactivated bacteria showed a lower mortality (4%, 4%, 8% and 0%, respectively) after challenge with *Aeromonas salmonicida* [62] suggesting that the use of dead probiotics has also many benefits for fish. Dietary administration of lactic acid bacteria (*Lactococcus lactis* ssp. *lactis* CLFP 100, *Leuconostoc mesenteroides* CLFP 196, and *Lactobacillus sakei* CLFP 202) at doses of 106 cfu g-1 for 2 weeks showed a survival rate of 97.8%-100% (versus 65.6% in the control group) when trout specimens were challenged with *Aeromonas salmonicida* ssp. *salmonicida* CLFP 501 [63]. It has been reported that dietary supplementation with *Bacillus* sp. JB-1 and *Aeromonas sobria* GC2 at doses of 2×108 and 107 cfu g-1, respectively for two weeks led to a higher survival rates in trout after challenge with *Streptococcus iniae* and *Lactococcus garvieae* at doses of 2×107 cfu ml-1, and *Vibrio anguillarum*, *Vibrio ordalii*, *Aeromonas salmonicida* and *Yersinia ruckeri* at doses of 3×108 cfu ml-1 [64]. Thus, survival rates in specimens fed control diets were

0%-20% whereas in specimens fed probiotic-diets survival rate was 100% in all treatments (with JB-1 and GC2) with all pathogens bacteria except for *Vibrio anguillarum* (87% and 94% respectively) and *Yersinia ruckeri* (94% in GC2 diet). In other study it has been found that dietary administration of *Aeromonas sobria* GC2 at dose of 108 cfu g-1 and *Brochothrix thermosphasta* BA211 at dose of 1010 cfu g-1 for two weeks showed a higher survival rate (76% and 88%) than in control group (22%) after intramuscular injection with *Aeromonas bestiarum* ORN2 [65]. In the same experiment, it was demonstrated that GC2 probiotic exerts resistance also against ichthyophthiriasis (caused by the parasite *Ichthyophthirius multifiliis*) however BA211 strain had no effect against this pathogen. An *in vitro* assay tested the inhibitory ability of *Lactobacillus plantarum* strains, *Lactococcus lactis* strains and *Leuconostoc mesenteroides* strains against *Lactococcus garvieae* CLFP LG1 [66]. Other research [67] reported that rainbow trout specimens fed *Lactobacillus rhamnosus* ATCC 53103 at doses of 109 and 1012 cfu g-1 for fifty-one days obtained a reduced mortality (18.9% and 46.3%, respectively) compared with the control group (52.6%) when were infected with *Aeromonas salmonicida* ssp. *salmonicida.* An *in vivo* assay against lactococcosis, dietary administration with lactic acid bacteria (*Leuconostoc mesenter‐ oides* CLFP 196, and *Lactobacillus plantarum* CLFP 238) at doses of 106 cfu g-1 for four weeks showed a decrease in cumulative mortality (46% and 54%) compared with the control group (78%) in trout specimens after injection with *Lactococcus garvieae* [68]. Following with the development of protection in rainbow trout, specimens were fed a supplemented diet with 108 cfu g-1 of *Kokuria* SM1 for four weeks and after replacement for control diet they were infected with *Vibrio anguillarum* every week [69]. Interestingly, this relative protection was maximum (87%) just after the end of the probiotic-supplemented diet that was disappearing with the time and was of 71%, 68%, 62% and 36% after two, three, four and five weeks after cessation of probiotic, respectively, representing a sign of gradual loss of effect [70, 71]. In other research, *O. mykiss* specimens exposed to *Pseudomonas fluorescens* AH2 at 105 cfu ml-1 for 5 days or added *in situ* when challenged with *Vibrio anguillarum* showed a higher survival ratio (56% and 65%, respectively) than specimens exposed to *Vibrio anguillarum* without probiotic (50%) [72]. Dietary administration of BioPlus2B, wich contains two probiotic bacteria (*Bacillus subtilis* and *Bacillus licheniformis*) for four weeks resulted in a better survival ratio (41.7%) compared with Ergosan-diet (8.9%) and control diet (9%) in trout specimens after intraperi‐ toneal injection of *Yersinia ruckeri* [73]. Following with the protection against yersiniosis, dietary administration of 108 cfu g-1 of *Enterobacter cloacae* and *Bacillus mojavensis* separately for two months achieved a high survival ratio (99.2%) compared with the control group (35%) when infected with *Yersinia ruckeri* [74]. In addition, in other research, dietary administration of 107 cfu g-1 of *Carnobacterium maltaromaticum* B26 and *Carnobacterium divergens* B33 separately for two weeks conferred protection against *Yersinia ruckeri* with a high survival ratio of 73% and 80% respectively, compared with the control group (13%); and the same probiotics (B26 and B33) also provided protection against *Aeromonas salmonicida* with a survival ratio of 80% in both cases compared with the control group (20%) [75]. *Flavobacterium psychrophilum* is the causative agent of coldwater disease (CWD), also known as rainbow trout fry syndrome (RTFS). Although many types of salmonids are susceptible to RTFS, rainbow trout can be especially impacted due to direct mortality or deformities in surviving specimens leading to economic losses in aquaculture [76, 77]. In order to establish strategies of resistance against

mortality with *Yersinia ruckeri* Ex5. In this sense, competition *in vitro* studies will help to elucidate these *in vivo* results. In other work [53] atlantic salmon specimens were fed a

challenged with fish pathogens. Results showed that use of *T. suecica* as a probiotic supplement was successful in preventing mortalities caused by *Aeromonas hydrophila*, *Aeromonas salmoni‐ cida* (strains LL and NG), *Serratia liquefaciens*, *Vibrio anguillarum*, *Vibrio salmonicida* and *Yersinia ruckeri* type I. *Salmo salar* fry specimens which were fed *Lactobacillus plantarum* at dose of

ml-1 in water did not confer protection against *Aeromonas salmonicida* in *Salmo salar* specimens [55]. It has been also reported *in vitro* that the pathogen *Vibrio anguillarum* LFI1243 showed a complete inhibition of growth in presence of *Carnobacterium divergens* strains [56]. This is in accordance with another study showing that *Carnobacterium* sp. isolated from salmon inhibited the growth of both *Vibrio anguillarum* and *Aeromonas salmonicida* in intestinal fish mucus [57]. Interestingly, *Carnobacterium divergens* isolated from *Salmo salar* specimens were also tested as fed probiotics in atlantic cod (*Gadus morhua*) specimens which showed lower mortalities.

The most studied fish specie regarding the potential benefits of probiotics is the rainbow trout (*Oncorhynchus mykiss*). *In vitro* studies have demonstrated the competitive adhesion and production of antagonistic compounds by some lactic acid bacteria (*Lactococcus lactis* ssp. *lactis* CLFP100, *Lactococcus lactis* ssp. *cremoris* CLFP102 and *Lactobacillus curvatus* CLFP150) against fish pathogens, including *Aeromonas salmonicida* ssp. *salmonicida* CLFP 501, *Carnobacterium piscicola* CLFP 601, *Lactococcus garvieae* CLFP LG1, *Vagococcus salmoninarum* CLFP 602, *Yersinia ruckeri* ATCC 29473 and *Vibrio anguillarum* La192 [58]. In another *in vitro* assay authors checked the inhibitory effect of *Carnobacterium* sp. and *Pseudomonas* sp. isolated from gut of rainbow trout against *Vibrio anguillarum*, although there was no correlation with the *in vivo* study since the same probiotic failed to protect them against *Vibrio anguillarum* infection [59]. In rainbow

*fluvialis*, *Carnobacterium* sp. and an unidentified coccus) showed a better survival after intra‐ peritoneal injection of *Aeromonas salmonicida* [60]. However, the same dietary doses of *Carnobacterium inhibens* and *Vibrio alginolyticus* conferred a lower protection against *Aeromonas salmonicida*. These results were correlated with other two studies [52, 61]. In rainbow trout fingerlings, the same four putative probiotics seen previously [60] but administered as formaline-inactivated bacteria showed a lower mortality (4%, 4%, 8% and 0%, respectively) after challenge with *Aeromonas salmonicida* [62] suggesting that the use of dead probiotics has also many benefits for fish. Dietary administration of lactic acid bacteria (*Lactococcus lactis* ssp. *lactis* CLFP 100, *Leuconostoc mesenteroides* CLFP 196, and *Lactobacillus sakei* CLFP 202) at doses

 cfu g-1 for 2 weeks showed a survival rate of 97.8%-100% (versus 65.6% in the control group) when trout specimens were challenged with *Aeromonas salmonicida* ssp. *salmonicida* CLFP 501 [63]. It has been reported that dietary supplementation with *Bacillus* sp. JB-1 and

cfu ml-1, and *Vibrio anguillarum*, *Vibrio ordalii*, *Aeromonas salmonicida* and *Yersinia*

cfu ml-1 [64]. Thus, survival rates in specimens fed control diets were

survival rates in trout after challenge with *Streptococcus iniae* and *Lactococcus garvieae* at doses

and 107

lower than infected control group [54]. *Pseudomonas fluorescens* AH2 at doses of 103

cfu g-1 and infected with *Aeromonas salmonicida* AL2020 showed a cumulative mortality

cells ml-1 of the microalgae *Tetraselmis suecica* for 14 days were

cfu g-1 of four putative probiotics (*Aeromonas hydrophila*, *Vibrio*

cfu g-1, respectively for two weeks led to a higher


supplemented diet with 5×108

250 Sustainable Aquaculture Techniques

trout specimens fed 107

*Aeromonas sobria* GC2 at doses of 2×108

of 106

of 2×107

*ruckeri* at doses of 3×108

2.5×109

CWD with probiotics, in two studies [78, 79] it was demonstrated the ability of *Pseudomonas* sp. M174 and M162 to inhibit *Flavobacterium psychrophilum in vitro*. In addition, others *in vivo* experiments, rainbow trout specimens fed supplemented diet with *Pseudomonas* sp. M174 (at 4×106 ) and M162 (at doses of 5×107 -2×109 cfu g-1) showed a decrease in cumulative mortality after infection with *Flavobacterium psychrophilum* JIP02/86. Thus, cumulative mortality was 41% in the M174-diet group, 35% in the M162-diet group, and 57% in control groups. In an interesting study, oral vaccines with formalin-killed *Streptococcus iniae* Dan-1 at doses of 3×1011 cfu ml-1 were inoculated in *Oncorhynchus mykiss* specimens provided them protection against *Streptococcus iniae* virulent at doses of 105 cfu ml-1 until six months later. The survival ratio was 90% in the treated group and 20% in the control group [80]. As seen in the vast literature the benefits of many probiotics in the culture of rainbow trout is achieved. Further‐ more, some papers also demonstrate that probiotics do not need to be alive exclusively. Thus, trout specimens fed supplemented diet with inactivated *Enterococcus faecalis* at dose of 5g kg-1 feed showed lower cumulative mortality (40%) than the control group (83%) after challenge with *Aeromonas salmonicida* [81]. Other probiotic forms of *Bacillus subtilis* AB1 such as live cells, sonicated cells, formaline-dead cells and cell-free supernatant were applied as supplement in diets to rainbow trout specimens which achieved a survival of 100% in all forms of probiotic-treatments whereas the survival in control groups was 10-15% after intraperito‐ neal injection with a pathogenic *Aeromonas* sp. [82].

*fasciatus*) it has been also shown that dietary supplementation with 2.2×107

the cumulative mortality [88].

ed with 3×107

3.5×106

[93].

108

107

106 , 108

or 1.5×107

(medium dose) and 3.4×108

injected with 2×106

*cillus sakei* BK19 and challenged with *Edwardsiella tarda* produced a non-significant decrease in

Dietary supplementation of different species of *Bacillus* sp., *Lactobacillus* sp., *Streptococcus faecium* and *Saccharomyces cerevisae* had no effect in survival ratio of ornamental fishes (*Carassius auratus* and *Xiphophorus helleri*) specimens after challenge with *Pseudomonas fluores‐ cens* 58C [89]. However, other study with *Carassius auratus* fed a supplemented diet of formalininactivated *Aeromonas hydrophila* A3-51 for twenty days showed a decrease in cumulative mortality compared with the control group after infection with *Aeromonas salmonicida* [90].

African catfish (*Clarias gariepinus*) juvenile specimens were fed a commercial diet supplement‐

*agalactiae* separately [91]. At one week post infection, the fish survival rate in control group and in infected groups treated with probiotic diet was 100%, whilst in the groups infected with *Staphylococcus xylosus*, *Aeromonas hydrophila* gr2 and *Streptococcus agalactiae* fed the non-

Olive flounder (*Paralichthys olivaceus*) specimens fed supplemented diet with *Bacillus subtilis*, *Bacillus pumilus* and *Bacillus licheniformis*, separately and at doses 1010 cfu g-1 for eight weeks showed a higher survival ratio in the case of *Bacillus subtilis* and *Bacillus pumilus* (97.3% and 98.7%, respectively) than specimens in the control group (77.3%) after immersion with *Streptoccocus iniae* [92]. For *Bacillus licheniformis* diet, specimens did not show statistically significant differences in survival ratio (86.7%) compared with the control group (77.3%). In

with *Streptococcus iniae* showed their mortality reduced from 85 to htose of the controls 25-40%

Chinese drum (*Miichthys miiuy*) specimens were also fed commercial diet supplemented with

Tropical freshwater fish (*Labeo rohita*) specimens were fed a supplemented diet with 0.5×107

injection of *Aeromonas hydrophila* O:18, specimens showed increased serum bactericidal activity and granulocyte numbers in probiotic-fed groups compared with the control group [96]. In other work [97] it has been reported that *L. rohita* specimens fed dietary supplementation with

 or 1010 cfu g-1 of *Lactobacillus plantarum* VSG3 for two months showed a higher survival rate (37%, 77% and 63%, respectively) than the control group (14%) after injection of *Aeromonas*

cfu g-1 of *Bacillus subtilis* for two weeks. After challenge by intraperitoneal

or 109

cfu g-1 of *Pseudomonas aerugino‐*

 cfu g-1 of *Clostridium botyricum* CB2 in the form of alive cells (CB) or dead cells (D-CB) for 30 days and then challenged with *Vibrio anguillarum* and *Aeromonas hydrophila*, separately. Result showed that survival in chinese drum specimens increased in both groups of probiotic diet compared with the control for both pathogen bacteria [94]. These results are according to other study [95] which demonstrated that dietary administration of *Clostridium botyricum* in

probiotic diet, fish survival recorded was 83.3%, 76.6% and 80.0% respectively.

another study, *Paralichthys olivaceus* specimens were fed a diet containing 3.4×104

rainbow trout (*Oncorhynchus mykiss*) achieved resistance against vibriosis.

*hydrophila*. In addition, dietary supplementation of 107

cfu g-1 of *Lactobacillus acidophilus* for 12 weeks. Then, fish were intraperitoneally

cfu ml-1 of *Staphylococcus xylosus*, *Aeromonas hydrophila* gr2 and *Streptococcus*

Use of Probiotic Bacteria against Bacterial and Viral Infections in Shellfish and Fish Aquaculture

cfu ml-1 (high dose) of *Zooshikella* sp. JE-34 and challenged

cfu g-1 of *Lactoba‐*

253

http://dx.doi.org/10.5772/57198

(low dose),

,

Other trout species have been slightly evaluated. Thus, brown trout (*Salmo trutta*) specimens fed diets containing lactic acid bacteria (*Lactococcus lactis* ssp. *lactis* CLFP 100 or *Leuconostoc mesenteroides* CLFP 196) at doses of 106 cfu g-1 for four weeks separately, reduced the cumulative mortality after challenge with *Aeromonas salmonicida* from 37% in the control group to 15% and 9%, respectively. [83]. In the case of brook trout (*Salvelinus fontinalis*), specimens exposed to four potential probiotics (S1, S5, S9 and S10) separately at doses of 105 cfu ml-1 and one pathogen (*Flavobacterium columnare*) showed a higher survival ratio than specimens exposed to *Flavo‐ bacterium columnare* (without probiotics) being S9 the most successful with a cumulative mortality of only 4% [84].

Edwardsiellosis, a bacterial septicaemia caused by the Gram-negative bacterium *Edwardsiella tarda*, is one of the most serious bacterial diseases in cultured eels [85]. So, in a study with European eel (*Anguilla anguilla*), dietary administration with *Enterococcus faecium* SF68 from Cernivet® and *Bacillus toyoi* from Toyocerin® for 2 weeks was followed by challenge with *Edwardsiella tarda* 981210L1. *Bacillus toyoi* did not protected against Edwardsiellosis whilst *Enterococcus faecium* SF68 showed higher rate of survival (73%) compared with the control (45%). In the resistance of Nile tilapia (*Oreochromis niloticus*) against edwardsiellosis, dietary administration of a commercial mix of probiotics that contained *Lactobacillus acidophilus* (1.2×108 cfu g-1), *Bacillus subtilis* (1.6×107 cfu g-1), *Clostridium butyricum* (2×107 cfu g-1) and *Saccharomyces cerevisiae* (1.6×107 cfu g-1) for 30 days following infection with *Edwardiella tarda*, provided a cumulative mortality lower than positive control group [86]. Recently, it has been also reported [87] that dietary supplementation of 108 cfu g-1 of *Lactobacillus pentosus* PL11 in Japanese eel (*Anguilla japonica*) challenged with *Edwardsella tarda* showed an increase in growth performance compared with the control group. In the case of rock bream (*Oplegnathus* *fasciatus*) it has been also shown that dietary supplementation with 2.2×107 cfu g-1 of *Lactoba‐ cillus sakei* BK19 and challenged with *Edwardsiella tarda* produced a non-significant decrease in the cumulative mortality [88].

CWD with probiotics, in two studies [78, 79] it was demonstrated the ability of *Pseudomonas* sp. M174 and M162 to inhibit *Flavobacterium psychrophilum in vitro*. In addition, others *in vivo* experiments, rainbow trout specimens fed supplemented diet with *Pseudomonas* sp. M174 (at

after infection with *Flavobacterium psychrophilum* JIP02/86. Thus, cumulative mortality was 41% in the M174-diet group, 35% in the M162-diet group, and 57% in control groups. In an interesting study, oral vaccines with formalin-killed *Streptococcus iniae* Dan-1 at doses of 3×1011 cfu ml-1 were inoculated in *Oncorhynchus mykiss* specimens provided them protection

ratio was 90% in the treated group and 20% in the control group [80]. As seen in the vast literature the benefits of many probiotics in the culture of rainbow trout is achieved. Further‐ more, some papers also demonstrate that probiotics do not need to be alive exclusively. Thus, trout specimens fed supplemented diet with inactivated *Enterococcus faecalis* at dose of 5g kg-1 feed showed lower cumulative mortality (40%) than the control group (83%) after challenge with *Aeromonas salmonicida* [81]. Other probiotic forms of *Bacillus subtilis* AB1 such as live cells, sonicated cells, formaline-dead cells and cell-free supernatant were applied as supplement in diets to rainbow trout specimens which achieved a survival of 100% in all forms of probiotic-treatments whereas the survival in control groups was 10-15% after intraperito‐

Other trout species have been slightly evaluated. Thus, brown trout (*Salmo trutta*) specimens fed diets containing lactic acid bacteria (*Lactococcus lactis* ssp. *lactis* CLFP 100 or *Leuconostoc*

mortality after challenge with *Aeromonas salmonicida* from 37% in the control group to 15% and 9%, respectively. [83]. In the case of brook trout (*Salvelinus fontinalis*), specimens exposed to

(*Flavobacterium columnare*) showed a higher survival ratio than specimens exposed to *Flavo‐ bacterium columnare* (without probiotics) being S9 the most successful with a cumulative

Edwardsiellosis, a bacterial septicaemia caused by the Gram-negative bacterium *Edwardsiella tarda*, is one of the most serious bacterial diseases in cultured eels [85]. So, in a study with European eel (*Anguilla anguilla*), dietary administration with *Enterococcus faecium* SF68 from Cernivet® and *Bacillus toyoi* from Toyocerin® for 2 weeks was followed by challenge with *Edwardsiella tarda* 981210L1. *Bacillus toyoi* did not protected against Edwardsiellosis whilst *Enterococcus faecium* SF68 showed higher rate of survival (73%) compared with the control (45%). In the resistance of Nile tilapia (*Oreochromis niloticus*) against edwardsiellosis, dietary administration of a commercial mix of probiotics that contained *Lactobacillus acidophilus*

provided a cumulative mortality lower than positive control group [86]. Recently, it has been

Japanese eel (*Anguilla japonica*) challenged with *Edwardsella tarda* showed an increase in growth performance compared with the control group. In the case of rock bream (*Oplegnathus*

cfu g-1) showed a decrease in cumulative mortality

cfu g-1 for four weeks separately, reduced the cumulative

cfu g-1), *Clostridium butyricum* (2×107

cfu g-1) for 30 days following infection with *Edwardiella tarda*,

cfu g-1 of *Lactobacillus pentosus* PL11 in

cfu ml-1 and one pathogen

cfu g-1) and

cfu ml-1 until six months later. The survival


4×106

) and M162 (at doses of 5×107

252 Sustainable Aquaculture Techniques

against *Streptococcus iniae* virulent at doses of 105

neal injection with a pathogenic *Aeromonas* sp. [82].

cfu g-1), *Bacillus subtilis* (1.6×107

also reported [87] that dietary supplementation of 108

*Saccharomyces cerevisiae* (1.6×107

four potential probiotics (S1, S5, S9 and S10) separately at doses of 105

*mesenteroides* CLFP 196) at doses of 106

mortality of only 4% [84].

(1.2×108

Dietary supplementation of different species of *Bacillus* sp., *Lactobacillus* sp., *Streptococcus faecium* and *Saccharomyces cerevisae* had no effect in survival ratio of ornamental fishes (*Carassius auratus* and *Xiphophorus helleri*) specimens after challenge with *Pseudomonas fluores‐ cens* 58C [89]. However, other study with *Carassius auratus* fed a supplemented diet of formalininactivated *Aeromonas hydrophila* A3-51 for twenty days showed a decrease in cumulative mortality compared with the control group after infection with *Aeromonas salmonicida* [90].

African catfish (*Clarias gariepinus*) juvenile specimens were fed a commercial diet supplement‐ ed with 3×107 cfu g-1 of *Lactobacillus acidophilus* for 12 weeks. Then, fish were intraperitoneally injected with 2×106 cfu ml-1 of *Staphylococcus xylosus*, *Aeromonas hydrophila* gr2 and *Streptococcus agalactiae* separately [91]. At one week post infection, the fish survival rate in control group and in infected groups treated with probiotic diet was 100%, whilst in the groups infected with *Staphylococcus xylosus*, *Aeromonas hydrophila* gr2 and *Streptococcus agalactiae* fed the nonprobiotic diet, fish survival recorded was 83.3%, 76.6% and 80.0% respectively.

Olive flounder (*Paralichthys olivaceus*) specimens fed supplemented diet with *Bacillus subtilis*, *Bacillus pumilus* and *Bacillus licheniformis*, separately and at doses 1010 cfu g-1 for eight weeks showed a higher survival ratio in the case of *Bacillus subtilis* and *Bacillus pumilus* (97.3% and 98.7%, respectively) than specimens in the control group (77.3%) after immersion with *Streptoccocus iniae* [92]. For *Bacillus licheniformis* diet, specimens did not show statistically significant differences in survival ratio (86.7%) compared with the control group (77.3%). In another study, *Paralichthys olivaceus* specimens were fed a diet containing 3.4×104 (low dose), 3.5×106 (medium dose) and 3.4×108 cfu ml-1 (high dose) of *Zooshikella* sp. JE-34 and challenged with *Streptococcus iniae* showed their mortality reduced from 85 to htose of the controls 25-40% [93].

Chinese drum (*Miichthys miiuy*) specimens were also fed commercial diet supplemented with 108 cfu g-1 of *Clostridium botyricum* CB2 in the form of alive cells (CB) or dead cells (D-CB) for 30 days and then challenged with *Vibrio anguillarum* and *Aeromonas hydrophila*, separately. Result showed that survival in chinese drum specimens increased in both groups of probiotic diet compared with the control for both pathogen bacteria [94]. These results are according to other study [95] which demonstrated that dietary administration of *Clostridium botyricum* in rainbow trout (*Oncorhynchus mykiss*) achieved resistance against vibriosis.

Tropical freshwater fish (*Labeo rohita*) specimens were fed a supplemented diet with 0.5×107 , 107 or 1.5×107 cfu g-1 of *Bacillus subtilis* for two weeks. After challenge by intraperitoneal injection of *Aeromonas hydrophila* O:18, specimens showed increased serum bactericidal activity and granulocyte numbers in probiotic-fed groups compared with the control group [96]. In other work [97] it has been reported that *L. rohita* specimens fed dietary supplementation with 106 , 108 or 1010 cfu g-1 of *Lactobacillus plantarum* VSG3 for two months showed a higher survival rate (37%, 77% and 63%, respectively) than the control group (14%) after injection of *Aeromonas hydrophila*. In addition, dietary supplementation of 107 or 109 cfu g-1 of *Pseudomonas aerugino‐*

*sa* VSG-2 for two months showed a higher survival rate (66% and 55%, respectively) than in the control group (11%) after injection with *Aeromonas hydrophila* MTCC1739. So, the appro‐ priate administration dose was 107 cfu g-1 of *Pseudomonas aeruginosa* VSG-2 and 108 cfu g-1 of *Lactobacillus plantarum* VSG-3 which achieved the better survival rate (66% and 77%, respec‐ tively) after challenge with *Aeromonas hydrophila* MTCC1739 [97, 98], demonstrating that probiotics are only effective when administered in adequate doses.

**•** Dietary administration of probiotics is the preferred for the researchers and farmers. However, bioencapsulation through *Artemia* might be considered a good solution, mainly

Use of Probiotic Bacteria against Bacterial and Viral Infections in Shellfish and Fish Aquaculture

http://dx.doi.org/10.5772/57198

255

**•** Most of the studies have used live bacteria but other forms such as inactivated, killed, homogenized or even supernatants have also presented good probiotic properties.

**•** Bacteria are the most known probiotics but other microorganisms such as yeast or micro‐

**•** Although probiotics have probed protection against pathogenic bacteria further evaluation

**•** The concentration of the administered probiotic is essential and needs to be optimized for

**•** The time of administration is also a very important factor and periods of 2 to 4 weeks of

**•** Only a few potential probiotics tested *in vitro* become in effective probiotics *in vivo* and in

Further studies are still necessary to increase our knowledge about the use of probiotics to control bacterial infections in shellfish and fish but much more efforts are needed in the case of viral diseases. This is an important issue for the aquaculture industry that is continuously growing due to the fish and shellfish demand for human consume. Apart from the discovery of new or better probiotic formulations, improvement of their benefits may be helpful. Thus, better and cheaper production methods, administration ways or combination with other

H. Cordero wishes to thank the *Ministerio de Economía y Competitividad* (MINECO) for a *F.P.I.* fellowship. This work has been funded by grants AGL2010-20801-C02-02 (MINECO and FEDER), AGL2011-30381-C03-01 (MINECO) and 04538/GERM/06 (*Fundación Séneca, Grupo de*

Fish Innate Immune System Group, Department of Cell Biology and Histology, Faculty of Biology, Regional Campus of International Excellence "Campus Mare Nostrum". University

at larval stages.

every situation.

commercial probiotics.

**Acknowledgements**

**Author details**

of Murcia, Murcia, Spain

*Excelencia de la Región de Murcia*).

algae are also suitable and good candidates.

dietary administration seem to be the optimal.

preventive/therapeutic measures are welcomed.

Héctor Cordero, María Ángeles Esteban and Alberto Cuesta

of their potential against virus and parasites is deserved.

Turbot (*Scophthalmus maximus*) larvae specimens fed rotifers enriched with *Lactobacillus plantarum* and *Carnobacterium* sp. at doses of 107 -2×107 cfu ml-1 showed a higher survival ratio (53%) than specimens fed rotifers without probiotics (8%) [99]. Similarly, larvae specimens exposed to *Roseobacter* sp. strain 27-4 at dose of 107 cfu ml-1 showed a significant decrease in cumulative mortality compared with control larvae specimens. In addition, this *Roseobacter* sp. strain 27-4 was previously tested as antagonist to *Vibrio anguillarum* [100]. When specimens were fed rotifers enriched with *Roseobacter* sp. strain 27-4 and infected with *Vibrio anguilla‐ rum*, achieved a decrease in cumulative mortality compared with specimens only infected [101]. It was demonstrated in an *in vitro* assay that *Phaeobacter* sp. and *Ruegeria* sp. are also potential probiotics against *Vibrio anguillarum* in turbot [102].

Gilthead seabream (*Sparus aurata*) specimens were fed a commercial diet supplemented with 108 cfu g-1 of *Shewanella putrefaciens*(Pdp11) for 15 days and challenged with 3.7×107 cfu ml-1 of *Vibrio anguillarum* DC11R2a [103]. The mortality of the fish which receiving the diet supple‐ mented with the potential probiotic Pdp11 was 10%, lower than the mortality of the fish that received the control diet (56%).

In other works [104, 105] it has been described the effect of the dietary administration of 109 cfu g-1 of *Shewanella putrefaciens* (Pdp11) and *Shewanella baltica* (Pdp13) to sole (*Solea senegalen‐ sis*) against *Photobacterium damselae* ssp. *piscicida*. The mortality decreased after one and two months with dietary administration of both bacteria compared with the control diet.

In european seabass (*Dicentrarchus labrax*) juvenile specimens, it has been demonstrated that dietary intake of *Artemia* with an acid lactic bacteria (*Lactobacillus delbrueckii* ssp. *delbrueckii*) improved growth of specimens [106]. Dietary administration of 109 cfu g-1 of *Vagococcus fluvialis* during 20 days in adults resulted in a mortality of 17.3% while in control group (without probiotic) was 30% after exposure to *Vibrio anguillarum* 975-1 [107].

#### **7. Conclusions**

Probiotics are usually live microorganisms that administered at adequate doses confer health benefits to the host. In this review we have focused only in those probiotics conferring protection to shellfish and fish species important for the aquaculture against viral and bacterial diseases. Some of the main conclusions are summarized below:

**•** The most studied probiotics are usually *Bacillus* and *Lactobacillus* species.


Further studies are still necessary to increase our knowledge about the use of probiotics to control bacterial infections in shellfish and fish but much more efforts are needed in the case of viral diseases. This is an important issue for the aquaculture industry that is continuously growing due to the fish and shellfish demand for human consume. Apart from the discovery of new or better probiotic formulations, improvement of their benefits may be helpful. Thus, better and cheaper production methods, administration ways or combination with other preventive/therapeutic measures are welcomed.

#### **Acknowledgements**

*sa* VSG-2 for two months showed a higher survival rate (66% and 55%, respectively) than in the control group (11%) after injection with *Aeromonas hydrophila* MTCC1739. So, the appro‐

*Lactobacillus plantarum* VSG-3 which achieved the better survival rate (66% and 77%, respec‐ tively) after challenge with *Aeromonas hydrophila* MTCC1739 [97, 98], demonstrating that

Turbot (*Scophthalmus maximus*) larvae specimens fed rotifers enriched with *Lactobacillus*

(53%) than specimens fed rotifers without probiotics (8%) [99]. Similarly, larvae specimens

cumulative mortality compared with control larvae specimens. In addition, this *Roseobacter* sp. strain 27-4 was previously tested as antagonist to *Vibrio anguillarum* [100]. When specimens were fed rotifers enriched with *Roseobacter* sp. strain 27-4 and infected with *Vibrio anguilla‐ rum*, achieved a decrease in cumulative mortality compared with specimens only infected [101]. It was demonstrated in an *in vitro* assay that *Phaeobacter* sp. and *Ruegeria* sp. are also

Gilthead seabream (*Sparus aurata*) specimens were fed a commercial diet supplemented with

*Vibrio anguillarum* DC11R2a [103]. The mortality of the fish which receiving the diet supple‐ mented with the potential probiotic Pdp11 was 10%, lower than the mortality of the fish that

In other works [104, 105] it has been described the effect of the dietary administration of 109 cfu g-1 of *Shewanella putrefaciens* (Pdp11) and *Shewanella baltica* (Pdp13) to sole (*Solea senegalen‐ sis*) against *Photobacterium damselae* ssp. *piscicida*. The mortality decreased after one and two

In european seabass (*Dicentrarchus labrax*) juvenile specimens, it has been demonstrated that dietary intake of *Artemia* with an acid lactic bacteria (*Lactobacillus delbrueckii* ssp. *delbrueckii*)

*fluvialis* during 20 days in adults resulted in a mortality of 17.3% while in control group

Probiotics are usually live microorganisms that administered at adequate doses confer health benefits to the host. In this review we have focused only in those probiotics conferring protection to shellfish and fish species important for the aquaculture against viral and bacterial

cfu g-1 of *Shewanella putrefaciens*(Pdp11) for 15 days and challenged with 3.7×107

months with dietary administration of both bacteria compared with the control diet.

improved growth of specimens [106]. Dietary administration of 109

diseases. Some of the main conclusions are summarized below:

(without probiotic) was 30% after exposure to *Vibrio anguillarum* 975-1 [107].

**•** The most studied probiotics are usually *Bacillus* and *Lactobacillus* species.


probiotics are only effective when administered in adequate doses.

cfu g-1 of *Pseudomonas aeruginosa* VSG-2 and 108

cfu ml-1 showed a higher survival ratio

cfu ml-1 showed a significant decrease in

cfu g-1 of

cfu ml-1 of

cfu g-1 of *Vagococcus*

priate administration dose was 107

254 Sustainable Aquaculture Techniques

received the control diet (56%).

**7. Conclusions**

108

*plantarum* and *Carnobacterium* sp. at doses of 107

exposed to *Roseobacter* sp. strain 27-4 at dose of 107

potential probiotics against *Vibrio anguillarum* in turbot [102].

H. Cordero wishes to thank the *Ministerio de Economía y Competitividad* (MINECO) for a *F.P.I.* fellowship. This work has been funded by grants AGL2010-20801-C02-02 (MINECO and FEDER), AGL2011-30381-C03-01 (MINECO) and 04538/GERM/06 (*Fundación Séneca, Grupo de Excelencia de la Región de Murcia*).

#### **Author details**

Héctor Cordero, María Ángeles Esteban and Alberto Cuesta

Fish Innate Immune System Group, Department of Cell Biology and Histology, Faculty of Biology, Regional Campus of International Excellence "Campus Mare Nostrum". University of Murcia, Murcia, Spain

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Use of Probiotic Bacteria against Bacterial and Viral Infections in Shellfish and Fish Aquaculture

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## *Edited by Martha Patricia Hernández-Vergara and Carlos Ivan Pérez-Rostro*

This book presents some innovative developments in sustainable aquaculture practices in the context of environmental protection and seafood production techniques. The chapters are written by experts in their respective areas, so that their contribution represents the progress of their research, which is intended to mark the current frontier in aquaculture practices. Every chapter presents techniques that contribute to good aquaculture practices, where direct and vital nutrition and food, as a source of energy and biomass generation, is fundamentally based. We hope this book supports producers and researchers in their activities and helps to maintain a spirit of environmental protection in the context of production of high quality, nutritional food.

Sustainable Aquaculture Techniques

Sustainable Aquaculture

Techniques

*Edited by Martha Patricia Hernández-Vergara* 

*and Carlos Ivan Pérez-Rostro*

Photo by DeepAqua / iStock